HEADER APOPTOSIS 25-JAN-21 7NB7 TITLE STRUCTURE OF MCL-1 COMPLEX WITH COMPOUND 6B COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL- COMPND 3 1; COMPND 4 CHAIN: A, B, C, D; COMPND 5 SYNONYM: BCL-2-LIKE PROTEIN 3,BCL2-L-3,BCL-2-RELATED PROTEIN COMPND 6 EAT/MCL1,MCL1/EAT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MCL1, BCL2L3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS KEYWDS APOPTOSIS, APOPTOSIS-INHIBITOR COMPLEX, MCL-1, S64315, SMALL MOLECULE KEYWDS 2 INHIBITOR, SBDD EXPDTA X-RAY DIFFRACTION AUTHOR P.DOKURNO,A.E.SURGENOR,A.KOTSCHY REVDAT 2 31-JAN-24 7NB7 1 REMARK REVDAT 1 13-OCT-21 7NB7 0 JRNL AUTH S.SIPOS,B.BALINT,Z.B.SZABO,L.ONDI,M.CSEKEI,Z.SZLAVIK, JRNL AUTH 2 A.PROSZENYAK,J.B.MURRAY,J.DAVIDSON,I.CHEN,P.DOKURNO, JRNL AUTH 3 A.E.SURGENOR,C.PEDDER,R.E.HUBBARD,A.L.MARAGNO,M.CHANRION, JRNL AUTH 4 F.COLLAND,O.GENESTE,A.KOTSCHY JRNL TITL THE EFFECT OF CORE REPLACEMENT ON S64315, A SELECTIVE MCL-1 JRNL TITL 2 INHIBITOR, AND ITS ANALOGUES. JRNL REF ACS OMEGA V. 6 22073 2021 JRNL REFN ESSN 2470-1343 JRNL PMID 34497901 JRNL DOI 10.1021/ACSOMEGA.1C02595 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 15525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 802 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2223 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4745 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 140 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : -1.32000 REMARK 3 B33 (A**2) : 0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.473 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.486 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.202 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.876 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.810 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4973 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4635 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6711 ; 1.448 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10642 ; 1.280 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 4.843 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 275 ;30.544 ;20.691 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 864 ;20.359 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;23.223 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 640 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5566 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1145 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 170 320 B 170 320 4915 0.120 0.050 REMARK 3 2 A 170 320 C 170 320 4836 0.110 0.050 REMARK 3 3 A 170 320 D 170 320 4852 0.120 0.050 REMARK 3 4 B 170 320 C 170 320 4876 0.110 0.050 REMARK 3 5 B 170 320 D 170 320 4939 0.100 0.050 REMARK 3 6 C 170 320 D 170 320 4880 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7NB7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113673. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16409 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.820 REMARK 200 RESOLUTION RANGE LOW (A) : 28.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.28000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 1.