HEADER LYASE 28-JAN-21 7NC7 TITLE CRYSTAL STRUCTURE OF FRUCTOSE-BISPHOSPHATE ALDOLASES FBAC FROM TITLE 2 BACILLUS METHANOLICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.2.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS METHANOLICUS (STRAIN MGA3 / ATCC SOURCE 3 53907); SOURCE 4 ORGANISM_TAXID: 796606; SOURCE 5 STRAIN: MGA3 / ATCC 53907; SOURCE 6 GENE: FBAC, BMMGA3_16125; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GLYCOLYTIC ALDOLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR O.EINSLE,L.ZHANG,D.GUETLE,J.P.JACQUOT REVDAT 3 31-JAN-24 7NC7 1 REMARK REVDAT 2 26-MAY-21 7NC7 1 JRNL REVDAT 1 17-FEB-21 7NC7 0 JRNL AUTH K.SCHULTENKAMPER,D.D.GUTLE,M.G.LOPEZ,L.B.KELLER,L.ZHANG, JRNL AUTH 2 O.EINSLE,J.P.JACQUOT,V.F.WENDISCH JRNL TITL INTERROGATING THE ROLE OF THE TWO DISTINCT JRNL TITL 2 FRUCTOSE-BISPHOSPHATE ALDOLASES OF BACILLUS METHANOLICUS BY JRNL TITL 3 SITE-DIRECTED MUTAGENESIS OF KEY AMINO ACIDS AND GENE JRNL TITL 4 REPRESSION BY CRISPR INTERFERENCE JRNL REF FRONT MICROBIOL V. 12 933 2021 JRNL REFN ESSN 1664-302X JRNL DOI 10.3389/FMICB.2021.669220 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.2 REMARK 3 NUMBER OF REFLECTIONS : 17198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 946 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 475 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 26.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4105 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.319 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.398 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4242 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4130 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5723 ; 1.280 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9563 ; 1.362 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 549 ; 6.279 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;37.501 ;23.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 761 ;17.746 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;21.983 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 554 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4793 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 855 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7NC7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24421 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 27.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3Q94 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH REMARK 280 4.5, 2.0 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.68500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.68500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.98500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.13000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.98500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.13000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.68500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.98500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.13000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.68500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.98500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.13000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 