HEADER OXIDOREDUCTASE 25-JAN-21 7NAY TITLE CRYSTAL STRUCTURE OF LACTATE DEHYDROGENASE FROM SELENOMONAS TITLE 2 RUMINANTIUM WITH NADH. COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-LDH; COMPND 5 EC: 1.1.1.27; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PRESENCE OF 2 MODIFIED CYSTEINES THAT ARE APPEARING COMPND 8 DURING CRYSTALLISATION PROCESS. CONFIRMED BY MASS SPECTROMETRY ON COMPND 9 DISSOLVED CRYSTALS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SELENOMONAS RUMINANTIUM; SOURCE 3 ORGANISM_TAXID: 971; SOURCE 4 GENE: LDH, LDHL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SELENOMONAS RUMINANTIUM, LACTATE DEHYDROGENASE, NADH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.BERTRAND,A.ROBIN,E.GIRARD,D.MADERN REVDAT 3 20-MAR-24 7NAY 1 JRNL REVDAT 2 31-JAN-24 7NAY 1 REMARK REVDAT 1 10-FEB-21 7NAY 0 JRNL AUTH Q.BERTRAND,S.COQUILLE,A.IORIO,F.STERPONE,D.MADERN JRNL TITL BIOCHEMICAL, STRUCTURAL AND DYNAMICAL CHARACTERIZATIONS OF JRNL TITL 2 THE LACTATE DEHYDROGENASE FROM SELENOMONAS RUMINANTIUM JRNL TITL 3 PROVIDE INFORMATION ABOUT AN INTERMEDIATE EVOLUTIONARY STEP JRNL TITL 4 PRIOR TO COMPLETE ALLOSTERIC REGULATION ACQUISITION IN THE JRNL TITL 5 SUPER FAMILY OF LACTATE AND MALATE DEHYDROGENASES. JRNL REF J.STRUCT.BIOL. V. 215 08039 2023 JRNL REFN ESSN 1095-8657 JRNL PMID 37884067 JRNL DOI 10.1016/J.JSB.2023.108039 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3196 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2095 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 233 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2496 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.30000 REMARK 3 B22 (A**2) : 0.90000 REMARK 3 B33 (A**2) : 0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.690 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2760 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2588 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3741 ; 1.596 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5980 ; 1.451 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 346 ; 6.875 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;30.614 ;22.955 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;13.160 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.776 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 373 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3144 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 595 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7NAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : XENOCS GENIX 3D CU HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20200417 REMARK 200 DATA SCALING SOFTWARE : XDS 20200417 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31954 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 38.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 3D0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21 % PEG 1500 150 MM MALONATE REMARK 280 -IMIDAZOLE-BORIC ACID PH 5 (MIB-PACT) 10 MM SODIUM BICARBONATE REMARK 280 PH 8 10 MM TB-XO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.37500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.13000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.47000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.37500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.13000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.47000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.37500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.13000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.47000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.37500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.13000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.47000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 561 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 740 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 746 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 175 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 -147.74 -93.13 REMARK 500 ILE A 123 -36.41 -130.97 REMARK 500 ASN A 235 -27.92 -158.