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6QZ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM CITRATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 284K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.64050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 83.05300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.64050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 83.05300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 LEU A 165 REMARK 465 VAL A 166 REMARK 465 PRO A 167 REMARK 465 ARG A 168 REMARK 465 GLY A 169 REMARK 465 VAL A 321 REMARK 465 GLU A 322 REMARK 465 ASP A 323 REMARK 465 LEU A 324 REMARK 465 GLU A 325 REMARK 465 GLY A 326 REMARK 465 GLY A 327 REMARK 465 MET B 158 REMARK 465 HIS B 159 REMARK 465 HIS B 160 REMARK 465 HIS B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 LEU B 165 REMARK 465 VAL B 166 REMARK 465 PRO B 167 REMARK 465 ARG B 168 REMARK 465 GLY B 169 REMARK 465 VAL B 321 REMARK 465 GLU B 322 REMARK 465 ASP B 323 REMARK 465 LEU B 324 REMARK 465 GLU B 325 REMARK 465 GLY B 326 REMARK 465 GLY B 327 REMARK 465 MET C 158 REMARK 465 HIS C 159 REMARK 465 HIS C 160 REMARK 465 HIS C 161 REMARK 465 HIS C 162 REMARK 465 HIS C 163 REMARK 465 HIS C 164 REMARK 465 LEU C 165 REMARK 465 VAL C 166 REMARK 465 PRO C 167 REMARK 465 ARG C 168 REMARK 465 GLY C 169 REMARK 465 VAL C 321 REMARK 465 GLU C 322 REMARK 465 ASP C 323 REMARK 465 LEU C 324 REMARK 465 GLU C 325 REMARK 465 GLY C 326 REMARK 465 GLY C 327 REMARK 465 MET D 158 REMARK 465 HIS D 159 REMARK 465 HIS D 160 REMARK 465 HIS D 161 REMARK 465 HIS D 162 REMARK 465 HIS D 163 REMARK 465 HIS D 164 REMARK 465 LEU D 165 REMARK 465 VAL D 166 REMARK 465 PRO D 167 REMARK 465 ARG D 168 REMARK 465 GLY D 169 REMARK 465 VAL D 321 REMARK 465 GLU D 322 REMARK 465 ASP D 323 REMARK 465 LEU D 324 REMARK 465 GLU D 325 REMARK 465 GLY D 326 REMARK 465 GLY D 327 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 ARG A 201 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 320 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 ARG B 201 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 240 CG CD OE1 OE2 REMARK 470 ASP B 241 CG OD1 OD2 REMARK 470 LYS B 244 CG CD CE NZ REMARK 470 ARG B 248 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 320 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 197 CG CD CE NZ REMARK 470 ARG C 201 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 240 CG CD OE1 OE2 REMARK 470 ASP C 241 CG OD1 OD2 REMARK 470 LYS C 244 CG CD CE NZ REMARK 470 ARG C 248 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 320 CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 197 CG CD CE NZ REMARK 470 GLU D 240 CG CD OE1 OE2 REMARK 470 ASP D 241 CG OD1 OD2 REMARK 470 LYS D 244 CG CD CE NZ REMARK 470 ARG D 248 CG CD NE CZ NH1 NH2 REMARK 470 HIS D 320 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 U6N B 401 O HOH B 501 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 198 N - CA - CB ANGL. DEV. = -8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 197 116.03 -161.36 REMARK 500 PRO A 198 -101.41 2.74 REMARK 500 MET A 199 -62.46 177.47 REMARK 500 GLN A 283 40.63 -140.26 REMARK 500 ARG A 310 36.96 70.92 REMARK 500 PHE A 319 64.50 -101.78 REMARK 500 GLN B 283 40.37 -140.10 REMARK 500 ARG B 310 37.08 70.95 REMARK 500 GLN C 283 41.28 -140.66 REMARK 500 ARG C 310 37.81 71.14 REMARK 500 PHE C 319 55.74 -97.03 REMARK 500 SER D 202 72.80 53.24 REMARK 500 GLN D 283 40.59 -140.42 REMARK 500 ARG D 310 36.95 71.78 REMARK 500 PHE D 319 30.47 -97.