HEADER IMMUNE SYSTEM 19-JUN-21 7NA5 TITLE STRUCTURE OF THE H2DB-TCR TERNARY COMPLEX WITH HSF2 MELANOMA TITLE 2 NEOANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-304; COMPND 5 SYNONYM: H-2D(B); COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 21-119; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: HEAT SHOCK FACTOR PROTEIN 2; COMPND 14 CHAIN: C; COMPND 15 FRAGMENT: UNP RESIDUES 68-76; COMPND 16 SYNONYM: HSF 2,HEAT SHOCK TRANSCRIPTION FACTOR 2,HSTF 2; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: 47BE7 TCR ALPHA CHAIN; COMPND 21 CHAIN: D; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: 47BE7 TCR BETA CHAIN; COMPND 25 CHAIN: E; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_COMMON: MOUSE; SOURCE 19 ORGANISM_TAXID: 10090; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 22 ORGANISM_COMMON: MOUSE; SOURCE 23 ORGANISM_TAXID: 10090; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 25 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PET30; SOURCE 28 MOL_ID: 5; SOURCE 29 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 30 ORGANISM_COMMON: MOUSE; SOURCE 31 ORGANISM_TAXID: 10090; SOURCE 32 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 33 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 34 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 35 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS NEOANTIGEN, CANCER, MELANOMA, B16, MOUSE, H2DB, TCR, TCR-MHC COMPLEX, KEYWDS 2 ANCHOR RESIDUE MUTATION, HSF2, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,J.FINNIGAN,L.PATSKOVSKA,J.NEWMAN,N.BHARDWAJ,M.KROGSGAARD REVDAT 3 09-OCT-24 7NA5 1 REMARK REVDAT 2 18-OCT-23 7NA5 1 REMARK REVDAT 1 22-JUN-22 7NA5 0 JRNL AUTH Y.PATSKOVSKY,J.FINNIGAN,L.PATSKOVSKA,J.NEWMAN,N.BHARDWAJ, JRNL AUTH 2 M.KROGSGAARD JRNL TITL STRUCTURE OF THE TCR-H2DB TERNARY COMPLEX WITH MELANOMA HSF2 JRNL TITL 2 NEOANTIGEN YGFRNVVHI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 34250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1073 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2411 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6370 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.25000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : -1.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.441 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.242 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.616 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6660 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5744 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9044 ; 1.432 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13358 ; 1.197 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 800 ; 7.573 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 363 ;32.697 ;22.590 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1015 ;16.972 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;18.851 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 824 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7467 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1448 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 0.80 REMARK 3 ION PROBE RADIUS : 0.50 REMARK 3 SHRINKAGE RADIUS : 0.50 