data_7NBL
#
_entry.id 7NBL
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.392
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 7NBL pdb_00007nbl 10.2210/pdb7nbl/pdb
WWPDB D_1292113668 ? ?
BMRB 34595 ? 10.13018/BMR34595
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2021-04-07
2 'Structure model' 1 1 2024-05-15
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp_atom
2 2 'Structure model' chem_comp_bond
3 2 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_database_2.pdbx_DOI'
2 2 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr REL
_pdbx_database_status.entry_id 7NBL
_pdbx_database_status.recvd_initial_deposition_date 2021-01-27
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.status_code_cs REL
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.details
_pdbx_database_related.db_id
_pdbx_database_related.content_type
PDB 'Structure with the same modification' 7NBK
unspecified
BMRB
;Solution structure of DNA:RNA hybrid containing a 2'-deoxy-2'2'-difluorodeoxycytidine (gemcitabine) modification
;
34595 unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Cabrero, C.' 1 ?
'Martin-Pintado, N.' 2 ?
'Mazzini, S.' 3 ?
'Gargallo, R.' 4 ?
'Eritja, R.' 5 ?
'Avino, A.' 6 ?
'Gonzalez, C.' 7 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country GE
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev Chemistry
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 0947-6539
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume ?
_citation.language ?
_citation.page_first ?
_citation.page_last ?
_citation.title
'Structural Effects of Incorporation of 2 -Deoxy-2 2 -difluorodeoxycytidine (Gemcitabine) in A- and B-form Duplexes.'
_citation.year 2021
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1002/chem.202100503
_citation.pdbx_database_id_PubMed 33772916
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Cabrero, C.' 1 ?
primary 'Martin-Pintado, N.' 2 ?
primary 'Mazzini, S.' 3 ?
primary 'Gargallo, R.' 4 ?
primary 'Eritja, R.' 5 ?
primary 'Avino, A.' 6 ?
primary 'Gonzalez, C.' 7 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*TP*AP*(FFC)P*AP*CP*GP*G)-3')
;
2447.587 1 ? ? ? ?
2 polymer syn
;RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3')
;
2542.561 1 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 polydeoxyribonucleotide no yes '(DC)(DT)(DA)(U7B)(DA)(DC)(DG)(DG)' CTACACGG A ?
2 polyribonucleotide no no CCGUGUAG CCGUGUAG B ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DT n
1 3 DA n
1 4 U7B n
1 5 DA n
1 6 DC n
1 7 DG n
1 8 DG n
2 1 C n
2 2 C n
2 3 G n
2 4 U n
2 5 G n
2 6 U n
2 7 A n
2 8 G n
#
loop_
_pdbx_entity_src_syn.entity_id
_pdbx_entity_src_syn.pdbx_src_id
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_entity_src_syn.pdbx_beg_seq_num
_pdbx_entity_src_syn.pdbx_end_seq_num
_pdbx_entity_src_syn.organism_scientific
_pdbx_entity_src_syn.organism_common_name
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.details
1 1 sample 1 8 'synthetic construct' ? 32630 ?
2 1 sample 1 8 'synthetic construct' ? 32630 ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221
U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181
U7B 'DNA linking' n "2'-deoxy-2'2'-difluorodeoxycytidine"
;[(2~{R},3~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-4,4-bis(fluoranyl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphite
;
'C9 H12 F2 N3 O7 P' 343.178
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC DC A . n
A 1 2 DT 2 2 2 DT DT A . n
A 1 3 DA 3 3 3 DA DA A . n
A 1 4 U7B 4 4 4 U7B FFC A . n
A 1 5 DA 5 5 5 DA DA A . n
A 1 6 DC 6 6 6 DC DC A . n
A 1 7 DG 7 7 7 DG DG A . n
A 1 8 DG 8 8 8 DG DG A . n
B 2 1 C 1 9 9 C C B . n
B 2 2 C 2 10 10 C C B . n
B 2 3 G 3 11 11 G G B . n
B 2 4 U 4 12 12 U U B . n
B 2 5 G 5 13 13 G G B . n
B 2 6 U 6 14 14 U U B . n
B 2 7 A 7 15 15 A A B . n
B 2 8 G 8 16 16 G G B . n
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 7NBL
_exptl.crystals_number ?
_exptl.details ?
_exptl.method 'SOLUTION NMR'
_exptl.method_details ?
#
_struct.entry_id 7NBL
_struct.title
;Solution structure of DNA:RNA hybrid containing a 2'-deoxy-2'2'-difluorodeoxycytidine (gemcitabine) modification
;
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 7NBL
_struct_keywords.text 'Fluorine modification, modified DNA, gemcitabine, DNA-RNA HYBRID'
_struct_keywords.pdbx_keywords 'DNA-RNA HYBRID'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 PDB 7NBL 7NBL ? 1 ? 1
2 PDB 7NBL 7NBL ? 2 ? 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 7NBL A 1 ? 8 ? 7NBL 1 ? 8 ? 1 8
2 2 7NBL B 1 ? 8 ? 7NBL 9 ? 16 ? 9 16
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 850 ?
1 MORE -1 ?
1 'SSA (A^2)' 3230 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation ?
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DA 3 "O3'" ? ? ? 1_555 A U7B 4 P ? ? A DA 3 A U7B 4 1_555 ? ? ? ? ? ? ? 1.617 ? ?
covale2 covale one ? A U7B 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A U7B 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.590 ? ?
hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B A 7 N1 ? ? A DT 2 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B A 7 N6 ? ? A DT 2 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B U 6 N3 ? ? A DA 3 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B U 6 O4 ? ? A DA 3 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A U7B 4 N3 ? ? ? 1_555 B G 5 N1 ? ? A U7B 4 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A U7B 4 N4 ? ? ? 1_555 B G 5 O6 ? ? A U7B 4 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A U7B 4 O2 ? ? ? 1_555 B G 5 N2 ? ? A U7B 4 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B U 4 N3 ? ? A DA 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B U 4 O4 ? ? A DA 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B G 3 N1 ? ? A DC 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B G 3 O6 ? ? A DC 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B G 3 N2 ? ? A DC 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B C 2 N3 ? ? A DG 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B C 2 O2 ? ? A DG 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B C 2 N4 ? ? A DG 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B C 1 N3 ? ? A DG 8 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B C 1 O2 ? ? A DG 8 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B C 1 N4 ? ? A DG 8 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.59
2 2 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.57
3 3 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.54
4 4 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.55
5 5 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.55
6 6 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.60
7 7 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.54
8 10 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.58
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.20 108.30 2.90 0.30 N
2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 113.30 118.00 -4.70 0.70 N
3 1 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 124.95 120.20 4.75 0.70 N
4 1 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.20 122.90 -3.70 0.60 N
5 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.23 108.30 1.93 0.30 N
6 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.20 118.60 -4.40 0.60 N
7 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.91 108.30 3.61 0.30 N
8 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.54 108.30 2.24 0.30 N
9 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.55 108.30 2.25 0.30 N
10 1 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 113.16 108.50 4.66 0.70 N
11 1 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 113.53 108.50 5.03 0.70 N
12 1 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 106.52 101.50 5.02 0.80 N
13 1 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 115.84 108.50 7.34 0.70 N
14 1 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.34 117.00 -3.66 0.50 N
15 1 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.89 118.60 -3.71 0.60 N
16 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.00 108.30 2.70 0.30 N
17 2 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.56 118.90 3.66 0.60 N
18 2 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 111.72 118.00 -6.28 0.70 N
19 2 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 126.39 120.20 6.19 0.70 N
20 2 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 118.78 122.90 -4.12 0.60 N
21 2 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.76 118.60 -3.84 0.60 N
22 2 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.70 108.30 3.40 0.30 N
23 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.23 108.30 2.93 0.30 N
24 2 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.68 108.30 2.38 0.30 N
25 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 113.54 108.30 5.24 0.30 N
26 2 "O5'" B C 9 ? ? "C5'" B C 9 ? ? "C4'" B C 9 ? ? 102.72 109.40 -6.68 0.80 N
27 2 N3 B C 9 ? ? C2 B C 9 ? ? O2 B C 9 ? ? 117.35 121.90 -4.55 0.70 N
28 2 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.47 108.50 4.97 0.70 N
29 2 N3 B C 10 ? ? C2 B C 10 ? ? O2 B C 10 ? ? 117.64 121.90 -4.26 0.70 N
30 2 "O4'" B G 11 ? ? "C1'" B G 11 ? ? N9 B G 11 ? ? 113.01 108.50 4.51 0.70 N
31 2 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 113.72 108.50 5.22 0.70 N
32 2 C5 B U 12 ? ? C6 B U 12 ? ? N1 B U 12 ? ? 119.62 122.70 -3.08 0.50 N
33 2 C5 B U 14 ? ? C6 B U 14 ? ? N1 B U 14 ? ? 119.55 122.70 -3.15 0.50 N
34 2 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 107.50 101.50 6.00 0.80 N
35 2 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 115.32 108.50 6.82 0.70 N
36 2 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.34 117.00 -3.66 0.50 N
37 2 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.55 118.60 -4.05 0.60 N
38 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.88 108.30 2.58 0.30 N
39 3 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 124.65 120.20 4.45 0.70 N
40 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.74 108.30 2.44 0.30 N
41 3 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.24 122.90 -3.66 0.60 N
42 3 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.31 118.60 -4.29 0.60 N
43 3 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.40 108.30 2.10 0.30 N
44 3 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.69 121.90 -4.21 0.70 N
45 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.41 108.30 3.11 0.30 N
46 3 "C5'" B C 9 ? ? "C4'" B C 9 ? ? "O4'" B C 9 ? ? 115.20 109.80 5.40 0.90 N
47 3 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.42 108.50 4.92 0.70 N
48 3 "O4'" B G 11 ? ? "C1'" B G 11 ? ? N9 B G 11 ? ? 113.64 108.50 5.14 0.70 N
49 3 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 112.83 108.50 4.33 0.70 N
50 3 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 106.93 101.50 5.43 0.80 N
51 3 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 115.47 108.50 6.97 0.70 N
52 3 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.14 117.00 -3.86 0.50 N
53 3 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.42 118.60 -4.18 0.60 N
54 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.11 108.30 1.81 0.30 N
55 4 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 113.16 118.00 -4.84 0.70 N
56 4 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 125.00 120.20 4.80 0.70 N
57 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.21 108.30 1.91 0.30 N
58 4 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.70 118.60 -3.90 0.60 N
59 4 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.52 108.30 3.22 0.30 N
60 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.53 108.30 2.23 0.30 N
61 4 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.36 108.30 2.06 0.30 N
62 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.10 108.30 3.80 0.30 N
63 4 "O4'" B C 9 ? ? "C1'" B C 9 ? ? N1 B C 9 ? ? 113.01 108.50 4.51 0.70 N
64 4 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.23 108.50 4.73 0.70 N
65 4 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 113.19 108.50 4.69 0.70 N
66 4 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 113.25 108.50 4.75 0.70 N
67 4 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 106.88 101.50 5.38 0.80 N
68 4 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 114.92 108.50 6.42 0.70 N
69 4 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.27 117.00 -3.73 0.50 N
70 4 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.50 118.60 -4.10 0.60 N
71 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.51 108.30 2.21 0.30 N
72 5 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 113.00 118.00 -5.00 0.70 N
73 5 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 125.25 120.20 5.05 0.70 N
74 5 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.18 122.90 -3.72 0.60 N
75 5 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 113.96 117.00 -3.04 0.50 N
76 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.04 108.30 2.74 0.30 N
77 5 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.96 108.30 2.66 0.30 N
78 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.84 108.30 3.54 0.30 N
79 5 "O4'" B C 9 ? ? "C1'" B C 9 ? ? N1 B C 9 ? ? 113.29 108.50 4.79 0.70 N
80 5 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 112.89 108.50 4.39 0.70 N
81 5 "O5'" B U 12 ? ? P B U 12 ? ? OP2 B U 12 ? ? 99.82 105.70 -5.88 0.90 N
82 5 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.72 108.50 6.22 0.70 N