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U6N A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U6N B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U6N C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U6N D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YBL RELATED DB: PDB REMARK 900 RELATED ID: 7NB4 RELATED DB: PDB DBREF 7NB7 A 171 327 UNP Q07820 MCL1_HUMAN 171 327 DBREF 7NB7 B 171 327 UNP Q07820 MCL1_HUMAN 171 327 DBREF 7NB7 C 171 327 UNP Q07820 MCL1_HUMAN 171 327 DBREF 7NB7 D 171 327 UNP Q07820 MCL1_HUMAN 171 327 SEQADV 7NB7 MET A 158 UNP Q07820 INITIATING METHIONINE SEQADV 7NB7 HIS A 159 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS A 160 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS A 161 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS A 162 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS A 163 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS A 164 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 LEU A 165 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 VAL A 166 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 PRO A 167 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 ARG A 168 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 GLY A 169 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 SER A 170 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 MET B 158 UNP Q07820 INITIATING METHIONINE SEQADV 7NB7 HIS B 159 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS B 160 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS B 161 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS B 162 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS B 163 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS B 164 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 LEU B 165 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 VAL B 166 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 PRO B 167 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 ARG B 168 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 GLY B 169 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 SER B 170 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 MET C 158 UNP Q07820 INITIATING METHIONINE SEQADV 7NB7 HIS C 159 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS C 160 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS C 161 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS C 162 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS C 163 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS C 164 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 LEU C 165 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 VAL C 166 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 PRO C 167 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 ARG C 168 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 GLY C 169 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 SER C 170 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 MET D 158 UNP Q07820 INITIATING METHIONINE SEQADV 7NB7 HIS D 159 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS D 160 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS D 