data_7NA4 # _entry.id 7NA4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7NA4 pdb_00007na4 10.2210/pdb7na4/pdb WWPDB D_1000257666 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-11-10 2 'Structure model' 1 1 2021-11-24 3 'Structure model' 1 2 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7NA4 _pdbx_database_status.recvd_initial_deposition_date 2021-06-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Scapin, G.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID 0000-0002-0724-2286 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Med.Chem. _citation.journal_id_ASTM JMCMAR _citation.journal_id_CSD 0151 _citation.journal_id_ISSN 0022-2623 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 64 _citation.language ? _citation.page_first 16213 _citation.page_last 16241 _citation.title 'Discovery of MK-4688 : an Efficient Inhibitor of the HDM2-p53 Protein-Protein Interaction.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.1c01524 _citation.pdbx_database_id_PubMed 34714078 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Reutershan, M.H.' 1 ? primary 'Machacek, M.R.' 2 ? primary 'Altman, M.D.' 3 ? primary 'Bogen, S.' 4 ? primary 'Cai, M.' 5 ? primary 'Cammarano, C.' 6 ? primary 'Chen, D.' 7 ? primary 'Christopher, M.' 8 ? primary 'Cryan, J.' 9 ? primary 'Daublain, P.' 10 ? primary 'Fradera, X.' 11 ? primary 'Geda, P.' 12 ? primary 'Goldenblatt, P.' 13 ? primary 'Hill, A.D.' 14 ? primary 'Kemper, R.A.' 15 ? primary 'Kutilek, V.' 16 ? primary 'Li, C.' 17 ? primary 'Martinez, M.' 18 ? primary 'McCoy, M.' 19 ? primary 'Nair, L.' 20 ? primary 'Pan, W.' 21 ? primary 'Thompson, C.F.' 22 ? primary 'Scapin, G.' 23 ? primary 'Shizuka, M.' 24 ? primary 'Spatz, M.L.' 25 ? primary 'Steinhuebel, D.' 26 ? primary 'Sun, B.' 27 ? primary 'Voss, M.E.' 28 ? primary 'Wang, X.' 29 ? primary 'Yang, L.' 30 ? primary 'Yeh, T.C.' 31 ? primary 'Dussault, I.' 32 ? primary 'Marshall, C.G.' 33 ? primary 'Trotter, B.W.' 34 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Isoform 11 of E3 ubiquitin-protein ligase Mdm2' 12592.401 1 2.3.2.27 ? ? ? 2 non-polymer syn ;3-[4-(5-chloropyridin-3-yl)-2-[(R)-cyclopropyl(ethoxy)methyl]-3-{(1R)-1-[(1r,4R)-4-methylcyclohexyl]ethyl}-3H-imidazo[4,5-c]pyridin-6-yl]-1,2,4-oxadiazol-5(4H)-one ; 537.053 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 29 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Double minute 2 protein,Hdm2,Oncoprotein Mdm2,RING-type E3 ubiquitin transferase Mdm2,p53-binding protein Mdm2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE HRKIYTMIYRNLVVVNQQESSDSGTSVSEN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKE HRKIYTMIYRNLVVVNQQESSDSGTSVSEN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;3-[4-(5-chloropyridin-3-yl)-2-[(R)-cyclopropyl(ethoxy)methyl]-3-{(1R)-1-[(1r,4R)-4-methylcyclohexyl]ethyl}-3H-imidazo[4,5-c]pyridin-6-yl]-1,2,4-oxadiazol-5(4H)-one ; 1I9 3 GLYCEROL GOL 4 'CHLORIDE ION' CL 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLN n 1 4 ILE n 1 5 PRO n 1 6 ALA n 1 7 SER n 1 8 GLU n 1 9 GLN n 1 10 GLU n 1 11 THR n 1 12 LEU n 1 13 VAL n 1 14 ARG n 1 15 PRO n 1 16 LYS n 1 17 PRO n 1 18 LEU n 1 19 LEU n 1 20 LEU n 1 21 LYS n 1 22 LEU n 1 23 LEU n 1 24 LYS n 1 25 SER n 1 26 VAL n 1 27 GLY n 1 28 ALA n 1 29 GLN n 1 30 LYS n 1 31 ASP n 1 32 THR n 1 33 TYR n 1 34 THR n 1 35 MET n 1 36 LYS n 1 37 GLU n 1 38 VAL n 1 39 LEU n 1 40 PHE n 1 41 TYR n 1 42 LEU n 1 43 GLY n 1 44 GLN n 1 45 TYR n 1 46 ILE n 1 47 MET n 1 48 THR n 1 49 LYS n 1 50 ARG n 1 51 LEU n 1 52 TYR n 1 53 ASP n 1 54 GLU n 1 55 LYS n 1 56 GLN n 1 57 GLN n 1 58 HIS n 1 59 ILE n 1 60 VAL n 1 61 TYR n 1 62 CYS n 1 63 SER n 1 64 ASN n 1 65 ASP n 1 66 LEU n 1 67 LEU n 1 68 GLY n 1 69 ASP n 1 70 LEU n 1 71 PHE n 1 72 GLY n 1 73 VAL n 1 74 PRO n 1 75 SER n 1 76 PHE n 1 77 SER n 1 78 VAL n 1 79 LYS n 1 80 GLU n 1 81 HIS n 1 82 ARG n 1 83 LYS n 1 84 ILE n 1 85 TYR n 1 86 THR n 1 87 MET n 1 88 ILE n 1 89 TYR n 1 90 ARG n 1 91 ASN n 1 92 LEU n 1 93 VAL n 1 94 VAL n 1 95 VAL n 1 96 ASN n 1 97 GLN n 1 98 GLN n 1 99 GLU n 1 100 SER n 1 101 SER n 1 102 ASP n 1 103 SER n 1 104 GLY n 1 105 THR n 1 106 SER n 1 107 VAL n 1 108 SER n 1 109 GLU n 1 110 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 110 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MDM2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1I9 non-polymer . ;3-[4-(5-chloropyridin-3-yl)-2-[(R)-cyclopropyl(ethoxy)methyl]-3-{(1R)-1-[(1r,4R)-4-methylcyclohexyl]ethyl}-3H-imidazo[4,5-c]pyridin-6-yl]-1,2,4-oxadiazol-5(4H)-one ; ? 