83 5 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 106.65 101.50 5.15 0.80 N
84 5 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 115.78 108.50 7.28 0.70 N
85 5 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.13 117.00 -3.87 0.50 N
86 5 C6 B A 15 ? ? C5 B A 15 ? ? N7 B A 15 ? ? 136.73 132.30 4.43 0.70 N
87 5 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 113.79 118.60 -4.81 0.60 N
88 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.60 108.30 2.30 0.30 N
89 6 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 113.50 118.00 -4.50 0.70 N
90 6 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 125.08 120.20 4.88 0.70 N
91 6 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.55 108.30 2.25 0.30 N
92 6 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 118.72 122.90 -4.18 0.60 N
93 6 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.12 108.30 1.82 0.30 N
94 6 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.76 118.60 -3.84 0.60 N
95 6 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.47 108.30 3.17 0.30 N
96 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.20 108.30 1.90 0.30 N
97 6 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.10 108.30 2.80 0.30 N
98 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.25 108.30 2.95 0.30 N
99 6 "O4'" B C 9 ? ? "C1'" B C 9 ? ? N1 B C 9 ? ? 112.81 108.50 4.31 0.70 N
100 6 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 112.94 108.50 4.44 0.70 N
101 6 "O4'" B G 11 ? ? "C1'" B G 11 ? ? N9 B G 11 ? ? 112.95 108.50 4.45 0.70 N
102 6 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 112.77 108.50 4.27 0.70 N
103 6 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.48 108.50 5.98 0.70 N
104 6 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 107.03 101.50 5.53 0.80 N
105 6 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 115.40 108.50 6.90 0.70 N
106 6 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.17 117.00 -3.83 0.50 N
107 6 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.42 118.60 -4.18 0.60 N
108 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.32 108.30 2.02 0.30 N
109 7 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 124.68 120.20 4.48 0.70 N
110 7 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 118.50 122.90 -4.40 0.60 N
111 7 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.32 108.30 2.02 0.30 N
112 7 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.87 108.30 2.57 0.30 N
113 7 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.13 108.30 1.83 0.30 N
114 7 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.20 108.30 2.90 0.30 N
115 7 "O4'" B C 9 ? ? "C1'" B C 9 ? ? N1 B C 9 ? ? 113.05 108.50 4.55 0.70 N
116 7 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 112.94 108.50 4.44 0.70 N
117 7 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 114.45 108.50 5.95 0.70 N
118 7 "O4'" B G 13 ? ? "C1'" B G 13 ? ? N9 B G 13 ? ? 112.75 108.50 4.25 0.70 N
119 7 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.09 108.50 5.59 0.70 N
120 7 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 106.47 101.50 4.97 0.80 N
121 7 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 114.93 108.50 6.43 0.70 N
122 7 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.34 117.00 -3.66 0.50 N
123 7 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.38 118.60 -4.22 0.60 N
124 8 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 113.47 118.00 -4.53 0.70 N
125 8 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 125.03 120.20 4.83 0.70 N
126 8 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.47 108.30 2.17 0.30 N
127 8 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.02 122.90 -3.88 0.60 N
128 8 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.70 118.60 -3.90 0.60 N
129 8 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.85 108.30 2.55 0.30 N
130 8 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.14 108.30 2.84 0.30 N
131 8 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.05 108.30 2.75 0.30 N
132 8 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.15 108.50 5.65 0.70 N
133 8 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 114.09 108.50 5.59 0.70 N
134 8 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.71 117.00 -3.29 0.50 N
135 8 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.62 118.60 -3.98 0.60 N
136 8 "C5'" B G 16 ? ? "C4'" B G 16 ? ? "O4'" B G 16 ? ? 115.51 109.80 5.71 0.90 N
137 8 "O4'" B G 16 ? ? "C1'" B G 16 ? ? N9 B G 16 ? ? 113.02 108.50 4.52 0.70 N
138 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.11 108.30 2.81 0.30 N
139 9 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 113.41 118.00 -4.59 0.70 N
140 9 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 125.23 120.20 5.03 0.70 N
141 9 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.64 108.30 2.34 0.30 N
142 9 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.11 108.30 2.81 0.30 N
143 9 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 112.20 108.30 3.90 0.30 N
144 9 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.95 108.30 3.65 0.30 N
145 9 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.32 108.50 4.82 0.70 N
146 9 "O4'" B G 13 ? ? "C1'" B G 13 ? ? N9 B G 13 ? ? 113.10 108.50 4.60 0.70 N
147 9 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 115.42 108.50 6.92 0.70 N
148 9 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 114.25 108.50 5.75 0.70 N
149 9 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.26 117.00 -3.74 0.50 N
150 9 "O4'" B G 16 ? ? "C1'" B G 16 ? ? N9 B G 16 ? ? 114.56 108.50 6.06 0.70 N
151 10 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 112.44 118.00 -5.56 0.70 N
152 10 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 125.63 120.20 5.43 0.70 N
153 10 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 118.98 122.90 -3.92 0.60 N
154 10 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.43 108.30 2.13 0.30 N
155 10 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.69 118.60 -3.91 0.60 N
156 10 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.71 108.30 2.41 0.30 N
157 10 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.47 108.30 2.17 0.30 N
158 10 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.41 108.30 2.11 0.30 N
159 10 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.45 108.30 3.15 0.30 N
160 10 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.35 108.50 5.85 0.70 N
161 10 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 106.67 101.50 5.17 0.80 N
162 10 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 114.48 108.50 5.98 0.70 N
163 10 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.47 117.00 -3.53 0.50 N
164 10 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.50 118.60 -4.10 0.60 N
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DC A 1 ? ? 0.077 'SIDE CHAIN'
2 1 DG A 7 ? ? 0.056 'SIDE CHAIN'
3 1 C B 9 ? ? 0.061 'SIDE CHAIN'
4 1 A B 15 ? ? 0.070 'SIDE CHAIN'
5 2 C B 10 ? ? 0.068 'SIDE CHAIN'
6 2 A B 15 ? ? 0.074 'SIDE CHAIN'
7 3 DC A 1 ? ? 0.064 'SIDE CHAIN'
8 3 C B 10 ? ? 0.064 'SIDE CHAIN'
9 3 G B 11 ? ? 0.050 'SIDE CHAIN'
10 3 G B 13 ? ? 0.080 'SIDE CHAIN'
11 3 A B 15 ? ? 0.065 'SIDE CHAIN'
12 4 DC A 1 ? ? 0.070 'SIDE CHAIN'
13 4 A B 15 ? ? 0.081 'SIDE CHAIN'
14 5 DC A 1 ? ? 0.090 'SIDE CHAIN'
15 5 C B 10 ? ? 0.070 'SIDE CHAIN'
16 5 G B 11 ? ? 0.055 'SIDE CHAIN'
17 5 A B 15 ? ? 0.075 'SIDE CHAIN'
18 6 G B 11 ? ? 0.057 'SIDE CHAIN'
19 6 A B 15 ? ? 0.087 'SIDE CHAIN'
20 6 G B 16 ? ? 0.065 'SIDE CHAIN'
21 7 DC A 1 ? ? 0.066 'SIDE CHAIN'
22 7 C B 9 ? ? 0.063 'SIDE CHAIN'
23 7 G B 11 ? ? 0.064 'SIDE CHAIN'
24 7 A B 15 ? ? 0.074 'SIDE CHAIN'
25 8 DC A 1 ? ? 0.064 'SIDE CHAIN'
26 8 C B 9 ? ? 0.068 'SIDE CHAIN'
27 8 C B 10 ? ? 0.069 'SIDE CHAIN'
28 8 G B 16 ? ? 0.077 'SIDE CHAIN'
29 9 DC A 1 ? ? 0.094 'SIDE CHAIN'
30 9 C B 9 ? ? 0.066 'SIDE CHAIN'
31 9 G B 11 ? ? 0.075 'SIDE CHAIN'
32 9 G B 16 ? ? 0.070 'SIDE CHAIN'
33 10 C B 9 ? ? 0.061 'SIDE CHAIN'
34 10 C B 10 ? ? 0.067 'SIDE CHAIN'
35 10 G B 11 ? ? 0.069 'SIDE CHAIN'
36 10 A B 15 ? ? 0.073 'SIDE CHAIN'
37 10 G B 16 ? ? 0.061 'SIDE CHAIN'
#
_pdbx_entry_details.entry_id 7NBL
_pdbx_entry_details.has_ligand_of_interest Y
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
#
_pdbx_nmr_ensemble.entry_id 7NBL
_pdbx_nmr_ensemble.conformers_calculated_total_number 10
_pdbx_nmr_ensemble.conformers_submitted_total_number 10
_pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted'
_pdbx_nmr_ensemble.representative_conformer ?