161 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS D 162 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS D 163 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 HIS D 164 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 LEU D 165 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 VAL D 166 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 PRO D 167 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 ARG D 168 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 GLY D 169 UNP Q07820 EXPRESSION TAG SEQADV 7NB7 SER D 170 UNP Q07820 EXPRESSION TAG SEQRES 1 A 170 MET HIS HIS HIS HIS HIS HIS LEU VAL PRO ARG GLY SER SEQRES 2 A 170 GLU ASP GLU LEU TYR ARG GLN SER LEU GLU ILE ILE SER SEQRES 3 A 170 ARG TYR LEU ARG GLU GLN ALA THR GLY ALA LYS ASP THR SEQRES 4 A 170 LYS PRO MET GLY ARG SER GLY ALA THR SER ARG LYS ALA SEQRES 5 A 170 LEU GLU THR LEU ARG ARG VAL GLY ASP GLY VAL GLN ARG SEQRES 6 A 170 ASN HIS GLU THR ALA PHE GLN GLY MET LEU ARG LYS LEU SEQRES 7 A 170 ASP ILE LYS ASN GLU ASP ASP VAL LYS SER LEU SER ARG SEQRES 8 A 170 VAL MET ILE HIS VAL PHE SER ASP GLY VAL THR ASN TRP SEQRES 9 A 170 GLY ARG ILE VAL THR LEU ILE SER PHE GLY ALA PHE VAL SEQRES 10 A 170 ALA LYS HIS LEU LYS THR ILE ASN GLN GLU SER CYS ILE SEQRES 11 A 170 GLU PRO LEU ALA GLU SER ILE THR ASP VAL LEU VAL ARG SEQRES 12 A 170 THR LYS ARG ASP TRP LEU VAL LYS GLN ARG GLY TRP ASP SEQRES 13 A 170 GLY PHE VAL GLU PHE PHE HIS VAL GLU ASP LEU GLU GLY SEQRES 14 A 170 GLY SEQRES 1 B 170 MET HIS HIS HIS HIS HIS HIS LEU VAL PRO ARG GLY SER SEQRES 2 B 170 GLU ASP GLU LEU TYR ARG GLN SER LEU GLU ILE ILE SER SEQRES 3 B 170 ARG TYR LEU ARG GLU GLN ALA THR GLY ALA LYS ASP THR SEQRES 4 B 170 LYS PRO MET GLY ARG SER GLY ALA THR SER ARG LYS ALA SEQRES 5 B 170 LEU GLU THR LEU ARG ARG VAL GLY ASP GLY VAL GLN ARG SEQRES 6 B 170 ASN HIS GLU THR ALA PHE GLN GLY MET LEU ARG LYS LEU SEQRES 7 B 170 ASP ILE LYS ASN GLU ASP ASP VAL LYS SER LEU SER ARG SEQRES 8 B 170 VAL MET ILE HIS VAL PHE SER ASP GLY VAL THR ASN TRP SEQRES 9 B 170 GLY ARG ILE VAL THR LEU ILE SER PHE GLY ALA PHE VAL SEQRES 10 B 170 ALA LYS HIS LEU LYS THR ILE ASN GLN GLU SER CYS ILE SEQRES 11 B 170 GLU PRO LEU ALA GLU SER ILE THR ASP VAL LEU VAL ARG SEQRES 12 B 170 THR LYS ARG ASP TRP LEU VAL LYS GLN ARG GLY TRP ASP SEQRES 13 B 170 GLY PHE VAL GLU PHE PHE HIS VAL GLU ASP LEU GLU GLY SEQRES 14 B 170 GLY SEQRES 1 C 170 MET HIS HIS HIS HIS HIS HIS LEU VAL PRO ARG GLY SER SEQRES 2 C 170 GLU ASP GLU LEU TYR ARG GLN SER LEU GLU ILE ILE SER SEQRES 3 C 170 ARG TYR LEU ARG GLU GLN ALA THR GLY ALA LYS ASP THR SEQRES 4 C 170 LYS PRO MET GLY ARG SER GLY ALA THR SER ARG LYS ALA SEQRES 5 C 170 LEU GLU THR LEU ARG ARG VAL GLY ASP GLY VAL GLN ARG SEQRES 6 C 170 ASN HIS GLU THR ALA PHE GLN GLY MET LEU ARG LYS LEU SEQRES 7 C 170 ASP ILE LYS ASN GLU ASP ASP VAL LYS SER LEU SER ARG SEQRES 8 C 170 VAL MET ILE HIS VAL PHE SER ASP GLY VAL THR ASN TRP SEQRES 9 C 170 GLY ARG ILE VAL THR LEU ILE SER PHE GLY ALA PHE VAL SEQRES 10 C 170 ALA LYS HIS LEU LYS THR ILE ASN GLN GLU SER CYS ILE SEQRES 11 C 170 GLU PRO LEU ALA GLU SER ILE THR ASP VAL LEU VAL ARG SEQRES 12 C 170 THR LYS ARG ASP TRP LEU VAL LYS GLN ARG GLY TRP ASP SEQRES 13 C 170 GLY PHE VAL GLU PHE PHE HIS VAL GLU ASP LEU GLU GLY SEQRES 14 C 170 GLY SEQRES 1 D 170 