144 REMARK 465 GLU A 145 REMARK 465 ASP A 146 REMARK 465 ASP A 147 REMARK 465 VAL A 148 REMARK 465 ILE A 149 REMARK 465 ALA A 150 REMARK 465 ASP A 151 REMARK 465 TYR A 184 REMARK 465 LYS A 185 REMARK 465 GLY A 186 REMARK 465 GLU A 187 REMARK 465 GLN B 144 REMARK 465 GLU B 145 REMARK 465 ASP B 146 REMARK 465 ASP B 147 REMARK 465 VAL B 148 REMARK 465 ILE B 149 REMARK 465 ALA B 150 REMARK 465 ASP B 151 REMARK 465 TYR B 184 REMARK 465 LYS B 185 REMARK 465 GLY B 186 REMARK 465 GLU B 187 REMARK 465 PRO B 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 447 O HOH B 461 1.84 REMARK 500 OE1 GLU B 235 O HOH B 401 2.10 REMARK 500 O ILE B 198 OG1 THR B 202 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 454 O HOH A 454 3655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 214 C PRO A 215 N 0.165 REMARK 500 PRO B 215 N PRO B 215 CA 0.215 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 215 C - N - CA ANGL. DEV. = 13.1 DEGREES REMARK 500 PRO A 215 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 PRO B 215 C - N - CA ANGL. DEV. = 17.6 DEGREES REMARK 500 PRO B 215 CA - N - CD ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 2 -173.13 -70.00 REMARK 500 ASN A 27 -167.95 -166.99 REMARK 500 HIS A 86 64.94 60.45 REMARK 500 HIS A 110 49.50 -81.00 REMARK 500 ILE A 214 121.62 -37.21 REMARK 500 ASN A 233 -58.46 -128.22 REMARK 500 PRO B 2 37.84 -79.80 REMARK 500 ASN B 27 -165.73 -169.98 REMARK 500 ASN B 233 -56.31 -127.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 479 DISTANCE = 6.62 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 13P A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 13P B 301 DBREF 7NC7 A 1 285 UNP I3EBM6 I3EBM6_BACMM 1 285 DBREF 7NC7 B 1 285 UNP I3EBM6 I3EBM6_BACMM 1 285 SEQRES 1 A 285 MET PRO LEU VAL SER MET THR GLU MET LEU ASN LYS ALA SEQRES 2 A 285 LYS ALA GLU GLY TYR ALA VAL GLY GLN PHE ASN LEU ASN SEQRES 3 A 285 ASN LEU GLU PHE THR GLN ALA ILE LEU LEU ALA ALA GLU SEQRES 4 A 285 GLU GLU LYS SER PRO VAL ILE LEU GLY VAL SER GLU GLY SEQRES 5 A 285 ALA GLY ARG TYR MET GLY GLY PHE LYS THR VAL VAL ASN SEQRES 6 A 285 MET VAL LYS GLY LEU MET GLU ASP TYR LYS ILE THR VAL SEQRES 7 A 285 PRO VAL ALA ILE HIS LEU ASP HIS GLY SER SER PHE GLU SEQRES 8 A 285 LYS CYS LYS GLU VAL ILE ASP ALA GLY PHE THR SER VAL SEQRES 9 A 285 MET ILE ASP ALA SER HIS HIS PRO PHE GLU GLU ASN VAL SEQRES 10 A 285 GLU VAL THR LYS LYS VAL VAL GLU TYR ALA HIS ALA ARG SEQRES 11 A 285 GLY VAL SER VAL GLU ALA GLU LEU GLY THR VAL GLY GLY SEQRES 12 A 285 GLN GLU ASP ASP VAL ILE ALA ASP GLY VAL ILE TYR ALA SEQRES 13 A 285 ASP PRO LYS GLU CYS GLU GLU LEU VAL LYS ARG THR GLY SEQRES 14 A 285 ILE ASP CYS LEU ALA PRO ALA LEU GLY SER VAL HIS GLY SEQRES 15 A 285 PRO TYR LYS GLY GLU PRO ASN LEU GLY PHE LYS GLU MET SEQRES 16 A 285 GLU GLU ILE GLY ARG ILE THR GLY VAL PRO LEU VAL LEU SEQRES 17 A 285 HIS GLY GLY THR GLY ILE PRO THR LYS ASP ILE GLN ARG SEQRES 18 A 285 ALA ILE SER LEU GLY THR ALA LYS ILE ASN VAL ASN THR SEQRES 19 A 285 GLU ASN GLN ILE ALA SER ALA LYS LYS VAL ARG GLU VAL SEQRES 20 A 285 LEU ALA GLU ASN PRO ASN MET TYR ASP PRO ARG LYS TYR SEQRES 21 A 285 LEU GLY PRO ALA ARG ASP ALA ILE LYS GLU THR VAL ILE SEQRES 22 A 285 GLY LYS MET ARG GLU PHE GLY SER SER GLY LYS ALA SEQRES 1 