HEADER TOXIN 20-JUN-21 7NA9 TITLE CRYSTAL STRUCTURE OF BONT/B-LC-JSG-C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTULINUM NEUROTOXIN TYPE B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BONT/B,BONTOXILYSIN-B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: JSG-C1; COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 GENE: BOTB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 9 ORGANISM_TAXID: 30538; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NEUROTOXIN, ENZYME, INHIBITOR, ANTITOXIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR K.LAM,R.JIN REVDAT 3 18-OCT-23 7NA9 1 REMARK REVDAT 2 06-JUL-22 7NA9 1 JRNL REVDAT 1 22-DEC-21 7NA9 0 JRNL AUTH K.H.LAM,J.M.TREMBLAY,K.PERRY,K.ICHTCHENKO,C.B.SHOEMAKER, JRNL AUTH 2 R.JIN JRNL TITL PROBING THE STRUCTURE AND FUNCTION OF THE PROTEASE DOMAIN OF JRNL TITL 2 BOTULINUM NEUROTOXINS USING SINGLE-DOMAIN ANTIBODIES. JRNL REF PLOS PATHOG. V. 18 10169 2022 JRNL REFN ESSN 1553-7374 JRNL PMID 34990480 JRNL DOI 10.1371/JOURNAL.PPAT.1010169 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 61145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 3110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.6000 - 4.9200 1.00 2866 150 0.1577 0.1885 REMARK 3 2 4.9200 - 3.9100 1.00 2701 159 0.1303 0.1517 REMARK 3 3 3.9000 - 3.4100 1.00 2709 124 0.1461 0.1607 REMARK 3 4 3.4100 - 3.1000 1.00 2697 138 0.1610 0.1810 REMARK 3 5 3.1000 - 2.8800 1.00 2656 150 0.1686 0.2158 REMARK 3 6 2.8800 - 2.7100 1.00 2651 145 0.1719 0.2191 REMARK 3 7 2.7100 - 2.5700 1.00 2630 157 0.1750 0.2335 REMARK 3 8 2.5700 - 2.4600 1.00 2632 163 0.1726 0.2373 REMARK 3 9 2.4600 - 2.3700 1.00 2607 142 0.1743 0.2316 REMARK 3 10 2.3700 - 2.2800 1.00 2647 156 0.1682 0.2257 REMARK 3 11 2.2800 - 2.2100 1.00 2603 147 0.1877 0.2262 REMARK 3 12 2.2100 - 2.1500 1.00 2664 125 0.1809 0.2217 REMARK 3 13 2.1500 - 2.0900 1.00 2615 157 0.1775 0.2237 REMARK 3 14 2.0900 - 2.0400 1.00 2612 141 0.1715 0.2204 REMARK 3 15 2.0400 - 2.0000 1.00 2638 134 0.1650 0.1989 REMARK 3 16 2.0000 - 1.9500 1.00 2640 127 0.1662 0.2200 REMARK 3 17 1.9500 - 1.9100 1.00 2616 124 0.1773 0.2380 REMARK 3 18 1.9100 - 1.8800 1.00 2638 140 0.1805 0.2250 REMARK 3 19 1.8800 - 1.8400 1.00 2621 144 0.2064 0.2514 REMARK 3 20 1.8400 - 1.8100 1.00 2590 141 0.2367 0.2760 REMARK 3 21 1.8100 - 1.7800 1.00 2645 119 0.2769 0.3291 REMARK 3 22 1.7800 - 1.7600 0.91 2357 127 0.3172 0.3873 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.223 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.631 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 4705 REMARK 3 ANGLE : 1.320 6350 REMARK 3 CHIRALITY : 0.088 678 REMARK 3 PLANARITY : 0.009 828 REMARK 3 DIHEDRAL : 13.695 1785 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7473 14.0975 -34.4638 REMARK 3 T TENSOR REMARK 3 T11: 0.1717 T22: 0.2027 REMARK 3 T33: 0.1551 T12: 0.0399 REMARK 3 T13: -0.0411 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.4377 L22: 2.5309 REMARK 