_pdbx_nmr_ensemble.average_constraints_per_residue ?
_pdbx_nmr_ensemble.average_constraint_violations_per_residue ?
_pdbx_nmr_ensemble.maximum_distance_constraint_violation ?
_pdbx_nmr_ensemble.average_distance_constraint_violation ?
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ?
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ?
_pdbx_nmr_ensemble.distance_constraint_violation_method ?
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ?
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ?
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ?
#
_pdbx_nmr_representative.entry_id 7NBL
_pdbx_nmr_representative.conformer_id 1
_pdbx_nmr_representative.selection_criteria 'fewest violations'
#
loop_
_pdbx_nmr_sample_details.solution_id
_pdbx_nmr_sample_details.contents
_pdbx_nmr_sample_details.solvent_system
_pdbx_nmr_sample_details.label
_pdbx_nmr_sample_details.type
_pdbx_nmr_sample_details.details
1
;0.5 M DNA (5'-D(*CP*TP*AP*(FFC)P*AP*CP*GP*G)-3'), 0.5 M RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3'), 25 mM sodium phosphate, 100 mM sodium chloride, 0.5 % v/v DSS, 90% H2O/10% D2O
;
'90% H2O/10% D2O' DiFs_Hybrid solution ?
2
;0.5 M DNA (5'-D(*CP*TP*AP*(FFC)P*AP*CP*GP*G)-3'), 0.5 M RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3'), 25 mM sodium phosphate, 100 mM sodium chloride, 0.5 % v/v DSS, 100% D2O
;
'100% D2O' DiFs_Hybrid_D2O solution ?
#
loop_
_pdbx_nmr_exptl_sample.solution_id
_pdbx_nmr_exptl_sample.component
_pdbx_nmr_exptl_sample.concentration
_pdbx_nmr_exptl_sample.concentration_range
_pdbx_nmr_exptl_sample.concentration_units
_pdbx_nmr_exptl_sample.isotopic_labeling
1
;DNA (5'-D(*CP*TP*AP*(FFC)P*AP*CP*GP*G)-3')
;
0.5 ? M 'natural abundance'
1
;RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3')
;
0.5 ? M 'natural abundance'
1 'sodium phosphate' 25 ? mM 'natural abundance'
1 'sodium chloride' 100 ? mM 'natural abundance'
1 DSS 0.5 ? '% v/v' 'natural abundance'
2
;DNA (5'-D(*CP*TP*AP*(FFC)P*AP*CP*GP*G)-3')
;
0.5 ? M 'natural abundance'
2
;RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3')
;
0.5 ? M 'natural abundance'
2 'sodium phosphate' 25 ? mM 'natural abundance'
2 'sodium chloride' 100 ? mM 'natural abundance'
2 DSS 0.5 ? '% v/v' 'natural abundance'
#
loop_
_pdbx_nmr_exptl_sample_conditions.conditions_id
_pdbx_nmr_exptl_sample_conditions.temperature
_pdbx_nmr_exptl_sample_conditions.pressure_units
_pdbx_nmr_exptl_sample_conditions.pressure
_pdbx_nmr_exptl_sample_conditions.pH
_pdbx_nmr_exptl_sample_conditions.ionic_strength
_pdbx_nmr_exptl_sample_conditions.details
_pdbx_nmr_exptl_sample_conditions.ionic_strength_err
_pdbx_nmr_exptl_sample_conditions.ionic_strength_units
_pdbx_nmr_exptl_sample_conditions.label
_pdbx_nmr_exptl_sample_conditions.pH_err
_pdbx_nmr_exptl_sample_conditions.pH_units
_pdbx_nmr_exptl_sample_conditions.pressure_err
_pdbx_nmr_exptl_sample_conditions.temperature_err
_pdbx_nmr_exptl_sample_conditions.temperature_units
1 278 atm 1 7 125 ? ? mM T5 ? pH ? ? K
2 298 atm 1 7 125 ? ? mM T25 ? pH ? ? K
#
loop_
_pdbx_nmr_exptl.experiment_id
_pdbx_nmr_exptl.conditions_id
_pdbx_nmr_exptl.solution_id
_pdbx_nmr_exptl.type
_pdbx_nmr_exptl.spectrometer_id
_pdbx_nmr_exptl.sample_state
1 1 1 '2D 1H-1H NOESY' 1 isotropic
2 1 1 '2D 1H-1H TOCSY' 1 isotropic
3 2 2 '2D 1H-1H COSY' 1 isotropic
4 2 2 '2D 1H-1H NOESY' 1 isotropic
5 2 2 '2D 1H-1H TOCSY' 1 isotropic
#
_pdbx_nmr_refine.entry_id 7NBL
_pdbx_nmr_refine.method 'molecular dynamics'
_pdbx_nmr_refine.details ?