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7NA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100.000 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : SI 111 CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35345 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.16100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 7N9J REMARK 200 REMARK 200 REMARK: RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1 M BIS-TRIS, PH 5.5, REMARK 280 0.2 M LITHIUM SULFATE, 15% GLYCEROL, PH 5.50, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.90550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.90550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 77.71950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 95.85500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 77.71950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 95.85500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.90550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 77.71950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 95.85500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.90550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 77.71950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 95.85500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 105 REMARK 465 ASP A 106 REMARK 465 THR A 280 REMARK 465 MET B 0 REMARK 465 MET D 0 REMARK 465 GLN D 1 REMARK 465 THR D 146 REMARK 465 MET D 147 REMARK 465 GLU D 148 REMARK 465 ASN D 176 REMARK 465 GLN D 177 REMARK 465 THR D 178 REMARK 465 SER D 179 REMARK 465 PHE D 180 REMARK 465 ASN D 190 REMARK 465 MET E 1 REMARK 465 ASP E 2 REMARK 465 PRO E 3 REMARK 465 CYS E 242 REMARK 465 GLY E 243 REMARK 465 ILE E 244 REMARK 465 THR E 245 REMARK 465 SER E 246 REMARK 465 ALA E 247 REMARK 465 SER E 248 REMARK 465 TYR E 249 REMARK 465 GLN E 250 REMARK 465 GLN E 251 REMARK 465 GLY E 252 REMARK 465 GLY E 253 REMARK 465 SER E 254 REMARK 465 GLY E 255 REMARK 465 GLY E 256 REMARK 465 SER E 257 REMARK 465 HIS E 258 REMARK 465 HIS E 259 REMARK 465 HIS E 260 REMARK 465 HIS E 261 REMARK 465 HIS E 262 REMARK 465 HIS E 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 TRP A 107 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 107 CZ3 CH2 REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 181 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 LYS D 3 CG CD CE NZ REMARK 470 GLN D 120 CG CD OE1 NE2 REMARK 470 LYS D 122 CG CD CE NZ REMARK 470 ARG D 125 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 127 CG CD OE1 NE2 REMARK 470 LYS D 145 CG CD CE NZ REMARK 470 LYS D 162 CG CD CE NZ REMARK 470 MET D 164 CG SD CE REMARK 470 ILE D 185 CG1 CG2 CD1 REMARK 470 LYS D 187 CG CD CE NZ REMARK 470 GLU D 188 CG CD OE1 OE2 REMARK 470 THR D 189 OG1 CG2 REMARK 470 LYS E 10 CG CD CE NZ REMARK 470 LYS E 41 CG CD CE NZ REMARK 470 LYS E 42 CG CD CE NZ REMARK 470 LYS E 71 CG CD CE NZ REMARK 470 LYS E 72 CG CD CE NZ REMARK 470 GLU E 116 CG CD OE1 OE2 REMARK 470 ARG E 119 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 125 CG CD CE NZ REMARK 470 LYS E 133 CG CD CE NZ REMARK 470 LYS E 179 CG CD CE NZ REMARK 470 GLU E 216 CG CD OE1 OE2 REMARK 470 GLU E 217 CG CD OE1 OE2 REMARK 470 LYS E 219 CG CD CE NZ REMARK 470 GLU E 222 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 108 -161.46 -118.59 REMARK 500 ARG A 194 -56.50 -120.99 REMARK 500 LYS A 196 109.61 -59.90 REMARK 500 TRP B 60 -15.22 84.75 REMARK 500 ALA D 85 -178.23 -177.93 REMARK 500 TYR D 94 -120.46 61.90 REMARK 500 ASN D 113 62.00 61.54 REMARK 500 LEU E 44 111.30 -162.25 REMARK 500 TYR E 52 49.16 37.19 REMARK 500 MET E 56 -74.32 -104.31 REMARK 500 SER E 69 28.23 -140.