3 L33: 2.4137 L12: -0.9080 REMARK 3 L13: -0.5818 L23: -0.0124 REMARK 3 S TENSOR REMARK 3 S11: 0.1296 S12: 0.3145 S13: -0.0208 REMARK 3 S21: -0.3743 S22: -0.1418 S23: 0.1170 REMARK 3 S31: -0.0453 S32: -0.1958 S33: 0.0241 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9792 16.6387 -27.8271 REMARK 3 T TENSOR REMARK 3 T11: 0.1732 T22: 0.1916 REMARK 3 T33: 0.1735 T12: -0.0386 REMARK 3 T13: 0.0033 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 2.4539 L22: 3.8606 REMARK 3 L33: 2.0552 L12: -1.3775 REMARK 3 L13: -2.1083 L23: 0.5592 REMARK 3 S TENSOR REMARK 3 S11: 0.1042 S12: -0.0669 S13: 0.2859 REMARK 3 S21: -0.1409 S22: 0.0713 S23: -0.4509 REMARK 3 S31: 0.0101 S32: 0.2018 S33: -0.1213 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0953 8.3438 -26.1659 REMARK 3 T TENSOR REMARK 3 T11: 0.1389 T22: 0.1309 REMARK 3 T33: 0.1144 T12: 0.0095 REMARK 3 T13: -0.0228 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.4112 L22: 0.8603 REMARK 3 L33: 0.3737 L12: -0.4928 REMARK 3 L13: -0.3500 L23: 0.3914 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: 0.0896 S13: 0.0294 REMARK 3 S21: -0.0964 S22: -0.0687 S23: 0.0955 REMARK 3 S31: -0.0349 S32: -0.0568 S33: 0.0277 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2167 -7.1709 -18.8013 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.1387 REMARK 3 T33: 0.1817 T12: -0.0031 REMARK 3 T13: -0.0207 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.7593 L22: 0.7688 REMARK 3 L33: 1.3551 L12: -0.7305 REMARK 3 L13: -1.0806 L23: 0.3845 REMARK 3 S TENSOR REMARK 3 S11: -0.0786 S12: -0.1644 S13: -0.1435 REMARK 3 S21: 0.0746 S22: 0.0508 S23: -0.0608 REMARK 3 S31: 0.1208 S32: 0.1809 S33: 0.0352 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0773 -0.8079 -12.7590 REMARK 3 T TENSOR REMARK 3 T11: 0.1734 T22: 0.1588 REMARK 3 T33: 0.2023 T12: -0.0401 REMARK 3 T13: 0.0007 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 3.0214 L22: 1.7725 REMARK 3 L33: 0.9701 L12: -0.8362 REMARK 3 L13: 0.0754 L23: -0.1839 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: -0.1614 S13: -0.2883 REMARK 3 S21: 0.0702 S22: 0.0628 S23: 0.4076 REMARK 3 S31: 0.0540 S32: -0.1927 S33: -0.0561 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6331 -11.6388 -20.2298 REMARK 3 T TENSOR REMARK 3 T11: 0.2091 T22: 0.0954 REMARK 3 T33: 0.2528 T12: -0.0188 REMARK 3 T13: -0.0313 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 5.4354 L22: 0.4164 REMARK 3 L33: 5.5933 L12: -0.3369 REMARK 3 L13: -3.8757 L23: -0.3966 REMARK 3 S TENSOR REMARK 3 S11: -0.1374 S12: 0.0370 S13: -0.5405 REMARK 3 S21: -0.0327 S22: 0.0146 S23: 0.0841 REMARK 3 S31: 0.3085 S32: -0.1475 S33: 0.2373 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 366 THROUGH 441 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5471 -5.4864 -34.8355 REMARK 3 T TENSOR REMARK 3 T11: 0.1716 T22: 0.1385 REMARK 3 T33: 0.1455 T12: 0.0229 REMARK 3 T13: 0.0121 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 2.4697 