_pdbx_nmr_refine.software_ordinal 5
#
loop_
_pdbx_nmr_software.ordinal
_pdbx_nmr_software.classification
_pdbx_nmr_software.name
_pdbx_nmr_software.version
_pdbx_nmr_software.authors
1 collection TopSpin ? 'Bruker Biospin'
2 processing TopSpin ? 'Bruker Biospin'
3 'chemical shift assignment' NMRFAM-SPARKY ? 'Goddard & Kneller'
4 'structure calculation' Amber 18 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman'
5 refinement Amber 18 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman'
6 'data analysis' MOLMOL ? 'Koradi, Billeter and Wuthrich'
7 'data analysis' 3DNA ? 'Lu & Olson'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
A OP3 O N N 1
A P P N N 2
A OP1 O N N 3
A OP2 O N N 4
A "O5'" O N N 5
A "C5'" C N N 6
A "C4'" C N R 7
A "O4'" O N N 8
A "C3'" C N S 9
A "O3'" O N N 10
A "C2'" C N R 11
A "O2'" O N N 12
A "C1'" C N R 13
A N9 N Y N 14
A C8 C Y N 15
A N7 N Y N 16
A C5 C Y N 17
A C6 C Y N 18
A N6 N N N 19
A N1 N Y N 20
A C2 C Y N 21
A N3 N Y N 22
A C4 C Y N 23
A HOP3 H N N 24
A HOP2 H N N 25
A "H5'" H N N 26
A "H5''" H N N 27
A "H4'" H N N 28
A "H3'" H N N 29
A "HO3'" H N N 30
A "H2'" H N N 31
A "HO2'" H N N 32
A "H1'" H N N 33
A H8 H N N 34
A H61 H N N 35
A H62 H N N 36
A H2 H N N 37
C OP3 O N N 38
C P P N N 39
C OP1 O N N 40
C OP2 O N N 41
C "O5'" O N N 42
C "C5'" C N N 43
C "C4'" C N R 44
C "O4'" O N N 45
C "C3'" C N S 46
C "O3'" O N N 47
C "C2'" C N R 48
C "O2'" O N N 49
C "C1'" C N R 50
C N1 N N N 51
C C2 C N N 52
C O2 O N N 53
C N3 N N N 54
C C4 C N N 55
C N4 N N N 56
C C5 C N N 57
C C6 C N N 58
C HOP3 H N N 59
C HOP2 H N N 60
C "H5'" H N N 61
C "H5''" H N N 62
C "H4'" H N N 63
C "H3'" H N N 64
C "HO3'" H N N 65
C "H2'" H N N 66
C "HO2'" H N N 67
C "H1'" H N N 68
C H41 H N N 69
C H42 H N N 70
C H5 H N N 71
C H6 H N N 72
DA OP3 O N N 73
DA P P N N 74
DA OP1 O N N 75
DA OP2 O N N 76
DA "O5'" O N N 77
DA "C5'" C N N 78
DA "C4'" C N R 79
DA "O4'" O N N 80
DA "C3'" C N S 81
DA "O3'" O N N 82
DA "C2'" C N N 83
DA "C1'" C N R 84
DA N9 N Y N 85
DA C8 C Y N 86
DA N7 N Y N 87
DA C5 C Y N 88
DA C6 C Y N 89
DA N6 N N N 90
DA N1 N Y N 91
DA C2 C Y N 92
DA N3 N Y N 93
DA C4 C Y N 94
DA HOP3 H N N 95
DA HOP2 H N N 96
DA "H5'" H N N 97
DA "H5''" H N N 98
DA "H4'" H N N 99
DA "H3'" H N N 100
DA "HO3'" H N N 101
DA "H2'" H N N 102
DA "H2''" H N N 103
DA "H1'" H N N 104
DA H8 H N N 105
DA H61 H N N 106
DA H62 H N N 107
DA H2 H N N 108
DC OP3 O N N 109
DC P P N N 110
DC OP1 O N N 111
DC OP2 O N N 112
DC "O5'" O N N 113
DC "C5'" C N N 114
DC "C4'" C N R 115
DC "O4'" O N N 116
DC "C3'" C N S 117
DC "O3'" O N N 118
DC "C2'" C N N 119
DC "C1'" C N R 120
DC N1 N N N 121
DC C2 C N N 122
DC O2 O N N 123
DC N3 N N N 124
DC C4 C N N 125
DC N4 N N N 126
DC C5 C N N 127
DC C6 C N N 128
DC HOP3 H N N 129
DC HOP2 H N N 130
DC "H5'" H N N 131
DC "H5''" H N N 132
DC "H4'" H N N 133
DC "H3'" H N N 134
DC "HO3'" H N N 135
DC "H2'" H N N 136
DC "H2''" H N N 137
DC "H1'" H N N 138
DC H41 H N N 139
DC H42 H N N 140
DC H5 H N N 141
DC H6 H N N 142
DG OP3 O N N 143
DG P P N N 144
DG OP1 O N N 145
DG OP2 O N N 146
DG "O5'" O N N 147
DG "C5'" C N N 148
DG "C4'" C N R 149
DG "O4'" O N N 150
DG "C3'" C N S 151
DG "O3'" O N N 152
DG "C2'" C N N 153
DG "C1'" C N R 154
DG N9 N Y N 155
DG C8 C Y N 156
DG N7 N Y N 157
DG C5 C Y N 158
DG C6 C N N 159
DG O6 O N N 160
DG N1 N N N 161
DG C2 C N N 162
DG N2 N N N 163
DG N3 N N N 164
DG C4 C Y N 165
DG HOP3 H N N 166
DG HOP2 H N N 167
DG "H5'" H N N 168
DG "H5''" H N N 169
DG "H4'" H N N 170
DG "H3'" H N N 171
DG "HO3'" H N N 172
DG "H2'" H N N 173
DG "H2''" H N N 174
DG "H1'" H N N 175
DG H8 H N N 176
DG H1 H N N 177
DG H21 H N N 178
DG H22 H N N 179
DT OP3 O N N 180
DT P P N N 181
DT OP1 O N N 182
DT OP2 O N N 183
DT "O5'" O N N 184
DT "C5'" C N N 185
DT "C4'" C N R 186
DT "O4'" O N N 187
DT "C3'" C N S 188
DT "O3'" O N N 189
DT "C2'" C N N 190
DT "C1'" C N R 191
DT N1 N N N 192
DT C2 C N N 193
DT O2 O N N 194
DT N3 N N N 195
DT C4 C N N 196
DT O4 O N N 197
DT C5 C N N 198
DT C7 C N N 199
DT C6 C N N 200
DT HOP3 H N N 201
DT HOP2 H N N 202
DT "H5'" H N N 203
DT "H5''" H N N 204
DT "H4'" H N N 205
DT "H3'" H N N 206
DT "HO3'" H N N 207
DT "H2'" H N N 208
DT "H2''" H N N 209
DT "H1'" H N N 210
DT H3 H N N 211
DT H71 H N N 212
DT H72 H N N 213
DT H73 H N N 214
DT H6 H N N 215
G OP3 O N N 216
G P P N N 217
