HEADER CELL CYCLE 17-JUN-21 7N9G TITLE CRYSTAL STRUCTURE OF THE ABL 1B KINASE DOMAIN IN COMPLEX WITH TITLE 2 DASATINIB AND IMATINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1,ABELSON COMPND 5 TYROSINE-PROTEIN KINASE 1,PROTO-ONCOGENE C-ABL,P150; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL1, ABL, JTK7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ABL KINASE, KINASE ALLOSTERIC REGULATION, DRUG RESISTANCE, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.MILLER,T.XIE REVDAT 2 18-OCT-23 7N9G 1 REMARK REVDAT 1 27-APR-22 7N9G 0 JRNL AUTH T.XIE,T.SALEH,P.ROSSI,D.MILLER,C.G.KALODIMOS JRNL TITL IMATINIB CAN ACT AS AN ALLOSTERIC ACTIVATOR OF ABL KINASE. JRNL REF J.MOL.BIOL. V. 434 67349 2022 JRNL REFN ESSN 1089-8638 JRNL PMID 34774565 JRNL DOI 10.1016/J.JMB.2021.167349 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 55936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.834 REMARK 3 FREE R VALUE TEST SET COUNT : 2704 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3811 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 215 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.58500 REMARK 3 B22 (A**2) : -1.88700 REMARK 3 B33 (A**2) : -1.69800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.231 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.206 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6264 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5577 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8506 ; 1.289 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12872 ; 1.244 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 736 ; 6.712 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 299 ;34.255 ;22.910 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 978 ;14.410 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;11.506 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 776 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6973 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1361 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1178 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 35 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3066 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 196 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2980 ; 3.170 ; 5.648 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2978 ; 3.170 ; 5.647 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3702 ; 4.741 ; 8.446 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3703 ; 4.741 ; 8.447 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3282 ; 3.845 ; 5.834 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3279 ; 3.843 ; 5.836 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4803 ; 5.909 ; 8.627 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4798 ; 5.908 ; 8.631 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7N9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.18400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GQG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM DIHYDROGEN PHOSPHATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.96650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 83.43950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 93.40850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.96650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 83.43950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.40850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.96650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 83.43950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.40850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.96650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 83.43950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.40850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 248 REMARK 465 PRO A 249 REMARK 465 ASN A 250 REMARK 465 TYR A 251 REMARK 465 GLU A 294 REMARK 465 ASP A 295 REMARK 465 THR A 296 REMARK 465 MET A 407 REMARK 465 THR A 408 REMARK 465 GLY A 409 REMARK 465 ASP A 410 REMARK 465 THR A 411 REMARK 465 TYR A 412 REMARK 465 THR A 413 REMARK 465 ALA A 414 REMARK 465 HIS A 415 REMARK 465 ALA A 416 REMARK 465 GLY A 417 REMARK 465 ALA A 418 REMARK 465 