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 409 REMARK 610 1PE A 411 DBREF 7NAY A 1 318 UNP Q9EVR0 LDH_SELRU 1 318 SEQADV 7NAY HIS A 319 UNP Q9EVR0 EXPRESSION TAG SEQADV 7NAY HIS A 320 UNP Q9EVR0 EXPRESSION TAG SEQADV 7NAY HIS A 321 UNP Q9EVR0 EXPRESSION TAG SEQADV 7NAY HIS A 322 UNP Q9EVR0 EXPRESSION TAG SEQADV 7NAY HIS A 323 UNP Q9EVR0 EXPRESSION TAG SEQADV 7NAY HIS A 324 UNP Q9EVR0 EXPRESSION TAG SEQRES 1 A 324 MET ASN ASN ARG ARG LYS ILE VAL VAL ILE GLY ALA SER SEQRES 2 A 324 ASN VAL GLY SER ALA VAL ALA ASN LYS ILE ALA ASP PHE SEQRES 3 A 324 GLN LEU ALA THR GLU VAL VAL LEU ILE ASP LEU ASN GLU SEQRES 4 A 324 ASP LYS ALA TRP GLY GLU ALA LYS ASP SER SER HIS ALA SEQRES 5 A 324 THR SER CSD ILE TYR SER THR ASN ILE LYS PHE HIS LEU SEQRES 6 A 324 GLY ASP TYR GLU ASP CYS LYS ASP ALA ASN ILE ILE VAL SEQRES 7 A 324 ILE THR ALA GLY PRO SER ILE ARG PRO GLY GLU THR PRO SEQRES 8 A 324 ASP ARG LEU LYS LEU ALA GLY THR ASN ALA LYS ILE MET SEQRES 9 A 324 SER SER VAL MET GLY GLU ILE VAL LYS ARG THR LYS GLU SEQRES 10 A 324 ALA MET ILE ILE MET ILE THR ASN PRO LEU ASP VAL ALA SEQRES 11 A 324 THR TYR VAL VAL SER THR GLN PHE ASP TYR PRO ARG ASN SEQRES 12 A 324 LEU ILE LEU GLY THR GLY THR MET LEU GLU THR TYR ARG SEQRES 13 A 324 PHE ARG ARG ILE LEU ALA ASP LYS TYR GLN VAL ASP PRO SEQRES 14 A 324 LYS ASN ILE ASN GLY TYR VAL LEU GLY GLU HIS GLY ASN SEQRES 15 A 324 ALA ALA PHE VAL ALA TRP SER THR THR GLY CYS ALA GLY SEQRES 16 A 324 PHE PRO ILE ASP ASP LEU ASP GLU TYR PHE HIS ARG THR SEQRES 17 A 324 GLU LYS LEU SER HIS GLU ALA VAL GLU GLN GLU LEU VAL SEQRES 18 A 324 GLN VAL ALA TYR ASP VAL ILE ASN LYS LYS GLY PHE THR SEQRES 19 A 324 ASN THR GLY ILE ALA MET ALA ALA CYS ARG PHE ILE LYS SEQRES 20 A 324 SER VAL LEU TYR ASP GLU HIS THR ILE LEU PRO CYS SER SEQRES 21 A 324 ALA VAL LEU GLU GLY GLU TYR GLY ILE LYS ASP VAL ALA SEQRES 22 A 324 LEU SER ILE PRO ARG MET VAL OCS ALA ASP GLY ILE MET SEQRES 23 A 324 ARG SER PHE GLU VAL HIS LEU THR ASP ASP GLU LEU GLU SEQRES 24 A 324 LYS MET HIS LYS ALA ALA GLN SER VAL ARG SER ALA LEU SEQRES 25 A 324 ASP GLY ALA GLY ILE LYS HIS HIS HIS HIS HIS HIS MODRES 7NAY CSD A 55 CYS MODIFIED RESIDUE MODRES 7NAY OCS A 281 CYS MODIFIED RESIDUE HET CSD A 55 8 HET OCS A 281 9 HET NAD A 401 44 HET MLA A 402 7 HET MLA A 403 7 HET BO3 A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET 1PE A 409 10 HET BO3 A 410 4 HET 1PE A 411 7 HET EDO A 412 4 HETNAM CSD 3-SULFINOALANINE HETNAM OCS CYSTEINESULFONIC ACID HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM MLA MALONIC ACID HETNAM BO3 BORIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID HETSYN EDO ETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 1 CSD C3 H7 N O4 S FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 MLA 2(C3 H4 O4) FORMUL 5 BO3 2(B H3 O3) FORMUL 6 EDO 5(C2 H6 O2) FORMUL 10 1PE 2(C10 H22 O6) FORMUL 14 HOH *288(H2 O) HELIX 1 AA1 SER A 13 PHE A 26 1 14 HELIX 2 AA2 ASN A 38 THR A 53 1 16 HELIX 3 AA3 ASP A 67 LYS A 72 5 6 HELIX 4 AA4 ASP A 92 LYS A 95 5 4 HELIX 5 AA5 LEU A 96 THR A 115 1 20 HELIX 6 AA6 PRO A 126 GLN A 137 1 12 HELIX 7 AA7 PRO A 141 ASN A 143 5 3 HELIX 8 AA8 THR A 150 GLN A 166 1 17 HELIX 9 AA9 ASP A 168 LYS A 170 5 3 HELIX 10 AB1 PRO A 197 ASP A 199 5 3 HELIX 11 AB2 ASP A 200 PHE A 205 1 6 HELIX 12 AB3 SER A 212 GLY A 232 1 21 HELIX 13 AB4 ASN A 235 TYR A 251 1 17 HELIX 14 AB5 GLU A 266 GLY A 268 5 3 HELIX 15 AB6 THR A 294 ALA A 315 1 22 SHEET 1 AA1 6 LYS A 62 LEU A 65 0 SHEET 2 AA1 6 GLU A 31 ILE A 35 1 N VAL A 32 O LYS A 62 SHEET 3 AA1 6 LYS A 6 ILE A 10 1 N VAL A 9 O VAL A 33 SHEET 4 AA1 6 ILE A 76 ILE A 79 1 O VAL A 78 N ILE A 10 SHEET 5 AA1 6 MET A 119 MET A 122 1 O MET A 119 N ILE A 77 SHEET 6 AA1 6 ILE A 145 GLY A 147 1 O LEU A 146 N MET A 122 SHEET 1 AA2 2 ILE A 172 GLY A 178 0 SHEET 2 AA2 2 ALA A 184 CYS A 193 -1 O GLY A 192 N ASN A 173 SHEET 1 AA3 3 THR A 255 GLU A 264 0 SHEET 2 AA3 3 LYS A 270 OCS A 281 -1 O VAL A 272 N LEU A 263 SHEET 3 AA3 3 GLY A 284 SER A 288 -1 O GLY A 284 N OCS A 281 LINK C SER A 54 N CSD A 55 1555 1555 1.34 LINK C CSD A 55 N ILE A 56 1555 1555 1.34 LINK C VAL A 280 N OCS A 281 1555 1555 1.32 LINK C OCS A 281 N ALA A 282 1555 1555 1.33 CISPEP 1 ASN A 125 PRO A 126 0 -8.45 CRYST1 62.750 104.260 110.940 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015936 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009014 0.00000