G OP1 O N N 218
G OP2 O N N 219
G "O5'" O N N 220
G "C5'" C N N 221
G "C4'" C N R 222
G "O4'" O N N 223
G "C3'" C N S 224
G "O3'" O N N 225
G "C2'" C N R 226
G "O2'" O N N 227
G "C1'" C N R 228
G N9 N Y N 229
G C8 C Y N 230
G N7 N Y N 231
G C5 C Y N 232
G C6 C N N 233
G O6 O N N 234
G N1 N N N 235
G C2 C N N 236
G N2 N N N 237
G N3 N N N 238
G C4 C Y N 239
G HOP3 H N N 240
G HOP2 H N N 241
G "H5'" H N N 242
G "H5''" H N N 243
G "H4'" H N N 244
G "H3'" H N N 245
G "HO3'" H N N 246
G "H2'" H N N 247
G "HO2'" H N N 248
G "H1'" H N N 249
G H8 H N N 250
G H1 H N N 251
G H21 H N N 252
G H22 H N N 253
U OP3 O N N 254
U P P N N 255
U OP1 O N N 256
U OP2 O N N 257
U "O5'" O N N 258
U "C5'" C N N 259
U "C4'" C N R 260
U "O4'" O N N 261
U "C3'" C N S 262
U "O3'" O N N 263
U "C2'" C N R 264
U "O2'" O N N 265
U "C1'" C N R 266
U N1 N N N 267
U C2 C N N 268
U O2 O N N 269
U N3 N N N 270
U C4 C N N 271
U O4 O N N 272
U C5 C N N 273
U C6 C N N 274
U HOP3 H N N 275
U HOP2 H N N 276
U "H5'" H N N 277
U "H5''" H N N 278
U "H4'" H N N 279
U "H3'" H N N 280
U "HO3'" H N N 281
U "H2'" H N N 282
U "HO2'" H N N 283
U "H1'" H N N 284
U H3 H N N 285
U H5 H N N 286
U H6 H N N 287
U7B P P N N 288
U7B "C5'" C N N 289
U7B "O5'" O N N 290
U7B "C4'" C N R 291
U7B "O4'" O N N 292
U7B "C3'" C N R 293
U7B "O3'" O N N 294
U7B "C2'" C N N 295
U7B "C1'" C N R 296
U7B N1 N N N 297
U7B C2 C N N 298
U7B O2 O N N 299
U7B N3 N N N 300
U7B C4 C N N 301
U7B N4 N N N 302
U7B C5 C N N 303
U7B C6 C N N 304
U7B OP1 O N N 305
U7B OP2 O N N 306
U7B F1 F N N 307
U7B F2 F N N 308
U7B "H5''" H N N 309
U7B "H5'" H N N 310
U7B "H4'" H N N 311
U7B "H3'" H N N 312
U7B H1 H N N 313
U7B "H1'" H N N 314
U7B H42 H N N 315
U7B H41 H N N 316
U7B H5 H N N 317
U7B H6 H N N 318
U7B H3 H N N 319
U7B OP3 O N N 320
U7B H2 H N N 321
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A OP3 P sing N N 1
A OP3 HOP3 sing N N 2
A P OP1 doub N N 3
A P OP2 sing N N 4
A P "O5'" sing N N 5
A OP2 HOP2 sing N N 6
A "O5'" "C5'" sing N N 7
A "C5'" "C4'" sing N N 8
A "C5'" "H5'" sing N N 9
A "C5'" "H5''" sing N N 10
A "C4'" "O4'" sing N N 11
A "C4'" "C3'" sing N N 12
A "C4'" "H4'" sing N N 13
A "O4'" "C1'" sing N N 14
A "C3'" "O3'" sing N N 15
A "C3'" "C2'" sing N N 16
A "C3'" "H3'" sing N N 17
A "O3'" "HO3'" sing N N 18
A "C2'" "O2'" sing N N 19
A "C2'" "C1'" sing N N 20
A "C2'" "H2'" sing N N 21
A "O2'" "HO2'" sing N N 22
A "C1'" N9 sing N N 23
A "C1'" "H1'" sing N N 24
A N9 C8 sing Y N 25
A N9 C4 sing Y N 26
A C8 N7 doub Y N 27
A C8 H8 sing N N 28
A N7 C5 sing Y N 29
A C5 C6 sing Y N 30
A C5 C4 doub Y N 31
A C6 N6 sing N N 32
A C6 N1 doub Y N 33
A N6 H61 sing N N 34
A N6 H62 sing N N 35
A N1 C2 sing Y N 36
A C2 N3 doub Y N 37
A C2 H2 sing N N 38
A N3 C4 sing Y N 39
C OP3 P sing N N 40
C OP3 HOP3 sing N N 41
C P OP1 doub N N 42
C P OP2 sing N N 43
C P "O5'" sing N N 44
C OP2 HOP2 sing N N 45
C "O5'" "C5'" sing N N 46
C "C5'" "C4'" sing N N 47
C "C5'" "H5'" sing N N 48
C "C5'" "H5''" sing N N 49
C "C4'" "O4'" sing N N 50
C "C4'" "C3'" sing N N 51
C "C4'" "H4'" sing N N 52
C "O4'" "C1'" sing N N 53
C "C3'" "O3'" sing N N 54
C "C3'" "C2'" sing N N 55
C "C3'" "H3'" sing N N 56
C "O3'" "HO3'" sing N N 57
C "C2'" "O2'" sing N N 58
C "C2'" "C1'" sing N N 59
C "C2'" "H2'" sing N N 60
C "O2'" "HO2'" sing N N 61
C "C1'" N1 sing N N 62
C "C1'" "H1'" sing N N 63
C N1 C2 sing N N 64
C N1 C6 sing N N 65
C C2 O2 doub N N 66
C C2 N3 sing N N 67
C N3 C4 doub N N 68
C C4 N4 sing N N 69
C C4 C5 sing N N 70
C N4 H41 sing N N 71
C N4 H42 sing N N 72
C C5 C6 doub N N 73
C C5 H5 sing N N 74
C C6 H6 sing N N 75
DA OP3 P sing N N 76
DA OP3 HOP3 sing N N 77
DA P OP1 doub N N 78
DA P OP2 sing N N 79
DA P "O5'" sing N N 80
DA OP2 HOP2 sing N N 81
DA "O5'" "C5'" sing N N 82
DA "C5'" "C4'" sing N N 83
DA "C5'" "H5'" sing N N 84
DA "C5'" "H5''" sing N N 85
DA "C4'" "O4'" sing N N 86
DA "C4'" "C3'" sing N N 87
DA "C4'" "H4'" sing N N 88
DA "O4'" "C1'" sing N N 89
DA "C3'" "O3'" sing N N 90
DA "C3'" "C2'" sing N N 91
DA "C3'" "H3'" sing N N 92
DA "O3'" "HO3'" sing N N 93
DA "C2'" "C1'" sing N N 94
DA "C2'" "H2'" sing N N 95
DA "C2'" "H2''" sing N N 96
DA "C1'" N9 sing N N 97
DA "C1'" "H1'" sing N N 98
DA N9 C8 sing Y N 99
DA N9 C4 sing Y N 100
DA C8 N7 doub Y N 101
DA C8 H8 sing N N 102
DA N7 C5 sing Y N 103
DA C5 C6 sing Y N 104