L22: 1.9957 REMARK 3 L33: 1.0183 L12: -0.1527 REMARK 3 L13: 0.1311 L23: -0.3354 REMARK 3 S TENSOR REMARK 3 S11: 0.0430 S12: 0.2477 S13: -0.1339 REMARK 3 S21: -0.1185 S22: -0.0461 S23: -0.1403 REMARK 3 S31: 0.0372 S32: 0.0520 S33: -0.0154 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID -4 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0883 1.7663 -1.1157 REMARK 3 T TENSOR REMARK 3 T11: 0.3531 T22: 0.2853 REMARK 3 T33: 0.2656 T12: 0.0217 REMARK 3 T13: -0.0568 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 3.2071 L22: 9.9792 REMARK 3 L33: 8.1208 L12: -0.5905 REMARK 3 L13: -0.5802 L23: 5.4581 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: 0.1862 S13: -0.2846 REMARK 3 S21: 0.2339 S22: 0.2458 S23: -0.6644 REMARK 3 S31: 1.0081 S32: 0.3755 S33: -0.1345 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 8 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7989 14.8339 1.9277 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.1673 REMARK 3 T33: 0.2042 T12: -0.0327 REMARK 3 T13: -0.0267 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 2.4386 L22: 3.6351 REMARK 3 L33: 3.4878 L12: -0.4438 REMARK 3 L13: 0.2348 L23: 0.3177 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: -0.2940 S13: 0.3143 REMARK 3 S21: 0.2940 S22: 0.0724 S23: -0.2618 REMARK 3 S31: -0.0254 S32: 0.1397 S33: -0.1608 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 34 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3179 10.9647 0.5239 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.2270 REMARK 3 T33: 0.1531 T12: 0.0204 REMARK 3 T13: -0.0039 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 4.6164 L22: 4.4231 REMARK 3 L33: 3.3867 L12: 3.7340 REMARK 3 L13: 0.7105 L23: -1.1582 REMARK 3 S TENSOR REMARK 3 S11: 0.0692 S12: -0.4647 S13: 0.1228 REMARK 3 S21: 0.0699 S22: -0.0232 S23: 0.1437 REMARK 3 S31: 0.1181 S32: -0.3270 S33: -0.0009 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 46 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8523 20.5827 -5.3467 REMARK 3 T TENSOR REMARK 3 T11: 0.1880 T22: 0.1100 REMARK 3 T33: 0.1778 T12: 0.0152 REMARK 3 T13: -0.0345 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 4.3737 L22: 3.5975 REMARK 3 L33: 4.2492 L12: 0.3336 REMARK 3 L13: -0.2255 L23: -0.1841 REMARK 3 S TENSOR REMARK 3 S11: -0.1323 S12: 0.2417 S13: 0.6975 REMARK 3 S21: 0.0361 S22: 0.1030 S23: 0.0710 REMARK 3 S31: -0.4052 S32: -0.1479 S33: -0.0038 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 77 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6425 17.3019 4.2513 REMARK 3 T TENSOR REMARK 3 T11: 0.1941 T22: 0.1918 REMARK 3 T33: 0.1591 T12: 0.0296 REMARK 3 T13: -0.0179 T23: -0.0619 REMARK 3 L TENSOR REMARK 3 L11: 2.9404 L22: 2.8972 REMARK 3 L33: 3.8316 L12: 0.6313 REMARK 3 L13: -1.4039 L23: 0.3537 REMARK 3 S TENSOR REMARK 3 S11: 0.1301 S12: -0.1114 S13: 0.4163 REMARK 3 S21: 0.2506 S22: -0.1252 S23: 0.1419 REMARK 3 S31: -0.2740 S32: -0.2067 S33: 0.0175 