'C28 H33 Cl N6 O3' 537.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 16 16 GLY GLY A . n A 1 2 SER 2 17 17 SER SER A . n A 1 3 GLN 3 18 18 GLN GLN A . n A 1 4 ILE 4 19 19 ILE ILE A . n A 1 5 PRO 5 20 20 PRO PRO A . n A 1 6 ALA 6 21 21 ALA ALA A . n A 1 7 SER 7 22 22 SER SER A . n A 1 8 GLU 8 23 23 GLU GLU A . n A 1 9 GLN 9 24 24 GLN GLN A . n A 1 10 GLU 10 25 25 GLU GLU A . n A 1 11 THR 11 26 26 THR THR A . n A 1 12 LEU 12 27 27 LEU LEU A . n A 1 13 VAL 13 28 28 VAL VAL A . n A 1 14 ARG 14 29 29 ARG ARG A . n A 1 15 PRO 15 30 30 PRO PRO A . n A 1 16 LYS 16 31 31 LYS LYS A . n A 1 17 PRO 17 32 32 PRO PRO A . n A 1 18 LEU 18 33 33 LEU LEU A . n A 1 19 LEU 19 34 34 LEU LEU A . n A 1 20 LEU 20 35 35 LEU LEU A . n A 1 21 LYS 21 36 36 LYS LYS A . n A 1 22 LEU 22 37 37 LEU LEU A . n A 1 23 LEU 23 38 38 LEU LEU A . n A 1 24 LYS 24 39 39 LYS LYS A . n A 1 25 SER 25 40 40 SER SER A . n A 1 26 VAL 26 41 41 VAL VAL A . n A 1 27 GLY 27 42 42 GLY GLY A . n A 1 28 ALA 28 43 43 ALA ALA A . n A 1 29 GLN 29 44 44 GLN GLN A . n A 1 30 LYS 30 45 45 LYS LYS A . n A 1 31 ASP 31 46 46 ASP ASP A . n A 1 32 THR 32 47 47 THR THR A . n A 1 33 TYR 33 48 48 TYR TYR A . n A 1 34 THR 34 49 49 THR THR A . n A 1 35 MET 35 50 50 MET MET A . n A 1 36 LYS 36 51 51 LYS LYS A . n A 1 37 GLU 37 52 52 GLU GLU A . n A 1 38 VAL 38 53 53 VAL VAL A . n A 1 39 LEU 39 54 54 LEU LEU A . n A 1 40 PHE 40 55 55 PHE PHE A . n A 1 41 TYR 41 56 56 TYR TYR A . n A 1 42 LEU 42 57 57 LEU LEU A . n A 1 43 GLY 43 58 58 GLY GLY A . n A 1 44 GLN 44 59 59 GLN GLN A . n A 1 45 TYR 45 60 60 TYR TYR A . n A 1 46 ILE 46 61 61 ILE ILE A . n A 1 47 MET 47 62 62 MET MET A . n A 1 48 THR 48 63 63 THR THR A . n A 1 49 LYS 49 64 64 LYS LYS A . n A 1 50 ARG 50 65 65 ARG ARG A . n A 1 51 LEU 51 66 66 LEU LEU A . n A 1 52 TYR 52 67 67 TYR TYR A . n A 1 53 ASP 53 68 68 ASP ASP A . n A 1 54 GLU 54 69 69 GLU GLU A . n A 1 55 LYS 55 70 70 LYS LYS A . n A 1 56 GLN 56 71 71 GLN GLN A . n A 1 57 GLN 57 72 72 GLN GLN A . n A 1 58 HIS 58 73 73 HIS HIS A . n A 1 59 ILE 59 74 74 ILE ILE A . n A 1 60 VAL 60 75 75 VAL VAL A . n A 1 61 TYR 61 76 76 TYR TYR A . n A 1 62 CYS 62 77 77 CYS CYS A . n A 1 63 SER 63 78 78 SER SER A . n A 1 64 ASN 64 79 79 ASN ASN A . n A 1 65 ASP 65 80 80 ASP ASP A . n A 1 66 LEU 66 81 81 LEU LEU A . n A 1 67 LEU 67 82 82 LEU LEU A . n A 1 68 GLY 68 83 83 GLY GLY A . n A 1 69 ASP 69 84 84 ASP ASP A . n A 1 70 LEU 70 85 85 LEU LEU A . n A 1 71 PHE 71 86 86 PHE PHE A . n A 1 72 GLY 72 87 87 GLY GLY A . n A 1 73 VAL 73 88 88 VAL VAL A . n A 1 74 PRO 74 89 89 PRO PRO A . n A 1 75 SER 75 90 90 SER SER A . n A 1 76 PHE 76 91 91 PHE PHE A . n A 1 77 SER 77 92 92 SER SER A . n A 1 78 VAL 78 93 93 VAL VAL A . n A 1 79 LYS 79 94 94 LYS LYS A . n A 1 80 GLU 80 95 95 GLU GLU A . n A 1 81 HIS 81 96 96 HIS HIS A . n A 1 82 ARG 82 97 97 ARG ARG A . n A 1 83 LYS 83 98 98 LYS LYS A . n A 1 84 ILE 84 99 99 ILE ILE A . n A 1 85 TYR 85 100 100 TYR TYR A . n A 1 86 THR 86 101 101 THR THR A . n A 1 87 MET 87 102 102 MET MET A . n A 1 88 ILE 88 103 103 ILE ILE A . n A 1 89 TYR 89 104 104 TYR TYR A . n A 1 90 ARG 90 105 105 ARG ARG A . n A 1 91 ASN 91 106 106 ASN ASN A . n A 1 92 LEU 92 107 107 LEU LEU A . n A 1 93 VAL 93 108 108 VAL VAL A . n A 1 94 VAL 94 109 109 VAL VAL A . n A 1 95 VAL 95 110 110 VAL VAL A . n A 1 96 ASN 96 111 111 ASN ASN A . n A 1 97 GLN 97 112 ? ? ? A . n A 1 98 GLN 98 113 ? ? ? A . n A 1 99 GLU 99 114 ? ? ? A . n A 1 100 SER 100 115 ? ? ? A . n A 1 101 SER 101 116 ? ? ? A . n A 1 102 ASP 102 117 ? ? ? A . n A 1 103 SER 103 118 ? ? ? A . n A 1 104 GLY 104 119 ? ? ? A . n A 1 105 THR 105 120 ? ? ? A . n A 1 106 SER 106 121 ? ? ? A . n A 1 107 VAL 107 122 ? ? ? A . n A 1 108 SER 108 123 ? ? ? A . n A 1 109 GLU 109 124 ? ? ? A . n A 1 110 ASN 110 125 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1I9 1 201 1 1I9 INX A . C 3 GOL 1 202 1 GOL GOL A . D 3 GOL 1 203 2 GOL GOL A . E 4 CL 1 204 3 CL CL A . F 5 HOH 1 301 28 HOH HOH A . F 5 HOH 2 302 16 HOH HOH A . F 5 HOH 3 303 14 HOH HOH A . F 5 HOH 4 304 1 HOH HOH A . F 5 HOH 5 305 8 HOH HOH A . F 5 HOH 6 306 2 HOH HOH A . F 5 HOH 7 307 24 HOH HOH A . F 5 HOH 8 308 7 HOH HOH A . F 5 HOH 9 309 23 HOH HOH A . F 5 HOH 10 310 10 HOH HOH A . F 5 HOH 11 311 19 HOH