DA C5 C4 doub Y N 105
DA C6 N6 sing N N 106
DA C6 N1 doub Y N 107
DA N6 H61 sing N N 108
DA N6 H62 sing N N 109
DA N1 C2 sing Y N 110
DA C2 N3 doub Y N 111
DA C2 H2 sing N N 112
DA N3 C4 sing Y N 113
DC OP3 P sing N N 114
DC OP3 HOP3 sing N N 115
DC P OP1 doub N N 116
DC P OP2 sing N N 117
DC P "O5'" sing N N 118
DC OP2 HOP2 sing N N 119
DC "O5'" "C5'" sing N N 120
DC "C5'" "C4'" sing N N 121
DC "C5'" "H5'" sing N N 122
DC "C5'" "H5''" sing N N 123
DC "C4'" "O4'" sing N N 124
DC "C4'" "C3'" sing N N 125
DC "C4'" "H4'" sing N N 126
DC "O4'" "C1'" sing N N 127
DC "C3'" "O3'" sing N N 128
DC "C3'" "C2'" sing N N 129
DC "C3'" "H3'" sing N N 130
DC "O3'" "HO3'" sing N N 131
DC "C2'" "C1'" sing N N 132
DC "C2'" "H2'" sing N N 133
DC "C2'" "H2''" sing N N 134
DC "C1'" N1 sing N N 135
DC "C1'" "H1'" sing N N 136
DC N1 C2 sing N N 137
DC N1 C6 sing N N 138
DC C2 O2 doub N N 139
DC C2 N3 sing N N 140
DC N3 C4 doub N N 141
DC C4 N4 sing N N 142
DC C4 C5 sing N N 143
DC N4 H41 sing N N 144
DC N4 H42 sing N N 145
DC C5 C6 doub N N 146
DC C5 H5 sing N N 147
DC C6 H6 sing N N 148
DG OP3 P sing N N 149
DG OP3 HOP3 sing N N 150
DG P OP1 doub N N 151
DG P OP2 sing N N 152
DG P "O5'" sing N N 153
DG OP2 HOP2 sing N N 154
DG "O5'" "C5'" sing N N 155
DG "C5'" "C4'" sing N N 156
DG "C5'" "H5'" sing N N 157
DG "C5'" "H5''" sing N N 158
DG "C4'" "O4'" sing N N 159
DG "C4'" "C3'" sing N N 160
DG "C4'" "H4'" sing N N 161
DG "O4'" "C1'" sing N N 162
DG "C3'" "O3'" sing N N 163
DG "C3'" "C2'" sing N N 164
DG "C3'" "H3'" sing N N 165
DG "O3'" "HO3'" sing N N 166
DG "C2'" "C1'" sing N N 167
DG "C2'" "H2'" sing N N 168
DG "C2'" "H2''" sing N N 169
DG "C1'" N9 sing N N 170
DG "C1'" "H1'" sing N N 171
DG N9 C8 sing Y N 172
DG N9 C4 sing Y N 173
DG C8 N7 doub Y N 174
DG C8 H8 sing N N 175
DG N7 C5 sing Y N 176
DG C5 C6 sing N N 177
DG C5 C4 doub Y N 178
DG C6 O6 doub N N 179
DG C6 N1 sing N N 180
DG N1 C2 sing N N 181
DG N1 H1 sing N N 182
DG C2 N2 sing N N 183
DG C2 N3 doub N N 184
DG N2 H21 sing N N 185
DG N2 H22 sing N N 186
DG N3 C4 sing N N 187
DT OP3 P sing N N 188
DT OP3 HOP3 sing N N 189
DT P OP1 doub N N 190
DT P OP2 sing N N 191
DT P "O5'" sing N N 192
DT OP2 HOP2 sing N N 193
DT "O5'" "C5'" sing N N 194
DT "C5'" "C4'" sing N N 195
DT "C5'" "H5'" sing N N 196
DT "C5'" "H5''" sing N N 197
DT "C4'" "O4'" sing N N 198
DT "C4'" "C3'" sing N N 199
DT "C4'" "H4'" sing N N 200
DT "O4'" "C1'" sing N N 201
DT "C3'" "O3'" sing N N 202
DT "C3'" "C2'" sing N N 203
DT "C3'" "H3'" sing N N 204
DT "O3'" "HO3'" sing N N 205
DT "C2'" "C1'" sing N N 206
DT "C2'" "H2'" sing N N 207
DT "C2'" "H2''" sing N N 208
DT "C1'" N1 sing N N 209
DT "C1'" "H1'" sing N N 210
DT N1 C2 sing N N 211
DT N1 C6 sing N N 212
DT C2 O2 doub N N 213
DT C2 N3 sing N N 214
DT N3 C4 sing N N 215
DT N3 H3 sing N N 216
DT C4 O4 doub N N 217
DT C4 C5 sing N N 218
DT C5 C7 sing N N 219
DT C5 C6 doub N N 220
DT C7 H71 sing N N 221
DT C7 H72 sing N N 222
DT C7 H73 sing N N 223
DT C6 H6 sing N N 224
G OP3 P sing N N 225
G OP3 HOP3 sing N N 226
G P OP1 doub N N 227
G P OP2 sing N N 228
G P "O5'" sing N N 229
G OP2 HOP2 sing N N 230
G "O5'" "C5'" sing N N 231
G "C5'" "C4'" sing N N 232
G "C5'" "H5'" sing N N 233
G "C5'" "H5''" sing N N 234
G "C4'" "O4'" sing N N 235
G "C4'" "C3'" sing N N 236
G "C4'" "H4'" sing N N 237
G "O4'" "C1'" sing N N 238
G "C3'" "O3'" sing N N 239
G "C3'" "C2'" sing N N 240
G "C3'" "H3'" sing N N 241
G "O3'" "HO3'" sing N N 242
G "C2'" "O2'" sing N N 243
G "C2'" "C1'" sing N N 244
G "C2'" "H2'" sing N N 245
G "O2'" "HO2'" sing N N 246
G "C1'" N9 sing N N 247
G "C1'" "H1'" sing N N 248
G N9 C8 sing Y N 249
G N9 C4 sing Y N 250
G C8 N7 doub Y N 251
G C8 H8 sing N N 252
G N7 C5 sing Y N 253
G C5 C6 sing N N 254
G C5 C4 doub Y N 255
G C6 O6 doub N N 256
G C6 N1 sing N N 257
G N1 C2 sing N N 258
G N1 H1 sing N N 259
G C2 N2 sing N N 260
G C2 N3 doub N N 261
G N2 H21 sing N N 262
G N2 H22 sing N N 263
G N3 C4 sing N N 264
U OP3 P sing N N 265
U OP3 HOP3 sing N N 266
U P OP1 doub N N 267
U P OP2 sing N N 268
U P "O5'" sing N N 269
U OP2 HOP2 sing N N 270
U "O5'" "C5'" sing N N 271
U "C5'" "C4'" sing N N 272
U "C5'" "H5'" sing N N 273
U "C5'" "H5''" sing N N 274
U "C4'" "O4'" sing N N 275
U "C4'" "C3'" sing N N 276
U "C4'" "H4'" sing N N 277
U "O4'" "C1'" sing N N 278