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 99 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5018 11.6995 -13.3339 REMARK 3 T TENSOR REMARK 3 T11: 0.2313 T22: 0.1847 REMARK 3 T33: 0.1403 T12: -0.0078 REMARK 3 T13: -0.0151 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 0.0917 L22: 2.4415 REMARK 3 L33: 2.5554 L12: -0.2518 REMARK 3 L13: 0.3205 L23: -2.4627 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: 0.0303 S13: 0.0203 REMARK 3 S21: -0.1728 S22: 0.0122 S23: 0.0646 REMARK 3 S31: 0.0929 S32: 0.0901 S33: 0.0141 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 116 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3352 9.9830 3.9145 REMARK 3 T TENSOR REMARK 3 T11: 0.2470 T22: 0.2255 REMARK 3 T33: 0.1438 T12: 0.0135 REMARK 3 T13: -0.0360 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 3.7862 L22: 4.8387 REMARK 3 L33: 2.8801 L12: -1.2433 REMARK 3 L13: -2.3650 L23: 3.1792 REMARK 3 S TENSOR REMARK 3 S11: -0.0902 S12: -0.5089 S13: 0.0502 REMARK 3 S21: 0.5393 S22: 0.0179 S23: 0.1701 REMARK 3 S31: 0.1791 S32: -0.0174 S33: 0.0810 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000254061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.18.2_3874 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61223 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 101.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1F82 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.70850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.95200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.50900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.95200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.70850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.50900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 62 REMARK 465 SER A 63 REMARK 465 GLY A 64 REMARK 465 ILE A 65 REMARK 465 PHE A 66 REMARK 465 ASN A 67 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 12.81 57.74 REMARK 500 ASN A 17 -82.45 -117.06 REMARK 500 ARG A 42 -17.83 78.00 REMARK 500 ASN A 132 48.89 -82.59 REMARK 500 ASN A 385 98.26 -165.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1046 DISTANCE = 6.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 230 NE2 REMARK 620 2 HIS A 234 NE2 99.4 REMARK 620 3 GLU A 268 OE1 113.8 86.4 REMARK 620 4 HOH A 649 O 92.4 164.7 97.9 REMARK 620 N 1 2 3 DBREF 7NA9 A 1 441 UNP P10844 BXB_CLOBO 1 441 DBREF 7NA9 D -4 129 PDB 7NA9 7NA9 -4 129 SEQADV 7NA9 GLY A -4 UNP P10844 EXPRESSION TAG SEQADV 7NA9 PRO A -3 UNP P10844 EXPRESSION TAG SEQADV 7NA9 LEU A -2 UNP P10844 EXPRESSION TAG SEQADV 7NA9 GLY A -1 UNP P10844 EXPRESSION TAG SEQADV 7NA9 SER A 0 UNP P10844 EXPRESSION TAG SEQRES 1 A 446 GLY PRO LEU GLY SER MET PRO VAL THR ILE ASN ASN PHE SEQRES 2 A 446 ASN TYR ASN ASP PRO ILE ASP ASN ASN ASN ILE ILE MET SEQRES 3 A 446 MET GLU PRO PRO PHE ALA ARG GLY THR GLY ARG TYR TYR SEQRES 4 A 446 LYS ALA PHE LYS ILE THR ASP ARG ILE TRP ILE ILE PRO SEQRES 5 A 446 GLU ARG TYR THR PHE