HOH A . F 5 HOH 12 312 9 HOH HOH A . F 5 HOH 13 313 17 HOH HOH A . F 5 HOH 14 314 11 HOH HOH A . F 5 HOH 15 315 13 HOH HOH A . F 5 HOH 16 316 4 HOH HOH A . F 5 HOH 17 317 21 HOH HOH A . F 5 HOH 18 318 6 HOH HOH A . F 5 HOH 19 319 12 HOH HOH A . F 5 HOH 20 320 20 HOH HOH A . F 5 HOH 21 321 15 HOH HOH A . F 5 HOH 22 322 3 HOH HOH A . F 5 HOH 23 323 18 HOH HOH A . F 5 HOH 24 324 27 HOH HOH A . F 5 HOH 25 325 26 HOH HOH A . F 5 HOH 26 326 29 HOH HOH A . F 5 HOH 27 327 22 HOH HOH A . F 5 HOH 28 328 25 HOH HOH A . F 5 HOH 29 329 5 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLN 18 ? CG ? A GLN 3 CG 2 1 Y 0 A GLN 18 ? CD ? A GLN 3 CD 3 1 Y 0 A GLN 18 ? OE1 ? A GLN 3 OE1 4 1 Y 0 A GLN 18 ? NE2 ? A GLN 3 NE2 5 1 Y 0 A GLN 44 ? CG ? A GLN 29 CG 6 1 Y 0 A GLN 44 ? CD ? A GLN 29 CD 7 1 Y 0 A GLN 44 ? OE1 ? A GLN 29 OE1 8 1 Y 0 A GLN 44 ? NE2 ? A GLN 29 NE2 9 1 Y 0 A GLU 69 ? CD ? A GLU 54 CD 10 1 Y 0 A GLU 69 ? OE1 ? A GLU 54 OE1 11 1 Y 0 A GLU 69 ? OE2 ? A GLU 54 OE2 12 1 Y 0 A LYS 70 ? NZ ? A LYS 55 NZ 13 1 Y 0 A LYS 94 ? CE ? A LYS 79 CE 14 1 Y 0 A LYS 94 ? NZ ? A LYS 79 NZ 15 1 Y 0 A LYS 98 ? CE ? A LYS 83 CE 16 1 Y 0 A LYS 98 ? NZ ? A LYS 83 NZ 17 1 Y 0 A ARG 105 ? CZ ? A ARG 90 CZ 18 1 Y 0 A ARG 105 ? NH1 ? A ARG 90 NH1 19 1 Y 0 A ARG 105 ? NH2 ? A ARG 90 NH2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.6.0117 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7NA4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 55.736 _cell.length_a_esd ? _cell.length_b 55.736 _cell.length_b_esd ? _cell.length_c 101.296 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7NA4 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.8 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 31.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details undisclosed _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100.000 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-11-01 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.03 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.03 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 35.874 _reflns.entry_id 7NA4 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.840 _reflns.d_resolution_low 48.280 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8607 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.700 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 31.770 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.974 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.065 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.840 _reflns_shell.d_res_low 2.09 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 46 _reflns_shell.percent_possible_all 99.700 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.599 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 18.600 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.026 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 1.000 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -1.3600 _refine.aniso_B[1][2] -0.6800 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -1.3600 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 2.0400 _refine.B_iso_max 125.530 _refine.B_iso_mean 30.9900 _refine.B_iso_min 17.500 _refine.correlation_coeff_Fo_to_Fc 0.9610 _refine.correlation_coeff_Fo_to_Fc_free 0.9630 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7NA4 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.8400 _refine.ls_d_res_low 48.2800 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7743 _refine.ls_number_reflns_R_free 864 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.9100 _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1938 _refine.ls_R_factor_R_free 0.2173 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1910 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1610 _refine.pdbx_overall_ESU_R_Free 0.1370 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 3.7190 _refine.overall_SU_ML 0.1110 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.8400 _refine_hist.d_res_low 48.2800 _refine_hist.number_atoms_solvent 29 _refine_hist.number_atoms_total 864 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 96 _refine_hist.pdbx_B_iso_mean_ligand 35.55 _refine_hist.pdbx_B_iso_mean_solvent 42.19 _refine_hist.pdbx_number_atoms_protein 784 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.014 0.020 841 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 