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 7NA5 A 1 280 UNP P01899 HA11_MOUSE 25 304 DBREF 7NA5 B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 7NA5 C 1 9 UNP P38533 HSF2_MOUSE 68 76 DBREF 7NA5 D 0 190 PDB 7NA5 7NA5 0 190 DBREF 7NA5 E 1 263 PDB 7NA5 7NA5 1 263 SEQADV 7NA5 MET A 0 UNP P01899 INITIATING METHIONINE SEQADV 7NA5 MET B 0 UNP P61769 INITIATING METHIONINE SEQADV 7NA5 ASN C 5 UNP P38533 LYS 72 ENGINEERED MUTATION SEQRES 1 A 281 MET GLY PRO HIS SER MET ARG TYR PHE GLU THR ALA VAL SEQRES 2 A 281 SER ARG PRO GLY LEU GLU GLU PRO ARG TYR ILE SER VAL SEQRES 3 A 281 GLY TYR VAL ASP ASN LYS GLU PHE VAL ARG PHE ASP SER SEQRES 4 A 281 ASP ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA PRO TRP SEQRES 5 A 281 MET GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR SEQRES 6 A 281 GLN LYS ALA LYS GLY GLN GLU GLN TRP PHE ARG VAL SER SEQRES 7 A 281 LEU ARG ASN LEU LEU GLY TYR TYR ASN GLN SER ALA GLY SEQRES 8 A 281 GLY SER HIS THR LEU GLN GLN MET SER GLY CYS ASP LEU SEQRES 9 A 281 GLY SER ASP TRP ARG LEU LEU ARG GLY TYR LEU GLN PHE SEQRES 10 A 281 ALA TYR GLU GLY ARG ASP TYR ILE ALA LEU ASN GLU ASP SEQRES 11 A 281 LEU LYS THR TRP THR ALA ALA ASP MET ALA ALA GLN ILE SEQRES 12 A 281 THR ARG ARG LYS TRP GLU GLN SER GLY ALA ALA GLU HIS SEQRES 13 A 281 TYR LYS ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU SEQRES 14 A 281 HIS ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG SEQRES 15 A 281 THR ASP SER PRO LYS ALA HIS VAL THR HIS HIS PRO ARG SEQRES 16 A 281 SER LYS GLY GLU VAL THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 A 281 PHE TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN SEQRES 18 A 281 GLY GLU GLU LEU THR GLN ASP MET GLU LEU VAL GLU THR SEQRES 19 A 281 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER SEQRES 20 A 281 VAL VAL VAL PRO LEU GLY LYS GLU GLN ASN TYR THR CYS SEQRES 21 A 281 ARG VAL TYR HIS GLU GLY LEU PRO GLU PRO LEU THR LEU SEQRES 22 A 281 ARG TRP GLU PRO PRO PRO SER THR SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 TYR GLY PHE ARG ASN VAL VAL HIS ILE SEQRES 1 D 191 MET GLN GLN LYS VAL GLN GLN SER PRO GLU SER LEU ILE SEQRES 2 D 191 VAL PRO GLU GLY GLY MET ALA SER LEU ASN CYS THR PHE SEQRES 3 D 191 SER ASP ARG ASN SER GLN TYR PHE TRP TRP TYR ARG GLN SEQRES 4 D 191 HIS SER GLY GLU GLY PRO LYS ALA LEU MET SER ILE PHE SEQRES 5 D 191 SER ASN GLY ASP LYS LYS GLU GLY ARG PHE THR ALA HIS SEQRES 6 D 191 LEU ASN LYS ALA SER LEU HIS VAL SER LEU HIS ILE LYS SEQRES 7 D 191 ASP SER GLN PRO SER ASP SER ALA LEU TYR PHE CYS ALA SEQRES 8 D 191 VAL SER ASN TYR ASN VAL LEU TYR PHE GLY SER GLY THR SEQRES 9 D 191 LYS LEU THR VAL GLU PRO ASN ILE GLN ASN PRO GLU PRO SEQRES 10 D 191 ALA VAL TYR GLN LEU LYS ASP PRO ARG SER GLN ASP SER SEQRES 11 D 191 THR LEU CYS LEU PHE THR ASP PHE ASP SER GLN ILE ASN SEQRES 12 D 191 VAL PRO LYS THR MET GLU SER GLY THR PHE ILE