LYS A 419 REMARK 465 GLU A 518 REMARK 465 SER B 248 REMARK 465 PRO B 249 REMARK 465 ASN B 250 REMARK 465 TYR B 251 REMARK 465 GLY B 270 REMARK 465 GLN B 271 REMARK 465 GLU B 518 REMARK 465 SER C 248 REMARK 465 PRO C 249 REMARK 465 ASN C 250 REMARK 465 TYR C 251 REMARK 465 ASP C 252 REMARK 465 GLY C 268 REMARK 465 GLY C 269 REMARK 465 GLY C 270 REMARK 465 GLN C 271 REMARK 465 TYR C 272 REMARK 465 GLY C 273 REMARK 465 GLU C 274 REMARK 465 LYS C 281 REMARK 465 LYS C 282 REMARK 465 TYR C 283 REMARK 465 SER C 284 REMARK 465 LEU C 285 REMARK 465 LEU C 292 REMARK 465 LYS C 293 REMARK 465 GLU C 294 REMARK 465 ASP C 295 REMARK 465 THR C 296 REMARK 465 MET C 297 REMARK 465 GLY C 322 REMARK 465 VAL C 323 REMARK 465 CYS C 324 REMARK 465 THR C 325 REMARK 465 ARG C 326 REMARK 465 GLU C 327 REMARK 465 PRO C 328 REMARK 465 PRO C 329 REMARK 465 PHE C 330 REMARK 465 TYR C 331 REMARK 465 HIS C 415 REMARK 465 ALA C 416 REMARK 465 GLY C 417 REMARK 465 ALA C 418 REMARK 465 LYS C 419 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 MET A 297 CG SD CE REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 ARG A 326 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 GLU A 392 CG CD OE1 OE2 REMARK 470 LYS A 434 CG CD CE NZ REMARK 470 LYS A 486 CG CD CE NZ REMARK 470 GLN A 517 CG CD OE1 NE2 REMARK 470 ARG B 258 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 272 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 293 CG CD CE NZ REMARK 470 GLU B 294 CG CD OE1 OE2 REMARK 470 ARG B 326 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 327 CG CD OE1 OE2 REMARK 470 LYS B 375 CG CD CE NZ REMARK 470 LYS B 419 CG CD CE NZ REMARK 470 LYS B 434 CG CD CE NZ REMARK 470 GLN B 517 CG CD OE1 NE2 REMARK 470 LYS C 253 CG CD CE NZ REMARK 470 TRP C 254 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 254 CZ3 CH2 REMARK 470 GLU C 255 CG CD OE1 OE2 REMARK 470 MET C 256 CG SD CE REMARK 470 GLU C 257 CG CD OE1 OE2 REMARK 470 ARG C 258 CG CD NE CZ NH1 NH2 REMARK 470 THR C 259 OG1 CG2 REMARK 470 ASP C 260 CG OD1 OD2 REMARK 470 ILE C 261 CG1 CG2 CD1 REMARK 470 THR C 262 OG1 CG2 REMARK 470 MET C 263 CG SD CE REMARK 470 LYS C 264 CG CD CE NZ REMARK 470 HIS C 265 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 266 CG CD CE NZ REMARK 470 LEU C 267 CG CD1 CD2 REMARK 470 VAL C 275 CG1 CG2 REMARK 470 TYR C 276 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL C 279 CG1 CG2 REMARK 470 TRP C 280 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 280 CZ3 CH2 REMARK 470 THR C 286 OG1 CG2 REMARK 470 VAL C 289 CG1 CG2 REMARK 470 LYS C 290 CG CD CE NZ REMARK 470 THR C 291 OG1 CG2 REMARK 470 GLU C 298 CG CD OE1 OE2 REMARK 470 VAL C 299 CG1 CG2 REMARK 470 GLU C 300 CG CD OE1 OE2 REMARK 470 GLU C 301 CG CD OE1 OE2 REMARK 470 LEU C 303 CG CD1 CD2 REMARK 470 LYS C 304 CG CD CE NZ REMARK 470 GLU C 305 CG CD OE1 OE2 REMARK 470 LYS C 310 CG CD CE NZ REMARK 470 LYS C 313 CG CD CE NZ REMARK 470 ILE C 332 CG1 CG2 CD1 REMARK 470 ILE C 333 CG1 CG2 CD1 REMARK 470 LYS C 376 CG CD CE NZ REMARK 470 LEU C 403 CG CD1 CD2 REMARK 470 ARG C 405 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 406 CG CD1 CD2 REMARK 470 MET C 407 CG SD CE REMARK 470 PHE C 435 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU C 518 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 264 -157.00 -121.16 REMARK 500 ASN A 355 -168.82 -112.97 REMARK 500 ASP A 382 56.49 -153.15 REMARK 500 LYS A 473 34.25 -93.11 REMARK 500 LYS B 264 -157.25 -124.66 REMARK 500 GLU B 294 -134.60 35.80 REMARK 500 ASN B 355 -165.06 -110.53 REMARK 500 ASP B 382 44.83 -149.32 REMARK 500 ALA B 399 -168.58 -122.97 REMARK 500 ASP B 400 84.79 58.54 REMARK 500 TRP C 254 -56.89 -122.04 REMARK 500 LYS C 264 -164.84 -116.53 REMARK 500 PRO C 421 99.76 -65.