U "C3'" "O3'" sing N N 279
U "C3'" "C2'" sing N N 280
U "C3'" "H3'" sing N N 281
U "O3'" "HO3'" sing N N 282
U "C2'" "O2'" sing N N 283
U "C2'" "C1'" sing N N 284
U "C2'" "H2'" sing N N 285
U "O2'" "HO2'" sing N N 286
U "C1'" N1 sing N N 287
U "C1'" "H1'" sing N N 288
U N1 C2 sing N N 289
U N1 C6 sing N N 290
U C2 O2 doub N N 291
U C2 N3 sing N N 292
U N3 C4 sing N N 293
U N3 H3 sing N N 294
U C4 O4 doub N N 295
U C4 C5 sing N N 296
U C5 C6 doub N N 297
U C5 H5 sing N N 298
U C6 H6 sing N N 299
U7B OP1 P doub N N 300
U7B P "O5'" sing N N 301
U7B P OP2 sing N N 302
U7B "C5'" "C4'" sing N N 303
U7B "C5'" "O5'" sing N N 304
U7B "O4'" "C4'" sing N N 305
U7B "O4'" "C1'" sing N N 306
U7B "C4'" "C3'" sing N N 307
U7B "C1'" N1 sing N N 308
U7B "C1'" "C2'" sing N N 309
U7B N1 C6 sing N N 310
U7B N1 C2 sing N N 311
U7B O2 C2 doub N N 312
U7B C6 C5 doub N N 313
U7B C2 N3 sing N N 314
U7B C5 C4 sing N N 315
U7B N3 C4 doub N N 316
U7B "C3'" "O3'" sing N N 317
U7B "C3'" "C2'" sing N N 318
U7B C4 N4 sing N N 319
U7B "C2'" F1 sing N N 320
U7B "C2'" F2 sing N N 321
U7B "C5'" "H5''" sing N N 322
U7B "C5'" "H5'" sing N N 323
U7B "C4'" "H4'" sing N N 324
U7B "C3'" "H3'" sing N N 325
U7B "O3'" H1 sing N N 326
U7B "C1'" "H1'" sing N N 327
U7B N4 H42 sing N N 328
U7B N4 H41 sing N N 329
U7B C5 H5 sing N N 330
U7B C6 H6 sing N N 331
U7B OP2 H3 sing N N 332
U7B P OP3 sing N N 333
U7B OP3 H2 sing N N 334
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
7NBL 'double helix'
7NBL 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DT 2 1_555 B A 7 1_555 -0.335 -0.043 0.036 -4.632 -2.754 8.199 1 A_DT2:A15_B A 2 ? B 15 ? 20 1
1 A DA 3 1_555 B U 6 1_555 0.115 -0.119 0.512 1.676 -3.995 2.909 2 A_DA3:U14_B A 3 ? B 14 ? 20 1
1 A U7B 4 1_555 B G 5 1_555 0.443 -0.173 0.488 -23.233 -0.084 -2.196 3 A_U7B4:G13_B A 4 ? B 13 ? 19 1
1 A DA 5 1_555 B U 4 1_555 0.335 0.004 0.309 0.391 -3.448 -7.925 4 A_DA5:U12_B A 5 ? B 12 ? 20 1
1 A DC 6 1_555 B G 3 1_555 0.526 -0.223 0.342 9.290 -3.809 0.457 5 A_DC6:G11_B A 6 ? B 11 ? 19 1
1 A DG 7 1_555 B C 2 1_555 -0.110 -0.158 0.192 6.607 -14.887 -0.052 6 A_DG7:C10_B A 7 ? B 10 ? 19 1
1 A DG 8 1_555 B C 1 1_555 -0.615 -0.261 0.143 -9.869 -16.940 -1.611 7 A_DG8:C9_B A 8 ? B 9 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DT 2 1_555 B A 7 1_555 A DA 3 1_555 B U 6 1_555 -0.849 -1.500 3.000 -2.819 3.239 31.653 -3.259 1.081 2.899 5.904 5.139
31.935 1 AA_DT2DA3:U14A15_BB A 2 ? B 15 ? A 3 ? B 14 ?
1 A DA 3 1_555 B U 6 1_555 A U7B 4 1_555 B G 5 1_555 -0.835 -1.574 4.296 -1.632 16.261 30.875 -5.624 1.094 3.141 28.202 2.831
34.840 2 AA_DA3U7B4:G13U14_BB A 3 ? B 14 ? A 4 ? B 13 ?
1 A U7B 4 1_555 B G 5 1_555 A DA 5 1_555 B U 4 1_555 -0.343 -0.963 2.658 1.624 1.833 30.961 -2.081 0.891 2.577 3.426 -3.036
31.055 3 AA_U7B4DA5:U12G13_BB A 4 ? B 13 ? A 5 ? B 12 ?
1 A DA 5 1_555 B U 4 1_555 A DC 6 1_555 B G 3 1_555 0.984 -0.949 3.142 -2.398 -0.643 31.277 -1.641 -2.250 3.078 -1.191 4.439
31.372 4 AA_DA5DC6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ?
1 A DC 6 1_555 B G 3 1_555 A DG 7 1_555 B C 2 1_555 -0.858 -0.711 3.188 -1.504 3.564 36.533 -1.600 1.162 3.139 5.665 2.391
36.730 5 AA_DC6DG7:C10G11_BB A 6 ? B 11 ? A 7 ? B 10 ?
1 A DG 7 1_555 B C 2 1_555 A DG 8 1_555 B C 1 1_555 -0.247 -1.547 3.519 -1.938 5.975 33.503 -3.627 0.102 3.212 10.252 3.326
34.070 6 AA_DG7DG8:C9C10_BB A 7 ? B 10 ? A 8 ? B 9 ?
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'Spanish Ministry of Science, Innovation, and Universities' Spain PRE2018-083173 1
'Spanish Ministry of Science, Innovation, and Universities' Spain BFU2017-89707-P 2
#
_pdbx_entity_instance_feature.ordinal 1
_pdbx_entity_instance_feature.comp_id U7B
_pdbx_entity_instance_feature.asym_id ?
_pdbx_entity_instance_feature.seq_num ?
_pdbx_entity_instance_feature.auth_comp_id U7B
_pdbx_entity_instance_feature.auth_asym_id ?
_pdbx_entity_instance_feature.auth_seq_num ?
_pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION'
_pdbx_entity_instance_feature.details ?
#
_pdbx_nmr_spectrometer.spectrometer_id 1
_pdbx_nmr_spectrometer.model AVANCE
_pdbx_nmr_spectrometer.type ?
_pdbx_nmr_spectrometer.manufacturer Bruker
_pdbx_nmr_spectrometer.field_strength 600
_pdbx_nmr_spectrometer.details ?
#
_atom_sites.entry_id 7NBL
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
F
H
N
O
P
#
loop_