THR ASP SEQRES 13 D 191 LYS CYS VAL LEU ASP MET LYS ALA MET ASP SER LYS SER SEQRES 14 D 191 ASN GLY ALA ILE ALA TRP SER ASN GLN THR SER PHE THR SEQRES 15 D 191 CYS GLN ASP ILE PHE LYS GLU THR ASN SEQRES 1 E 263 MET ASP PRO LYS ILE ILE GLN LYS PRO LYS TYR LEU VAL SEQRES 2 E 263 ALA VAL THR GLY SER GLU LYS ILE LEU ILE CYS GLU GLN SEQRES 3 E 263 TYR LEU GLY HIS ASN ALA MET TYR TRP TYR ARG GLN SER SEQRES 4 E 263 ALA LYS LYS PRO LEU GLU PHE MET PHE SER TYR SER TYR SEQRES 5 E 263 GLN LYS LEU MET ASP ASN GLN THR ALA SER SER ARG PHE SEQRES 6 E 263 GLN PRO GLN SER SER LYS LYS ASN HIS LEU ASP LEU GLN SEQRES 7 E 263 ILE THR ALA LEU LYS PRO ASP ASP SER ALA THR TYR PHE SEQRES 8 E 263 CYS ALA SER SER GLN GLU PRO GLY GLY TYR ALA GLU GLN SEQRES 9 E 263 PHE PHE GLY PRO GLY THR ARG LEU THR VAL LEU GLU ASP SEQRES 10 E 263 LEU ARG ASN VAL THR PRO PRO LYS VAL SER LEU PHE GLU SEQRES 11 E 263 PRO SER LYS ALA GLU ILE ALA ASN LYS GLN LYS ALA THR SEQRES 12 E 263 LEU VAL CYS LEU ALA ARG GLY PHE PHE PRO ASP HIS VAL SEQRES 13 E 263 GLU LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER SEQRES 14 E 263 GLY VAL CYS THR ASP PRO GLN ALA TYR LYS GLU SER ASN SEQRES 15 E 263 TYR SER TYR SER LEU SER SER ARG LEU ARG VAL SER ALA SEQRES 16 E 263 THR PHE TRP HIS ASN PRO ARG ASN HIS PHE ARG CYS GLN SEQRES 17 E 263 VAL GLN PHE HIS GLY LEU SER GLU GLU ASP LYS TRP PRO SEQRES 18 E 263 GLU GLY SER PRO LYS PRO VAL THR GLN ASN ILE SER ALA SEQRES 19 E 263 GLU ALA TRP GLY ARG ALA ASP CYS GLY ILE THR SER ALA SEQRES 20 E 263 SER TYR GLN GLN GLY GLY SER GLY GLY SER HIS HIS HIS SEQRES 21 E 263 HIS HIS HIS HET GOL A 301 6 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HET GOL A 306 6 HET SO4 A 307 5 HET GOL B 101 6 HET GOL B 102 6 HET GOL C 101 6 HET GOL D 201 6 HET SO4 D 202 5 HET GOL E 301 6 HET GOL E 302 6 HET GOL E 303 6 HET SO4 E 304 5 HET SO4 E 305 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 6 GOL 13(C3 H8 O3) FORMUL 12 SO4 4(O4 S 2-) FORMUL 23 HOH *208(H2 O) HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 ASN A 86 1 31 HELIX 3 AA3 ASP A 137 SER A 150 1 14 HELIX 4 AA4 GLY A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 ARG A 181 1 20 HELIX 6 AA6 LYS A 253 GLN A 255 5 3 HELIX 7 AA7 LYS D 67 SER D 69 5 3 HELIX 8 AA8 GLN D 80 SER D 84 5 5 HELIX 9 AA9 CYS D 182 GLU D 188 1 7 HELIX 10 AB1 LYS E 83 SER E 87 5 5 HELIX 11 AB2 SER E 132 GLN E 140 1 9 HELIX 12 AB3 ALA E 195 HIS E 199 1 5 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 LYS A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N VAL A 28 O LYS A 31 SHEET 4 AA1 8 SER A 4 VAL A 12 -1 N THR A 10 O ILE A 23 SHEET 5 AA1 8 THR A 94 LEU A 103 -1 O GLN A 97 N GLU A 9 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O TYR A 113 N GLY A 100 SHEET 7 AA1 8 ARG A 121 LEU A 126 -1 O LEU A 126 N LEU A 114 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 SER A 195 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 GLU A 229 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 AA3 4 LYS A 186 SER A 195 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 LEU A 224 0 SHEET 2 AA4 4 THR A 214 LEU A 219 -1 N TRP A 217 O LEU A 224 SHEET 3 AA4 4 TYR A 257 TYR A 262 -1 O ARG A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA8 5 GLN D 5 SER D 7 0 