GLY TYR LYS PRO GLU ASP PHE ASN SEQRES 6 A 446 LYS SER SER GLY ILE PHE ASN ARG ASP VAL CYS GLU TYR SEQRES 7 A 446 TYR ASP PRO ASP TYR LEU ASN THR ASN ASP LYS LYS ASN SEQRES 8 A 446 ILE PHE LEU GLN THR MET ILE LYS LEU PHE ASN ARG ILE SEQRES 9 A 446 LYS SER LYS PRO LEU GLY GLU LYS LEU LEU GLU MET ILE SEQRES 10 A 446 ILE ASN GLY ILE PRO TYR LEU GLY ASP ARG ARG VAL PRO SEQRES 11 A 446 LEU GLU GLU PHE ASN THR ASN ILE ALA SER VAL THR VAL SEQRES 12 A 446 ASN LYS LEU ILE SER ASN PRO GLY GLU VAL GLU ARG LYS SEQRES 13 A 446 LYS GLY ILE PHE ALA ASN LEU ILE ILE PHE GLY PRO GLY SEQRES 14 A 446 PRO VAL LEU ASN GLU ASN GLU THR ILE ASP ILE GLY ILE SEQRES 15 A 446 GLN ASN HIS PHE ALA SER ARG GLU GLY PHE GLY GLY ILE SEQRES 16 A 446 MET GLN MET LYS PHE CYS PRO GLU TYR VAL SER VAL PHE SEQRES 17 A 446 ASN ASN VAL GLN GLU ASN LYS GLY ALA SER ILE PHE ASN SEQRES 18 A 446 ARG ARG GLY TYR PHE SER ASP PRO ALA LEU ILE LEU MET SEQRES 19 A 446 HIS GLU LEU ILE HIS VAL LEU HIS GLY LEU TYR GLY ILE SEQRES 20 A 446 LYS VAL ASP ASP LEU PRO ILE VAL PRO ASN GLU LYS LYS SEQRES 21 A 446 PHE PHE MET GLN SER THR ASP ALA ILE GLN ALA GLU GLU SEQRES 22 A 446 LEU TYR THR PHE GLY GLY GLN ASP PRO SER ILE ILE THR SEQRES 23 A 446 PRO SER THR ASP LYS SER ILE TYR ASP LYS VAL LEU GLN SEQRES 24 A 446 ASN PHE ARG GLY ILE VAL ASP ARG LEU ASN LYS VAL LEU SEQRES 25 A 446 VAL CYS ILE SER ASP PRO ASN ILE ASN ILE ASN ILE TYR SEQRES 26 A 446 LYS ASN LYS PHE LYS ASP LYS TYR LYS PHE VAL GLU ASP SEQRES 27 A 446 SER GLU GLY LYS TYR SER ILE ASP VAL GLU SER PHE ASP SEQRES 28 A 446 LYS LEU TYR LYS SER LEU MET PHE GLY PHE THR GLU THR SEQRES 29 A 446 ASN ILE ALA GLU ASN TYR LYS ILE LYS THR ARG ALA SER SEQRES 30 A 446 TYR PHE SER ASP SER LEU PRO PRO VAL LYS ILE LYS ASN SEQRES 31 A 446 LEU LEU ASP ASN GLU ILE TYR THR ILE GLU GLU GLY PHE SEQRES 32 A 446 ASN ILE SER ASP LYS ASP MET GLU LYS GLU TYR ARG GLY SEQRES 33 A 446 GLN ASN LYS ALA ILE ASN LYS GLN ALA TYR GLU GLU ILE SEQRES 34 A 446 SER LYS GLU HIS LEU ALA VAL TYR LYS ILE GLN MET CYS SEQRES 35 A 446 LYS SER VAL LYS SEQRES 1 D 134 GLY PRO LEU GLY SER GLN VAL GLN LEU VAL GLU SER GLY SEQRES 2 D 134 GLY GLY LEU VAL GLN THR GLY GLY SER LEU ARG LEU SER SEQRES 3 D 134 CYS ALA ALA SER GLY ARG THR PHE ARG ARG ASN THR MET SEQRES 4 D 134 GLY TRP PHE ARG GLN ALA PRO GLY LYS VAL ARG GLU PHE SEQRES 5 D 134 VAL ALA ALA ILE SER TRP SER GLY ASP ARG THR TYR CYS SEQRES 6 D 134 ALA ASP SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP SEQRES 7 D 134 ASN ALA LYS ASN THR VAL ASP LEU LEU MET ASN SER LEU SEQRES 8 D 134 LYS PRO GLU ASP THR ALA ILE TYR TYR CYS ALA ALA ASP SEQRES 9 D 134 GLY THR ALA SER VAL PHE ASN SER TYR ALA SER ALA ASP SEQRES 10 D 134 ARG ASN LYS TYR ASN TYR TRP GLY GLN GLY THR GLN VAL SEQRES 11 D 134 THR VAL SER SER HET EDO A 501 4 HET EDO A 502 4 HET ZN A 503 1 HET EDO D 201 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 5 ZN ZN 2+ FORMUL 7 HOH *568(H2 O) HELIX 1 AA1 PRO A 24 ARG A 28 5 5 HELIX 2 AA2 LYS A 55 ASN