582 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.743 2.057 1141 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.186 3.000 1420 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.645 5.000 97 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 43.972 24.000 30 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.135 15.000 146 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 17.214 15.000 3 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.092 0.200 129 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 0.021 888 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 157 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.8400 _refine_ls_shell.d_res_low 1.8880 _refine_ls_shell.number_reflns_all 505 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 56 _refine_ls_shell.number_reflns_R_work 449 _refine_ls_shell.percent_reflns_obs 99.4100 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3660 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2990 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 7NA4 _struct.title 'HDM2 in complex with compound 63' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7NA4 _struct_keywords.text 'P53, DRUG DESIGN, PROTEIN-PROTEIN INTERACTIONS, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MDM2_HUMAN _struct_ref.pdbx_db_accession Q00987 _struct_ref.pdbx_db_isoform Q00987-11 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVNQQESSDSGTSVSEN ; _struct_ref.pdbx_align_begin 23 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7NA4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 110 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q00987 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 131 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 17 _struct_ref_seq.pdbx_auth_seq_align_end 125 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 7NA4 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q00987 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 16 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 5 ? GLU A 10 ? PRO A 20 GLU A 25 5 ? 6 HELX_P HELX_P2 AA2 LYS A 16 ? SER A 25 ? LYS A 31 SER A 40 1 ? 10 HELX_P HELX_P3 AA3 MET A 35 ? LYS A 49 ? MET A 50 LYS A 64 1 ? 15 HELX_P HELX_P4 AA4 ASP A 65 ? GLY A 72 ? ASP A 80 GLY A 87 1 ? 8 HELX_P HELX_P5 AA5 GLU A 80 ? ARG A 90 ? GLU A 95 ARG A 105 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 33 ? THR A 34 ? TYR A 48 THR A 49 AA1 2 LEU A 12 ? PRO A 15 ? LEU A 27 PRO A 30 AA1 3 LEU A 92 ? VAL A 94 ? LEU A 107 VAL A 109 AA2 1 ILE A 59 ? TYR A 61 ? ILE A 74 TYR A 76 AA2 2 SER A 75 ? SER A 77 ? SER A 90 SER A 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O TYR A 33 ? O TYR A 48 N VAL A 13 ? N VAL A 28 AA1 2 3 N ARG A 14 ? N ARG A 29 O VAL A 93 ? O VAL A 108 AA2 1 2 N VAL A 60 ? N VAL A 75 O PHE A 76 ? O PHE A 91 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 71 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -75.61 _pdbx_validate_torsion.psi 22.55 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CL 204 ? E CL . 2 1 A HOH 309 ? F HOH . 3 1 A HOH 311 ? F HOH . # _pdbx_entry_details.entry_id 7NA4 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 112 ? A GLN 97 2 1 Y 1 A GLN 113 ? A GLN 98 3 1 Y 1 A GLU 114 ? A GLU 99 4 1 Y 1 A SER 115 ? A SER 100 5 1 Y 1 A SER 116 ? A SER 101 6 1 Y 1 A ASP 117 ? A ASP 102 7 1 Y 1 A SER 118 ? A SER 103 8 1 Y 1 A GLY 119 ? A GLY 104 9 1 Y 1 A THR 120 ? A THR 105 10 1 Y 1 A SER 121 ? A SER 106 11 1 Y 1 A VAL 122 ? A VAL 107 12 1 Y 1 A SER 123 ? A SER 108 13 1 Y 1 A GLU 124 ? A GLU 109 14 1 Y 1 A ASN 125 ? A ASN 110 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1I9 C1 C N N 1 1I9 C2 C N N 2 1I9 C3 C N N 3 1I9 C4 C N N 4 1I9 C5 C N N 5 1I9 C6 C N N 6 1I9 C7 C N N 7 1I9 C8 C N R 8 1I9 C12 C Y N 9 1I9 C15 C Y N 10 1I9 C16 C Y N 11 1I9 C17 C Y N 12 1I9 C19 C Y N 13 1I9 C23 C N N 14 1I9 C24 C N N 15 1I9 C27 C N N 16 1I9 C30 C N N 17 1I9 C34 C Y N 18 1I9 C35 C Y N 19 1I9 C36 C Y N 20 1I9 C38 C Y N 21 1I9 C40 C Y N 22 1I9 C10 C N N 23 1I9 N11 N Y N 24 1I9 C13 C Y N 25 1I9 N14 N Y N 26 1I9 N18 N Y N 27 1I9 C20 C N R 28 1I9 O22 O N N 29 1I9 C25 C N N 30 1I9 C26 C N N 31 1I9 C28 C N N 32 1I9 N29 N N N 33 1I9 O31 O N N 34 1I9 O32 O N N 35 1I9 N33 N N N 36 1I9 CL37 CL N N 37 1I9 N39 N Y N 38 1I9 H1 H N N 39 1I9 H2 H N N 40 1I9 H3 H N N 41 1I9 H4 H N N 42 1I9 H5 H N N 43 