SHEET 2 AA8 5 ALA D 19 THR D 24 -1 O ASN D 22 N SER D 7 SHEET 3 AA8 5 HIS D 71 ILE D 76 -1 O LEU D 74 N LEU D 21 SHEET 4 AA8 5 PHE D 61 ASN D 66 -1 N HIS D 64 O SER D 73 SHEET 5 AA8 5 GLY D 54 GLU D 58 -1 N GLU D 58 O PHE D 61 SHEET 1 AA9 5 SER D 10 PRO D 14 0 SHEET 2 AA9 5 THR D 103 GLU D 108 1 O LYS D 104 N LEU D 11 SHEET 3 AA9 5 ALA D 85 ASN D 93 -1 N ALA D 85 O LEU D 105 SHEET 4 AA9 5 TYR D 32 GLN D 38 -1 N GLN D 38 O LEU D 86 SHEET 5 AA9 5 LYS D 45 ILE D 50 -1 O LEU D 47 N TRP D 35 SHEET 1 AB1 4 SER D 10 PRO D 14 0 SHEET 2 AB1 4 THR D 103 GLU D 108 1 O LYS D 104 N LEU D 11 SHEET 3 AB1 4 ALA D 85 ASN D 93 -1 N ALA D 85 O LEU D 105 SHEET 4 AB1 4 VAL D 96 PHE D 99 -1 O TYR D 98 N VAL D 91 SHEET 1 AB2 4 ALA D 117 LYS D 122 0 SHEET 2 AB2 4 THR D 130 THR D 135 -1 O LEU D 133 N TYR D 119 SHEET 3 AB2 4 SER D 166 TRP D 174 -1 O ALA D 171 N PHE D 134 SHEET 4 AB2 4 PHE D 152 ILE D 153 -1 N PHE D 152 O TRP D 174 SHEET 1 AB3 4 ALA D 117 LYS D 122 0 SHEET 2 AB3 4 THR D 130 THR D 135 -1 O LEU D 133 N TYR D 119 SHEET 3 AB3 4 SER D 166 TRP D 174 -1 O ALA D 171 N PHE D 134 SHEET 4 AB3 4 CYS D 157 MET D 161 -1 N CYS D 157 O GLY D 170 SHEET 1 AB4 4 ILE E 5 LYS E 8 0 SHEET 2 AB4 4 LYS E 20 GLN E 26 -1 O GLU E 25 N ILE E 6 SHEET 3 AB4 4 ASP E 76 ILE E 79 -1 O LEU E 77 N LEU E 22 SHEET 4 AB4 4 PHE E 65 GLN E 68 -1 N GLN E 66 O GLN E 78 SHEET 1 AB5 6 TYR E 11 VAL E 15 0 SHEET 2 AB5 6 THR E 110 LEU E 115 1 O THR E 113 N LEU E 12 SHEET 3 AB5 6 ALA E 88 SER E 95 -1 N ALA E 88 O LEU E 112 SHEET 4 AB5 6 ALA E 32 GLN E 38 -1 N GLN E 38 O THR E 89 SHEET 5 AB5 6 GLU E 45 SER E 51 -1 O PHE E 48 N TRP E 35 SHEET 6 AB5 6 LYS E 54 ASN E 58 -1 O MET E 56 N SER E 49 SHEET 1 AB6 4 TYR E 11 VAL E 15 0 SHEET 2 AB6 4 THR E 110 LEU E 115 1 O THR E 113 N LEU E 12 SHEET 3 AB6 4 ALA E 88 SER E 95 -1 N ALA E 88 O LEU E 112 SHEET 4 AB6 4 PHE E 105 PHE E 106 -1 O PHE E 105 N SER E 94 SHEET 1 AB7 4 LYS E 125 PHE E 129 0 SHEET 2 AB7 4 LYS E 141 PHE E 151 -1 O VAL E 145 N PHE E 129 SHEET 3 AB7 4 SER E 184 SER E 194 -1 O SER E 189 N CYS E 146 SHEET 4 AB7 4 VAL E 171 THR E 173 -1 N CYS E 172 O ARG E 190 SHEET 1 AB8 4 LYS E 125 PHE E 129 0 SHEET 2 AB8 4 LYS E 141 PHE E 151 -1 O VAL E 145 N PHE E 129 SHEET 3 AB8 4 SER E 184 SER E 194 -1 O SER E 189 N CYS E 146 SHEET 4 AB8 4 TYR E 178 SER E 181 -1 N TYR E 178 O SER E 186 SHEET 1 AB9 4 LYS E 165 VAL E 167 0 SHEET 2 AB9 4 VAL E 156 VAL E 162 -1 N TRP E 160 O VAL E 167 SHEET 3 AB9 4 HIS E 204 PHE E 211 -1 O GLN E 208 N SER E 159 SHEET 4 AB9 4 GLN E 230 TRP E 237 -1 O ALA E 236 N PHE E 205 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.08 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.04 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.02 SSBOND 4 CYS D 23 CYS D 89 1555 1555 2.09 SSBOND 5 CYS D 132 CYS D 182 1555 1555 2.03 SSBOND 6 CYS D 157 CYS E 172 1555 1555 2.03 SSBOND 7 CYS E 24 CYS E 92 1555 1555 1.97 SSBOND 8 CYS E 146 CYS E 207 1555 1555 1.98 CISPEP 1 TYR A 209 PRO A 210 0 -0.81 CISPEP 2 HIS B 31 PRO B 32 0 3.02 CISPEP 3 SER D 7 PRO D 8 0 -4.53 CISPEP 4 LYS E 8 PRO E 9 0 -16.76 CISPEP 5 PHE E 152 PRO E 153 0 3.28 CRYST1 155.439 191.710 67.811 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006433 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014747 0.00000