MET HIS HIS HIS HIS HIS HIS LEU VAL PRO ARG GLY SER SEQRES 2 D 170 GLU ASP GLU LEU TYR ARG GLN SER LEU GLU ILE ILE SER SEQRES 3 D 170 ARG TYR LEU ARG GLU GLN ALA THR GLY ALA LYS ASP THR SEQRES 4 D 170 LYS PRO MET GLY ARG SER GLY ALA THR SER ARG LYS ALA SEQRES 5 D 170 LEU GLU THR LEU ARG ARG VAL GLY ASP GLY VAL GLN ARG SEQRES 6 D 170 ASN HIS GLU THR ALA PHE GLN GLY MET LEU ARG LYS LEU SEQRES 7 D 170 ASP ILE LYS ASN GLU ASP ASP VAL LYS SER LEU SER ARG SEQRES 8 D 170 VAL MET ILE HIS VAL PHE SER ASP GLY VAL THR ASN TRP SEQRES 9 D 170 GLY ARG ILE VAL THR LEU ILE SER PHE GLY ALA PHE VAL SEQRES 10 D 170 ALA LYS HIS LEU LYS THR ILE ASN GLN GLU SER CYS ILE SEQRES 11 D 170 GLU PRO LEU ALA GLU SER ILE THR ASP VAL LEU VAL ARG SEQRES 12 D 170 THR LYS ARG ASP TRP LEU VAL LYS GLN ARG GLY TRP ASP SEQRES 13 D 170 GLY PHE VAL GLU PHE PHE HIS VAL GLU ASP LEU GLU GLY SEQRES 14 D 170 GLY HET U6N A 401 35 HET U6N B 401 35 HET U6N C 401 35 HET U6N D 401 35 HETNAM U6N (2~{R})-2-[[7-BUT-2-YNYL-5-(3-CHLORANYL-2-METHYL- HETNAM 2 U6N PHENYL)-6-ETHYL-PYRROLO[2,3-D]PYRIMIDIN-4-YL]AMINO]-3- HETNAM 3 U6N PHENYL-PROPANOIC ACID FORMUL 5 U6N 4(C28 H27 CL N4 O2) FORMUL 9 HOH *6(H2 O) HELIX 1 AA1 ASP A 172 GLY A 192 1 21 HELIX 2 AA2 SER A 202 HIS A 224 1 23 HELIX 3 AA3 HIS A 224 ASP A 236 1 13 HELIX 4 AA4 ASN A 239 PHE A 254 1 16 HELIX 5 AA5 ASN A 260 ILE A 281 1 22 HELIX 6 AA6 GLN A 283 SER A 285 5 3 HELIX 7 AA7 CYS A 286 GLN A 309 1 24 HELIX 8 AA8 ARG A 310 PHE A 319 1 10 HELIX 9 AA9 ASP B 172 GLY B 192 1 21 HELIX 10 AB1 SER B 202 HIS B 224 1 23 HELIX 11 AB2 HIS B 224 ASP B 236 1 13 HELIX 12 AB3 ASN B 239 PHE B 254 1 16 HELIX 13 AB4 ASN B 260 ILE B 281 1 22 HELIX 14 AB5 GLN B 283 SER B 285 5 3 HELIX 15 AB6 CYS B 286 GLN B 309 1 24 HELIX 16 AB7 ARG B 310 PHE B 319 1 10 HELIX 17 AB8 ASP C 172 GLY C 192 1 21 HELIX 18 AB9 SER C 202 HIS C 224 1 23 HELIX 19 AC1 HIS C 224 ASP C 236 1 13 HELIX 20 AC2 ASN C 239 SER C 255 1 17 HELIX 21 AC3 ASN C 260 ILE C 281 1 22 HELIX 22 AC4 GLN C 283 SER C 285 5 3 HELIX 23 AC5 CYS C 286 GLN C 309 1 24 HELIX 24 AC6 ARG C 310 PHE C 319 1 10 HELIX 25 AC7 ASP D 172 GLY D 192 1 21 HELIX 26 AC8 SER D 202 HIS D 224 1 23 HELIX 27 AC9 HIS D 224 ASP D 236 1 13 HELIX 28 AD1 ASN D 239 LEU D 246 1 8 HELIX 29 AD2 LEU D 246 SER D 255 1 10 HELIX 30 AD3 ASN D 260 ILE D 281 1 22 HELIX 31 AD4 GLN D 283 SER D 285 5 3 HELIX 32 AD5 CYS D 286 GLN D 309 1 24 HELIX 33 AD6 ARG D 310 PHE D 319 1 10 SITE 1 AC1 13 HIS A 224 ALA A 227 PHE A 228 MET A 231 SITE 2 AC1 13 MET A 250 ARG A 263 THR A 266 LEU A 267 SITE 3 AC1 13 PHE A 270 GLY A 271 HIS D 224 ALA D 227 SITE 4 AC1 13 U6N D 401 SITE 1 AC2 12 ALA B 227 PHE B 228 MET B 231 ARG B 263 SITE 2 AC2 12 THR B 266 LEU B 267 PHE B 270 GLY B 271 SITE 3 AC2 12 HOH B 501 HIS C 224 ALA C 227 U6N C 401 SITE 1 AC3 12 HIS B 224 ALA B 227 U6N B 401 HIS C 224 SITE 2 AC3 12 ALA C 227 PHE C 228 VAL C 253 ARG C 263 SITE 3 AC3 12 THR C 266 LEU C 267 PHE C 270 GLY C 271 SITE 1 AC4 11 HIS A 224 U6N A 401 ALA D 227 PHE D 228 SITE 2 AC4 11 MET D 231 VAL D 249 ARG D 263 THR D 266 SITE 3 AC4 11 LEU D 267 PHE D 270 GLY D 271 CRYST1 89.281 166.106 44.874 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011201 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006020 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022285 0.00000