1I9 H6 H N N 44 1I9 H7 H N N 45 1I9 H8 H N N 46 1I9 H9 H N N 47 1I9 H10 H N N 48 1I9 H11 H N N 49 1I9 H12 H N N 50 1I9 H13 H N N 51 1I9 H14 H N N 52 1I9 H15 H N N 53 1I9 H16 H N N 54 1I9 H17 H N N 55 1I9 H18 H N N 56 1I9 H19 H N N 57 1I9 H20 H N N 58 1I9 H21 H N N 59 1I9 H22 H N N 60 1I9 H23 H N N 61 1I9 H24 H N N 62 1I9 H25 H N N 63 1I9 H26 H N N 64 1I9 H27 H N N 65 1I9 H28 H N N 66 1I9 H29 H N N 67 1I9 H30 H N N 68 1I9 H31 H N N 69 1I9 H32 H N N 70 1I9 H33 H N N 71 ALA N N N N 72 ALA CA C N S 73 ALA C C N N 74 ALA O O N N 75 ALA CB C N N 76 ALA OXT O N N 77 ALA H H N N 78 ALA H2 H N N 79 ALA HA H N N 80 ALA HB1 H N N 81 ALA HB2 H N N 82 ALA HB3 H N N 83 ALA HXT H N N 84 ARG N N N N 85 ARG CA C N S 86 ARG C C N N 87 ARG O O N N 88 ARG CB C N N 89 ARG CG C N N 90 ARG CD C N N 91 ARG NE N N N 92 ARG CZ C N N 93 ARG NH1 N N N 94 ARG NH2 N N N 95 ARG OXT O N N 96 ARG H H N N 97 ARG H2 H N N 98 ARG HA H N N 99 ARG HB2 H N N 100 ARG HB3 H N N 101 ARG HG2 H N N 102 ARG HG3 H N N 103 ARG HD2 H N N 104 ARG HD3 H N N 105 ARG HE H N N 106 ARG HH11 H N N 107 ARG HH12 H N N 108 ARG HH21 H N N 109 ARG HH22 H N N 110 ARG HXT H N N 111 ASN N N N N 112 ASN CA C N S 113 ASN C C N N 114 ASN O O N N 115 ASN CB C N N 116 ASN CG C N N 117 ASN OD1 O N N 118 ASN ND2 N N N 119 ASN OXT O N N 120 ASN H H N N 121 ASN H2 H N N 122 ASN HA H N N 123 ASN HB2 H N N 124 ASN HB3 H N N 125 ASN HD21 H N N 126 ASN HD22 H N N 127 ASN HXT H N N 128 ASP N N N N 129 ASP CA C N S 130 ASP C C N N 131 ASP O O N N 132 ASP CB C N N 133 ASP CG C N N 134 ASP OD1 O N N 135 ASP OD2 O N N 136 ASP OXT O N N 137 ASP H H N N 138 ASP H2 H N N 139 ASP HA H N N 140 ASP HB2 H N N 141 ASP HB3 H N N 142 ASP HD2 H N N 143 ASP HXT H N N 144 CL CL CL N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 GLN N N N N 160 GLN CA C N S 161 GLN C C N N 162 GLN O O N N 163 GLN CB C N N 164 GLN CG C N N 165 GLN CD C N N 166 GLN OE1 O N N 167 GLN NE2 N N N 168 GLN OXT O N N 169 GLN H H N N 170 GLN H2 H N N 171 GLN HA H N N 172 GLN HB2 H N N 173 GLN HB3 H N N 174 GLN HG2 H N N 175 GLN HG3 H N N 176 GLN HE21 H N N 177 GLN HE22 H N N 178 GLN HXT H N N 179 GLU N N N N 180 GLU CA C N S 181 GLU C C N N 182 GLU O O N N 183 GLU CB C N N 184 GLU CG C N N 185 GLU CD C N N 186 GLU OE1 O N N 187 GLU OE2 O N N 188 GLU OXT O N N 189 GLU H H N N 190 GLU H2 H N N 191 GLU HA H N N 192 GLU HB2 H N N 193 GLU HB3 H N N 194 GLU HG2 H N N 195 GLU HG3 H N N 196 GLU HE2 H N N 197 GLU HXT H N N 198 GLY N N N N 199 GLY CA C N N 200 GLY C C N N 201 GLY O O N N 202 GLY OXT O N N 203 GLY H H N N 204 GLY H2 H N N 205 GLY HA2 H N N 206 GLY HA3 H N N 207 GLY HXT H N N 208 GOL C1 C N N 209 GOL O1 O N N 210 GOL C2 C N N 211 GOL O2 O N N 212 GOL C3 C N N 213 GOL O3 O N N 214 GOL H11 H N N 215 GOL H12 H N N 216 GOL HO1 H N N 217 GOL H2 H N N 218 GOL HO2 H N N 219 GOL H31 H N N 220 GOL H32 H N N 221 GOL HO3 H N N 222 HIS N N N N 223 HIS CA C N S 224 HIS C C N N 225 HIS O O N N 226 HIS CB C N N 227 HIS CG C Y N 228 HIS ND1 N Y N 229 HIS CD2 C Y N 230 HIS CE1 C Y N 231 HIS NE2 N Y N 232 HIS OXT O N N 233 HIS H H N N 234 HIS H2 H N N 235 HIS HA H N N 236 HIS HB2 H N N 237 HIS HB3 H N N 238 HIS HD1 H N N 239 HIS HD2 H N N 240 HIS HE1 H N N 241 HIS HE2 H N N 242 HIS HXT H N N 243 HOH O O N N 244 HOH H1 H N N 245 HOH H2 H N N 246 ILE N N N N 247 ILE CA C N S 248 ILE C C N N 249 ILE O O N N 250 ILE CB C N S 251 ILE CG1 C N N 252 ILE CG2 C N N 253 ILE CD1 C N N 254 ILE OXT O N N 255 ILE H H N N 256 ILE H2 H N N 257 ILE HA H N N 258 ILE HB H N N 259 ILE HG12 H N N 260 ILE HG13 H N N 261 ILE HG21 H N N 262 ILE HG22 H N N 263 ILE HG23 H N N 264 ILE HD11 H N N 265 ILE HD12 H N N 266 ILE HD13 H N N 267 ILE HXT H N N 268 LEU N N N N 269 LEU CA C N S 270 LEU C C N N 271 LEU O O N N 272 LEU CB C N N 273 LEU CG C N N 274 LEU CD1 C N N 275 LEU CD2 C N N 276 LEU OXT O N N 277 LEU H H N N 278 LEU H2 H N N 279 LEU HA H N N 280 LEU HB2 H N N 281 LEU HB3 H N N 282 LEU HG H N N 283 LEU HD11 H N N 284 LEU HD12 H N N 285 LEU HD13 H N N 286 LEU HD21 H N N 287 LEU HD22 H N N 288 LEU HD23 H N N 289 LEU HXT H N N 290 LYS N N N N 291 LYS CA C N S 292 LYS C C N N 293 LYS O O N N 294 LYS CB C N N 295 LYS CG C N N 296 LYS CD C N N 297 LYS CE C N N 298 LYS NZ N N N 299 LYS OXT O N N 300 LYS H H N N 301 LYS H2 H N N 302 LYS HA H N N 303 LYS HB2 H N N 304 LYS HB3 H N N 305 LYS HG2 H N N 306 LYS HG3 H N N 307 LYS HD2 H N N 308 LYS HD3 H