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 7N9G A 248 518 UNP P00519 ABL1_HUMAN 229 499 DBREF 7N9G B 248 518 UNP P00519 ABL1_HUMAN 229 499 DBREF 7N9G C 248 518 UNP P00519 ABL1_HUMAN 229 499 SEQRES 1 A 271 SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR ASP SEQRES 2 A 271 ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY SEQRES 3 A 271 GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU THR SEQRES 4 A 271 VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU VAL SEQRES 5 A 271 GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU ILE SEQRES 6 A 271 LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS THR SEQRES 7 A 271 ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET THR SEQRES 8 A 271 TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG SEQRES 9 A 271 GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA THR SEQRES 10 A 271 GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS ASN SEQRES 11 A 271 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL SEQRES 12 A 271 GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU SEQRES 13 A 271 SER ARG LEU MET THR GLY ASP THR TYR THR ALA HIS ALA SEQRES 14 A 271 GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SER SEQRES 15 A 271 LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL TRP SEQRES 16 A 271 ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR GLY SEQRES 17 A 271 MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL TYR SEQRES 18 A 271 GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO GLU SEQRES 19 A 271 GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA CYS SEQRES 20 A 271 TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA GLU SEQRES 21 A 271 ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU SEQRES 1 B 271 SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR ASP SEQRES 2 B 271 ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY SEQRES 3 B 271 GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU THR SEQRES 4 B 271 VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU VAL SEQRES 5 B 271 GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU ILE SEQRES 6 B 271 LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS THR SEQRES 7 B 271 ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET THR SEQRES 8 B 271 TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG SEQRES 9 B 271 GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA THR SEQRES 10 B 271 GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS ASN SEQRES 11 B 271 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL SEQRES 12 B 271 GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU SEQRES 13 B 271 SER ARG LEU MET THR GLY ASP THR TYR THR ALA HIS ALA SEQRES 14 B 271 GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SER SEQRES 15 B 271 LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL TRP SEQRES 16 B 271 ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR GLY SEQRES 17 B 271 MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL TYR SEQRES 18 B 271 GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO GLU SEQRES 19 B 271 GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA CYS SEQRES 20 B 271 TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA GLU SEQRES 21 B 271 ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU SEQRES 1 C 271 SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR ASP SEQRES 2 C 271 ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY SEQRES 3 C 271 GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU THR SEQRES 4 C 271 VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU VAL SEQRES 5 C 271 GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU ILE SEQRES 6 C 271 LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS THR SEQRES 7 C 271 ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET THR SEQRES 8 C 271 TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG SEQRES 9 C 271 GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA THR SEQRES 10 C 271 GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS ASN SEQRES 11 C 271 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL SEQRES 12 C 271 GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU SEQRES 13 C 271 SER ARG LEU MET THR GLY ASP THR TYR THR ALA HIS ALA SEQRES 14 C 271 GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SER SEQRES 15 C 271 LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL TRP SEQRES 16 C 271 ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR GLY SEQRES 17 C 271 MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL TYR SEQRES 18 C 271 GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO GLU SEQRES 19 C 271 GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA CYS SEQRES 20 C 271 TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA GLU SEQRES 21 C 271 ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU HET STI A 601 37 HET 1N1 A 602 33 HET PO4 A 603 5 HET STI B 601 37 HET 1N1 B 602 33 HET STI C 601 37 HET 1N1 C 602 33 HETNAM STI 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4- HETNAM 2 STI PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE HETNAM 1N1 N-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL) HETNAM 2 1N1 PIPERAZIN-1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3- HETNAM 3 1N1 THIAZOLE-5-CARBOXAMIDE HETNAM PO4 PHOSPHATE ION HETSYN STI STI-571; IMATINIB HETSYN 1N1 DASATINIB FORMUL 4 STI 3(C29 H31 N7 O) FORMUL 5 1N1 3(C22 H26 CL N7 O2 S) FORMUL 6 PO4 O4 P 3- FORMUL 11 HOH *206(H2 O) HELIX 1 AA1 GLU A 257 THR A 259 5 3 HELIX 2 AA2 GLY A 268 GLN A 271 5 4 HELIX 3 AA3 LYS A 282 SER A 284 5 3 HELIX 4 AA4 GLU A 298 GLU A 311 1 14 HELIX 5 AA5 LEU A 342 CYS A 349 1 8 HELIX 6 AA6 ASN A 355 LYS A 376 1 22 HELIX 7 AA7 ALA A 384 ARG A 386 5 3 HELIX 8 AA8 GLU A 392 HIS A 394 5 3 HELIX 9 AA9 PRO A 421 THR A 425 5 5 HELIX 10 AB1 ALA A 426 ASN A 433 1 8 HELIX 11 AB2 SER A 436 THR A 453 1 18 HELIX 12 AB3 ASP A 463 SER A 465 5 3 HELIX 13 AB4 GLN A 466 LYS A 473 1 8 HELIX 14 AB5 PRO A 484 TRP A 495 1 12 HELIX 15 AB6 ASN A 498 ARG A 502 5 5 HELIX 16 AB7 SER A 504 PHE A 516 1 13 HELIX 17 AB8 GLU B 257 THR B 259 5 3 HELIX 18 AB9 LYS B 282 SER B 284 5 3 HELIX 19 AC1 GLU B 298 LYS B 310 1 13 HELIX 20 AC2 LEU B 342 CYS B 349 1 8 HELIX 21 AC3 ASN B 355 LYS B 376 1 22 HELIX 22 AC4 ALA B 384 ARG B 386 5 3 HELIX 23 AC5 GLU B 392 HIS B 394 5 3 HELIX 24 AC6 PRO B 421 THR B 425 5 5 HELIX 25 AC7 ALA B 426 ASN B 433 1 8 HELIX 26 AC8 SER B 436 THR B 453 1 18 HELIX 27 AC9 ASP B 463 SER B 465 5 3 HELIX 28 AD1 GLN B 466 LYS B 473 1 8 HELIX 29 AD2 PRO B 484 TRP B 495 1 12 HELIX 30 AD3 ASN B 498 ARG B 502 5 5 HELIX 31 AD4 SER B 504 PHE B 516 1 13 HELIX 32 AD5 VAL C 299 GLU C 311 1 13 HELIX 33 AD6 LEU C 342 CYS C 349 1 8 HELIX 34 AD7 ASN C 355 LYS C 376 1 22 HELIX 35 AD8 ALA C 384 ARG C 386 5 3 HELIX 36 AD9 GLU C 392 HIS C 394 5 3 HELIX 37 AE1 ALA C 426 ASN C 433 1 8 HELIX 38 AE2 SER C 436 THR C 453 1 18 HELIX 39 AE3 ASP C 463 SER C 465 5 3 HELIX 40 AE4 GLN C 466 LYS C 473 1 8 HELIX 41 AE5 PRO C 484 TRP C 495 1 12 HELIX 42 AE6 ASN C 498 ARG C 502 5 5 HELIX 43 AE7 SER C 504 GLU C 518 1 15 SHEET 1 AA1 5 ILE A 261 LYS A 266 0 SHEET 2 AA1 5 VAL A 275 TRP A 280 -1 O GLU A 277 N HIS A 265 SHEET 3 AA1 5 LEU A 285 LEU A 292 -1 O VAL A 289 N TYR A 276 SHEET 4 AA1 5 PHE A 330 GLU A 335 -1 O ILE A 332 N LYS A 290 SHEET 5 AA1 5 LEU A 320 CYS A 324 -1 N GLY A 322 O ILE A 333 SHEET 1 AA2 3 GLY A 340 ASN A 341 0 SHEET 2 AA2 3 CYS A 388 VAL A 390 -1 O VAL A 390 N GLY A 340 SHEET 3 AA2 3 VAL A 396 VAL A 398 -1 O LYS A 397 N LEU A 389 SHEET 1 AA3 2 PHE A 378 HIS A 380 0 SHEET 2 AA3 2 LEU A 403 ARG A 405 -1 O SER A 404 N ILE A 379 SHEET 1 AA4 5 ILE B 261 GLY B 268 0 SHEET 2 AA4 5 GLU B 274 TRP B 280 -1 O GLU B 277 N HIS B 265 SHEET 3 AA4 5 LEU B 285 LEU B 292 -1 O VAL B 287 N GLY B 278 SHEET 4 AA4 5 PHE B 330 GLU B 335 -1 O ILE B 332 N LYS B 290 SHEET 5 AA4 5 LEU B 320 CYS B 324 -1 N GLY B 322 O ILE B 333 SHEET 1 AA5 3 GLY B 340 ASN B 341 0 SHEET 2 AA5 3 CYS B 388 VAL B 390 -1 O VAL B 390 N GLY B 340 SHEET 3 AA5 3 VAL B 396 VAL B 398 -1 O LYS B 397 N LEU B 389 SHEET 1 AA6 2 PHE B 378 ILE B 379 0 SHEET 2 AA6 2 ARG B 405 LEU B 406 -1 O ARG B 405 N ILE B 379 SHEET 1 AA7 2 TYR B 412 THR B 413 0 SHEET 2 AA7 2 LYS B 434 PHE B 435 -1 O PHE B 435 N TYR B 412 SHEET 1 AA8 3 TYR C 276 GLY C 278 0 SHEET 2 AA8 3 VAL C 287 VAL C 289 -1 O VAL C 289 N TYR C 276 SHEET 3 AA8 3 ILE C 333 THR C 334 -1 O THR C 334 N ALA C 288 SHEET 1 AA9 3 GLY C 340 ASN C 341 0 SHEET 2 AA9 3 CYS C 388 VAL C 390 -1 O VAL C 390 N GLY C 340 SHEET 3 AA9 3 VAL C 396 VAL C 398 -1 O LYS C 397 N LEU C 389 SHEET 1 AB1 2 PHE C 378 HIS C 380 0 SHEET 2 AB1 2 LEU C 403 ARG C 405 -1 O SER C 404 N ILE C 379 SHEET 1 AB2 2 TYR C 412 THR C 413 0 SHEET 2 AB2 2 LYS C 434 PHE C 435 -1 O PHE C 435 N TYR C 412 CISPEP 1 PRO A 328 PRO A 329 0 -5.00 CISPEP 2 PRO B 328 PRO B 329 0 -12.26 CRYST1 69.933 166.879 186.817 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014299 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005353 0.00000