A 60 5 6 HELIX 3 AA3 THR A 81 SER A 101 1 21 HELIX 4 AA4 LYS A 102 GLY A 115 1 14 HELIX 5 AA5 SER A 183 GLU A 185 5 3 HELIX 6 AA6 VAL A 206 LYS A 210 5 5 HELIX 7 AA7 SER A 213 ARG A 217 5 5 HELIX 8 AA8 ASP A 223 TYR A 240 1 18 HELIX 9 AA9 ALA A 266 GLY A 273 1 8 HELIX 10 AB1 GLN A 275 ILE A 280 5 6 HELIX 11 AB2 THR A 281 VAL A 306 1 26 HELIX 12 AB3 ASN A 316 TYR A 328 1 13 HELIX 13 AB4 ASP A 341 GLY A 355 1 15 HELIX 14 AB5 THR A 357 LYS A 366 1 10 HELIX 15 AB6 ILE A 400 ASP A 404 5 5 HELIX 16 AB7 GLU A 406 ASN A 413 5 8 HELIX 17 AB8 ASN A 417 GLN A 419 5 3 HELIX 18 AB9 SER A 425 LYS A 438 1 14 HELIX 19 AC1 LEU D -2 VAL D 2 5 5 HELIX 20 AC2 ASN D 74 LYS D 76 5 3 HELIX 21 AC3 LYS D 87 THR D 91 5 5 HELIX 22 AC4 ASN D 106 ALA D 111 1 6 HELIX 23 AC5 ASP D 112 TYR D 116 5 5 SHEET 1 AA1 8 ARG A 150 PHE A 155 0 SHEET 2 AA1 8 THR A 137 ILE A 142 -1 N ILE A 142 O ARG A 150 SHEET 3 AA1 8 ILE A 19 GLU A 23 -1 N GLU A 23 O ASN A 139 SHEET 4 AA1 8 TYR A 34 THR A 40 -1 O TYR A 34 N MET A 22 SHEET 5 AA1 8 ILE A 43 ILE A 46 -1 O ILE A 45 N PHE A 37 SHEET 6 AA1 8 LEU A 158 PHE A 161 1 O ILE A 160 N TRP A 44 SHEET 7 AA1 8 MET A 191 LYS A 194 1 O MET A 193 N PHE A 161 SHEET 8 AA1 8 GLU A 171 ILE A 173 -1 N ILE A 173 O GLN A 192 SHEET 1 AA2 2 GLU A 128 PHE A 129 0 SHEET 2 AA2 2 VAL A 308 CYS A 309 1 O VAL A 308 N PHE A 129 SHEET 1 AA3 2 GLY A 176 ILE A 177 0 SHEET 2 AA3 2 HIS A 180 PHE A 181 -1 O HIS A 180 N ILE A 177 SHEET 1 AA4 3 TYR A 199 VAL A 200 0 SHEET 2 AA4 3 VAL A 381 ILE A 383 -1 O VAL A 381 N VAL A 200 SHEET 3 AA4 3 TYR A 421 GLU A 422 -1 O GLU A 422 N LYS A 382 SHEET 1 AA5 2 VAL A 202 PHE A 203 0 SHEET 2 AA5 2 TYR A 220 PHE A 221 -1 O TYR A 220 N PHE A 203 SHEET 1 AA6 2 PRO A 248 ILE A 249 0 SHEET 2 AA6 2 ILE A 264 GLN A 265 -1 O ILE A 264 N ILE A 249 SHEET 1 AA7 2 VAL A 331 GLU A 332 0 SHEET 2 AA7 2 TYR A 338 SER A 339 -1 O SER A 339 N VAL A 331 SHEET 1 AA8 4 GLN D 3 SER D 7 0 SHEET 2 AA8 4 LEU D 18 SER D 25 -1 O SER D 21 N SER D 7 SHEET 3 AA8 4 THR D 78 MET D 83 -1 O MET D 83 N LEU D 18 SHEET 4 AA8 4 PHE D 68 ASP D 73 -1 N THR D 69 O LEU D 82 SHEET 1 AA9 6 LEU D 11 GLN D 13 0 SHEET 2 AA9 6 THR D 123 SER D 128 1 O THR D 126 N VAL D 12 SHEET 3 AA9 6 ALA D 92 ALA D 98 -1 N TYR D 94 O THR D 123 SHEET 4 AA9 6 MET D 34 GLN D 39 -1 N PHE D 37 O TYR D 95 SHEET 5 AA9 6 GLU D 46 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 AA9 6 THR D 58 CYS D 60 -1 O TYR D 59 N ALA D 50 SHEET 1 AB1 4 LEU D 11 GLN D 13 0 SHEET 2 AB1 4 THR D 123 SER D 128 1 O THR D 126 N VAL D 12 SHEET 3 AB1 4 ALA D 92 ALA D 98 -1 N TYR D 94 O THR D 123 SHEET 4 AB1 4 TYR D 118 TRP D 119 -1 O TYR D 118 N ALA D 98 LINK NE2 HIS A 230 ZN ZN A 503 1555 1555 2.31 LINK NE2 HIS A 234 ZN ZN A 503 1555 1555 2.18 LINK OE1 GLU A 268 ZN ZN A 503 1555 1555 2.15 LINK ZN ZN A 503 O HOH A 649 1555 1555 2.45 CRYST1 61.417 97.018 101.904 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010307 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009813 0.00000