N N 309 LYS HE2 H N N 310 LYS HE3 H N N 311 LYS HZ1 H N N 312 LYS HZ2 H N N 313 LYS HZ3 H N N 314 LYS HXT H N N 315 MET N N N N 316 MET CA C N S 317 MET C C N N 318 MET O O N N 319 MET CB C N N 320 MET CG C N N 321 MET SD S N N 322 MET CE C N N 323 MET OXT O N N 324 MET H H N N 325 MET H2 H N N 326 MET HA H N N 327 MET HB2 H N N 328 MET HB3 H N N 329 MET HG2 H N N 330 MET HG3 H N N 331 MET HE1 H N N 332 MET HE2 H N N 333 MET HE3 H N N 334 MET HXT H N N 335 PHE N N N N 336 PHE CA C N S 337 PHE C C N N 338 PHE O O N N 339 PHE CB C N N 340 PHE CG C Y N 341 PHE CD1 C Y N 342 PHE CD2 C Y N 343 PHE CE1 C Y N 344 PHE CE2 C Y N 345 PHE CZ C Y N 346 PHE OXT O N N 347 PHE H H N N 348 PHE H2 H N N 349 PHE HA H N N 350 PHE HB2 H N N 351 PHE HB3 H N N 352 PHE HD1 H N N 353 PHE HD2 H N N 354 PHE HE1 H N N 355 PHE HE2 H N N 356 PHE HZ H N N 357 PHE HXT H N N 358 PRO N N N N 359 PRO CA C N S 360 PRO C C N N 361 PRO O O N N 362 PRO CB C N N 363 PRO CG C N N 364 PRO CD C N N 365 PRO OXT O N N 366 PRO H H N N 367 PRO HA H N N 368 PRO HB2 H N N 369 PRO HB3 H N N 370 PRO HG2 H N N 371 PRO HG3 H N N 372 PRO HD2 H N N 373 PRO HD3 H N N 374 PRO HXT H N N 375 SER N N N N 376 SER CA C N S 377 SER C C N N 378 SER O O N N 379 SER CB C N N 380 SER OG O N N 381 SER OXT O N N 382 SER H H N N 383 SER H2 H N N 384 SER HA H N N 385 SER HB2 H N N 386 SER HB3 H N N 387 SER HG H N N 388 SER HXT H N N 389 THR N N N N 390 THR CA C N S 391 THR C C N N 392 THR O O N N 393 THR CB C N R 394 THR OG1 O N N 395 THR CG2 C N N 396 THR OXT O N N 397 THR H H N N 398 THR H2 H N N 399 THR HA H N N 400 THR HB H N N 401 THR HG1 H N N 402 THR HG21 H N N 403 THR HG22 H N N 404 THR HG23 H N N 405 THR HXT H N N 406 TYR N N N N 407 TYR CA C N S 408 TYR C C N N 409 TYR O O N N 410 TYR CB C N N 411 TYR CG C Y N 412 TYR CD1 C Y N 413 TYR CD2 C Y N 414 TYR CE1 C Y N 415 TYR CE2 C Y N 416 TYR CZ C Y N 417 TYR OH O N N 418 TYR OXT O N N 419 TYR H H N N 420 TYR H2 H N N 421 TYR HA H N N 422 TYR HB2 H N N 423 TYR HB3 H N N 424 TYR HD1 H N N 425 TYR HD2 H N N 426 TYR HE1 H N N 427 TYR HE2 H N N 428 TYR HH H N N 429 TYR HXT H N N 430 VAL N N N N 431 VAL CA C N S 432 VAL C C N N 433 VAL O O N N 434 VAL CB C N N 435 VAL CG1 C N N 436 VAL CG2 C N N 437 VAL OXT O N N 438 VAL H H N N 439 VAL H2 H N N 440 VAL HA H N N 441 VAL HB H N N 442 VAL HG11 H N N 443 VAL HG12 H N N 444 VAL HG13 H N N 445 VAL HG21 H N N 446 VAL HG22 H N N 447 VAL HG23 H N N 448 VAL HXT H N N 449 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1I9 O31 C30 doub N N 1 1I9 O32 C30 sing N N 2 1I9 O32 N33 sing N N 3 1I9 C30 N29 sing N N 4 1I9 N33 C28 doub N N 5 1I9 N29 C28 sing N N 6 1I9 C28 C15 sing N N 7 1I9 C15 N14 doub Y N 8 1I9 C15 C16 sing Y N 9 1I9 CL37 C36 sing N N 10 1I9 N14 C13 sing Y N 11 1I9 C35 C36 doub Y N 12 1I9 C35 C34 sing Y N 13 1I9 C16 C17 doub Y N 14 1I9 C36 C38 sing Y N 15 1I9 C13 C34 sing N N 16 1I9 C13 C12 doub Y N 17 1I9 C34 C40 doub Y N 18 1I9 C38 N39 doub Y N 19 1I9 C17 C12 sing Y N 20 1I9 C17 N18 sing Y N 21 1I9 C40 N39 sing Y N 22 1I9 C12 N11 sing Y N 23 1I9 N18 C19 doub Y N 24 1I9 C6 C7 sing N N 25 1I9 C6 C5 sing N N 26 1I9 C7 C2 sing N N 27 1I9 N11 C19 sing Y N 28 1I9 N11 C8 sing N N 29 1I9 C2 C1 sing N N 30 1I9 C2 C3 sing N N 31 1I9 C19 C20 sing N N 32 1I9 C8 C5 sing N N 33 1I9 C8 C10 sing N N 34 1I9 C5 C4 sing N N 35 1I9 C27 C25 sing N N 36 1I9 C27 C26 sing N N 37 1I9 C4 C3 sing N N 38 1I9 C25 C20 sing N N 39 1I9 C25 C26 sing N N 40 1I9 C20 O22 sing N N 41 1I9 O22 C23 sing N N 42 1I9 C23 C24 sing N N 43 1I9 C1 H1 sing N N 44 1I9 C1 H2 sing N N 45 1I9 C1 H3 sing N N 46 1I9 C2 H4 sing N N 47 1I9 C3 H5 sing N N 48 1I9 C3 H6 sing N N 49 1I9 C4 H7 sing N N 50 1I9 C4 H8 sing N N 51 1I9 C5 H9 sing N N 52 1I9 C6 H10 sing N N 53 1I9 C6 H11 sing N N 54 1I9 C7 H12 sing N N 55 1I9 C7 H13 sing N N 56 1I9 C8 H14 sing N N 57 1I9 C16 H15 sing N N 58 1I9 C23 H16 sing N N 59 1I9 C23 H17 sing N N 60 1I9 C24 H18 sing N N 61 1I9 C24 H19 sing N N 62 1I9 C24 H20 sing N N 63 1I9 C27 H21 sing N N 64 1I9 C27 H22 sing N N 65 1I9 C35 H23 sing N N 66 1I9 C38 H24 sing N N 67 1I9 C40 H25 sing N N 68 1I9 C10 H26 sing N N 69 1I9 C10 H27 sing N N 70 1I9 C10 H28 sing N N 71 1I9 C20 H29 sing N N 72 1I9 C25 H30 sing N N 73 1I9 C26 H31 sing N N 74 1I9 C26 H32 sing N N 75 1I9 N29 H33 sing N N 76 ALA N CA sing N N 77 ALA N H sing N N 78 ALA N H2 sing N N 79 ALA CA C sing N N 80 ALA CA CB sing N N 81 ALA CA HA sing N N 82 ALA C O doub N N 83 ALA C OXT sing N N 84 ALA CB HB1 sing N N 85 ALA CB HB2 sing N N 86 ALA CB HB3 sing N N 87 ALA OXT HXT sing N N 88 ARG N CA sing N N 89 ARG N H sing N N 90 ARG N H2 sing N N 91 ARG CA C sing N N 92 ARG CA CB sing N N 93 ARG CA HA sing N N 94 ARG C O doub N N 95 ARG C OXT sing N N 96 ARG CB CG sing N N 97 ARG CB HB2 sing N N 98 ARG CB HB3 sing N N 99 ARG CG CD sing N N 100 ARG CG HG2 sing N N 101 ARG CG HG3 sing N N 102 ARG CD NE sing N N 103 ARG CD HD2 sing N N 104 ARG CD HD3 sing N N 105 ARG NE CZ sing N N 106 ARG NE HE sing N N 107 ARG CZ NH1 sing N N 108 ARG CZ NH2 doub N N 109 ARG NH1 HH11 sing N N 110 ARG NH1 HH12 sing N N 111 ARG NH2 HH21 sing N N 112 ARG NH2 HH22 sing N N 113 ARG OXT HXT sing N N 114 ASN N CA sing N N 115 ASN N H sing N N 116 ASN N H2 sing N N 117 ASN CA C sing N N 118 ASN CA CB sing N N 119 ASN CA HA sing N N 120 ASN C O doub N N 121 ASN C OXT sing N N 122 ASN CB CG sing N N 123 ASN CB HB2 sing N N 124 ASN CB HB3 sing N N 125 ASN CG OD1 doub N N 126 ASN CG ND2 sing N N 127 ASN ND2 HD21 sing N N 128 ASN ND2 HD22 sing N N 129 ASN OXT HXT sing N N 130 ASP N CA sing N N 131 ASP N H sing N N 132 ASP N H2 sing N N 133 ASP CA C sing N N 134 ASP CA CB sing N N 135 ASP CA HA sing N N 136 ASP C O doub N N 137 ASP C OXT sing N N 138 ASP CB CG sing N N 139 ASP CB HB2 sing N N 140 ASP CB HB3 sing N N 141 ASP CG OD1 doub N N 142 ASP CG OD2 sing N N 143 ASP OD2 HD2 sing N N 144 ASP OXT HXT sing N N 145 CYS N CA sing N N 146 CYS N H sing N N 147 CYS N H2 sing N N 148 CYS CA C sing N N 149 CYS CA CB sing N N 150 CYS CA HA sing N N 151 CYS C O doub N N 152 CYS C OXT sing N N 153 CYS CB SG sing N N 154 CYS CB HB2 sing N N 155 CYS CB HB3 sing N N 156 CYS SG HG sing N N 157 CYS OXT HXT sing N N 158 GLN N CA sing N N 159 GLN N H sing N N 160 GLN N H2 sing N N 161 GLN CA C sing N N 162 GLN CA CB sing N N 163 GLN CA HA sing N N 164 GLN C O doub N N 165 GLN C OXT sing N N 166 GLN CB CG sing N N 167 GLN CB HB2 sing N N 168 GLN CB HB3 sing N N 169 GLN CG CD sing N N 170 GLN CG HG2 sing N N 171 GLN CG HG3 sing N N 172 GLN CD OE1 doub N N 173 GLN CD NE2 sing N N 174 GLN NE2 HE21 sing N N 175 GLN NE2 HE22 sing N N 176 GLN OXT HXT sing N N 177 GLU N CA sing N N 178 GLU N H sing N N 179 GLU N H2 sing N N 180 GLU CA C sing N N 181 GLU CA CB sing N N 182 GLU CA HA sing N N 183 GLU C O doub N N 184 GLU C OXT sing N N 185 GLU CB CG sing N N 186 GLU CB HB2 sing N N 187 GLU CB HB3 sing N N 188 GLU CG CD sing N N 189 GLU CG HG2 sing N N 190 GLU CG HG3 sing N N 191 GLU CD OE1 doub N N 192 GLU CD OE2 sing N N 193 GLU OE2 HE2 sing N N 194 GLU OXT HXT sing N N 195 GLY N CA sing N N 196 GLY N H sing N N 197 GLY N H2 sing N N 198 GLY CA C sing N N 199 GLY CA HA2 sing N N 200 GLY CA HA3 sing N N 201 GLY C O doub N N 202 GLY C OXT sing N N 203 GLY OXT HXT sing N N 204 GOL C1 O1 sing N N 205 GOL C1 C2 sing N N 206 GOL C1 H11 sing N N 207 GOL C1 H12 sing N N 208 GOL O1 HO1 sing N N 209 GOL C2 O2 sing N N 210 GOL C2 C3 sing N N 211 GOL C2 H2 sing N N 212 GOL O2 HO2 sing N N 213 GOL C3 O3 sing N N 214 GOL C3 H31 sing N N 215 GOL C3 H32 sing N N 216 GOL O3 HO3 sing N N 217 HIS N CA sing N N 218 HIS N H sing N N 219 HIS N H2 sing N N 220 HIS CA C sing N N 221 HIS CA CB sing N N 222 HIS CA HA sing N N 223 HIS C O doub N N 224 HIS C OXT sing N N 225 HIS CB CG sing N N 226 HIS CB HB2 sing N N 227 HIS CB HB3 sing N N 228 HIS CG ND1 sing Y N 229 HIS CG CD2 doub Y N 230 HIS ND1 CE1 doub Y N 231 HIS ND1 HD1 sing N N 232 HIS CD2 NE2 sing Y N 233 HIS CD2 HD2 sing N N 234 HIS CE1 NE2 sing Y N 235 HIS CE1 HE1 sing N N 236 HIS NE2 HE2 sing N N 237 HIS OXT HXT sing N N 238 HOH O H1 sing N N 239 HOH O H2 sing N N 240 ILE N CA sing N N 241 ILE N H sing N N 242 ILE N H2 sing N N 243 ILE CA C sing N N 244 ILE CA CB sing N N 245 ILE CA HA sing N N 246 ILE C O doub N N 247 ILE C OXT sing N N 248 ILE CB CG1 sing N N 249 ILE CB CG2 sing N N 250 ILE CB HB sing N N 251 ILE CG1 CD1 sing N N 252 ILE CG1 HG12 sing N N 253 ILE CG1 HG13 sing N N 254 ILE CG2 HG21 sing N N 255 ILE CG2 HG22 sing N N 256 ILE CG2 HG23 sing N N 257 ILE CD1 HD11 sing N N 258 ILE CD1 HD12 sing N N 259 ILE CD1 HD13 sing N N 260 ILE OXT HXT sing N N 261 LEU N CA sing N N 262 LEU N H sing N N 263 LEU N H2 sing N N 264 LEU CA C sing N N 265 LEU CA CB sing N N 266 LEU CA HA sing N N 267 LEU C O doub N N 268 LEU C OXT sing N N 269 LEU CB CG sing N N 270 LEU CB HB2 sing N N 271 LEU CB HB3 sing N N 272 LEU CG CD1 sing N N 273 LEU CG CD2 sing N N 274 LEU CG HG sing N N 275 LEU CD1 HD11 sing N N 276 LEU CD1 HD12 sing N N 277 LEU CD1 HD13 sing N N 278 LEU CD2 HD21 sing N N 279 LEU CD2 HD22 sing N N 280 LEU CD2 HD23 sing N N 281 LEU OXT HXT sing N N 282 LYS N CA sing N N 283 LYS N H sing N N 284 LYS N H2 sing N N 285 LYS CA C sing N N 286 LYS CA CB sing N N 287 LYS CA HA sing N N 288 LYS C O doub N N 289 LYS C OXT sing N N 290 LYS CB CG sing N N 291 LYS CB HB2 sing N N 292 LYS CB HB3 sing N N 293 LYS CG CD sing N N 294 LYS CG HG2 sing N N 295 LYS CG HG3 sing N N 296 LYS CD CE sing N N 297 LYS CD HD2 sing N N 298 LYS CD HD3 sing N N 299 LYS CE NZ sing N N 300 LYS CE HE2 sing N N 301 LYS CE HE3 sing N N 302 LYS NZ HZ1 sing N N 303 LYS NZ HZ2 sing N N 304 LYS NZ HZ3 sing N N 305 LYS OXT HXT sing N N 306 MET N CA sing N N 307 MET N H sing N N 308 MET N H2 sing N N 309 MET CA C sing N N 310 MET CA CB sing N N 311 MET CA HA sing N N 312 MET C O doub N N 313 MET C OXT sing N N 314 MET CB CG sing N N 315 MET CB HB2 sing N N 316 MET CB HB3 sing N N 317 MET CG SD sing N N 318 MET CG HG2 sing N N 319 MET CG HG3 sing N N 320 MET SD CE sing N N 321 MET CE HE1 sing N N 322 MET CE HE2 sing N N 323 MET CE HE3 sing N N 324 MET OXT HXT sing N N 325 PHE N CA sing N N 326 PHE N H sing N N 327 PHE N H2 sing N N 328 PHE CA C sing N N 329 PHE CA CB sing N N 330 PHE CA HA sing N N 331 PHE C O doub N N 332 PHE C OXT sing N N 333 PHE CB CG sing N N 334 PHE CB HB2 sing N N 335 PHE CB HB3 sing N N 336 PHE CG CD1 doub Y N 337 PHE CG CD2 sing Y N 338 PHE CD1 CE1 sing Y N 339 PHE CD1 HD1 sing N N 340 PHE CD2 CE2 doub Y N 341 PHE CD2 HD2 sing N N 342 PHE CE1 CZ doub Y N 343 PHE CE1 HE1 sing N N 344 PHE CE2 CZ sing Y N 345 PHE CE2 HE2 sing N N 346 PHE CZ HZ sing N N 347 PHE OXT HXT sing N N 348 PRO N CA sing N N 349 PRO N CD sing N N 350 PRO N H sing N N 351 PRO CA C sing N N 352 PRO CA CB sing N N 353 PRO CA HA sing N N 354 PRO C O doub N N 355 PRO C OXT sing N N 356 PRO CB CG sing N N 357 PRO CB HB2 sing N N 358 PRO CB HB3 sing N N 359 PRO CG CD sing N N 360 PRO CG HG2 sing N N 361 PRO CG HG3 sing N N 362 PRO CD HD2 sing N N 363 PRO CD HD3 sing N N 364 PRO OXT HXT sing N N 365 SER N CA sing N N 366 SER N H sing N N 367 SER N H2 sing N N 368 SER CA C sing N N 369 SER CA CB sing N N 370 SER CA HA sing N N 371 SER C O doub N N 372 SER C OXT sing N N 373 SER CB OG sing N N 374 SER CB HB2 sing N N 375 SER CB HB3 sing N N 376 SER OG HG sing N N 377 SER OXT HXT sing N N 378 THR N CA sing N N 379 THR N H sing N N 380 THR N H2 sing N N 381 THR CA C sing N N 382 THR CA CB sing N N 383 THR CA HA sing N N 384 THR C O doub N N 385 THR C OXT sing N N 386 THR CB OG1 sing N N 387 THR CB CG2 sing N N 388 THR CB HB sing N N 389 THR OG1 HG1 sing N N 390 THR CG2 HG21 sing N N 391 THR CG2 HG22 sing N N 392 THR CG2 HG23 sing N N 393 THR OXT HXT sing N N 394 TYR N CA sing N N 395 TYR N H sing N N 396 TYR N H2 sing N N 397 TYR CA C sing N N 398 TYR CA CB sing N N 399 TYR CA HA sing N N 400 TYR C O doub N N 401 TYR C OXT sing N N 402 TYR CB CG sing N N 403 TYR CB HB2 sing N N 404 TYR CB HB3 sing N N 405 TYR CG CD1 doub Y N 406 TYR CG CD2 sing Y N 407 TYR CD1 CE1 sing Y N 408 TYR CD1 HD1 sing N N 409 TYR CD2 CE2 doub Y N 410 TYR CD2 HD2 sing N N 411 TYR CE1 CZ doub Y N 412 TYR CE1 HE1 sing N N 413 TYR CE2 CZ sing Y N 414 TYR CE2 HE2 sing N N 415 TYR CZ OH sing N N 416 TYR OH HH sing N N 417 TYR OXT HXT sing N N 418 VAL N CA sing N N 419 VAL N H sing N N 420 VAL N H2 sing N N 421 VAL CA C sing N N 422 VAL CA CB sing N N 423 VAL CA HA sing N N 424 VAL C O doub N N 425 VAL C OXT sing N N 426 VAL CB CG1 sing N N 427 VAL CB CG2 sing N N 428 VAL CB HB sing N N 429 VAL CG1 HG11 sing N N 430 VAL CG1 HG12 sing N N 431 VAL CG1 HG13 sing N N 432 VAL CG2 HG21 sing N N 433 VAL CG2 HG22 sing N N 434 VAL CG2 HG23 sing N N 435 VAL OXT HXT sing N N 436 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 1I9 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 1I9 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 7NA4 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.017942 _atom_sites.fract_transf_matrix[1][2] 0.010359 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020717 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009872 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL N O S # loop_