B 285 MET PRO LEU VAL SER MET THR GLU MET LEU ASN LYS ALA SEQRES 2 B 285 LYS ALA GLU GLY TYR ALA VAL GLY GLN PHE ASN LEU ASN SEQRES 3 B 285 ASN LEU GLU PHE THR GLN ALA ILE LEU LEU ALA ALA GLU SEQRES 4 B 285 GLU GLU LYS SER PRO VAL ILE LEU GLY VAL SER GLU GLY SEQRES 5 B 285 ALA GLY ARG TYR MET GLY GLY PHE LYS THR VAL VAL ASN SEQRES 6 B 285 MET VAL LYS GLY LEU MET GLU ASP TYR LYS ILE THR VAL SEQRES 7 B 285 PRO VAL ALA ILE HIS LEU ASP HIS GLY SER SER PHE GLU SEQRES 8 B 285 LYS CYS LYS GLU VAL ILE ASP ALA GLY PHE THR SER VAL SEQRES 9 B 285 MET ILE ASP ALA SER HIS HIS PRO PHE GLU GLU ASN VAL SEQRES 10 B 285 GLU VAL THR LYS LYS VAL VAL GLU TYR ALA HIS ALA ARG SEQRES 11 B 285 GLY VAL SER VAL GLU ALA GLU LEU GLY THR VAL GLY GLY SEQRES 12 B 285 GLN GLU ASP ASP VAL ILE ALA ASP GLY VAL ILE TYR ALA SEQRES 13 B 285 ASP PRO LYS GLU CYS GLU GLU LEU VAL LYS ARG THR GLY SEQRES 14 B 285 ILE ASP CYS LEU ALA PRO ALA LEU GLY SER VAL HIS GLY SEQRES 15 B 285 PRO TYR LYS GLY GLU PRO ASN LEU GLY PHE LYS GLU MET SEQRES 16 B 285 GLU GLU ILE GLY ARG ILE THR GLY VAL PRO LEU VAL LEU SEQRES 17 B 285 HIS GLY GLY THR GLY ILE PRO THR LYS ASP ILE GLN ARG SEQRES 18 B 285 ALA ILE SER LEU GLY THR ALA LYS ILE ASN VAL ASN THR SEQRES 19 B 285 GLU ASN GLN ILE ALA SER ALA LYS LYS VAL ARG GLU VAL SEQRES 20 B 285 LEU ALA GLU ASN PRO ASN MET TYR ASP PRO ARG LYS TYR SEQRES 21 B 285 LEU GLY PRO ALA ARG ASP ALA ILE LYS GLU THR VAL ILE SEQRES 22 B 285 GLY LYS MET ARG GLU PHE GLY SER SER GLY LYS ALA HET 13P A 301 10 HET 13P B 301 10 HETNAM 13P 1,3-DIHYDROXYACETONEPHOSPHATE FORMUL 3 13P 2(C3 H7 O6 P) FORMUL 5 HOH *150(H2 O) HELIX 1 AA1 MET A 6 GLY A 17 1 12 HELIX 2 AA2 ASN A 27 LYS A 42 1 16 HELIX 3 AA3 SER A 50 MET A 57 1 8 HELIX 4 AA4 GLY A 59 TYR A 74 1 16 HELIX 5 AA5 SER A 89 GLY A 100 1 12 HELIX 6 AA6 PRO A 112 ALA A 129 1 18 HELIX 7 AA7 ASP A 157 GLY A 169 1 13 HELIX 8 AA8 GLY A 191 GLY A 203 1 13 HELIX 9 AA9 PRO A 215 LEU A 225 1 11 HELIX 10 AB1 ASN A 233 ASN A 251 1 19 HELIX 11 AB2 PRO A 257 PHE A 279 1 23 HELIX 12 AB3 MET B 6 GLY B 17 1 12 HELIX 13 AB4 ASN B 27 LYS B 42 1 16 HELIX 14 AB5 SER B 50 MET B 57 1 8 HELIX 15 AB6 GLY B 59 TYR B 74 1 16 HELIX 16 AB7 SER B 89 GLY B 100 1 12 HELIX 17 AB8 PRO B 112 ALA B 129 1 18 HELIX 18 AB9 ASP B 157 GLY B 169 1 13 HELIX 19 AC1 GLY B 191 GLY B 203 1 13 HELIX 20 AC2 PRO B 215 LEU B 225 1 11 HELIX 21 AC3 ASN B 233 ASN B 251 1 19 HELIX 22 AC4 ASP B 256 PHE B 279 1 24 SHEET 1 AA1 9 VAL A 20 ASN A 24 0 SHEET 2 AA1 9 VAL A 45 VAL A 49 1 O ILE A 46 N PHE A 23 SHEET 3 AA1 9 VAL A 80 GLY A 87 1 O ALA A 81 N LEU A 47 SHEET 4 AA1 9 SER A 103 ILE A 106 1 O MET A 105 N GLY A 87 SHEET 5 AA1 9 SER A 133 LEU A 138 1 O GLU A 135 N ILE A 106 SHEET 6 AA1 9 CYS A 172 PRO A 175 1 O ALA A 174 N ALA A 136 SHEET 7 AA1 9 LEU A 206 LEU A 208 1 O VAL A 207 N LEU A 173 SHEET 8 AA1 9 THR A 227 VAL A 232 1 O ALA A 228 N LEU A 206 SHEET 9 AA1 9 VAL A 20 ASN A 24 1 N GLN A 22 O ILE A 230 SHEET 1 AA2 9 VAL B 20 ASN B 24 0 SHEET 2 AA2 9 VAL B 45 VAL B 49 1 O ILE B 46 N PHE B 23 SHEET 3 AA2 9 VAL B 80 GLY B 87 1 O ALA B 81 N LEU B 47 SHEET 4 AA2 9 SER B 103 ILE B 106 1 O MET B 105 N GLY B 87 SHEET 5 AA2 9 SER B 133 LEU B 138 1 O GLU B 135 N ILE B 106 SHEET 6 AA2 9 CYS B 172 PRO B 175 1 O ALA B 174 N ALA B 136 SHEET 7 AA2 9 LEU B 206 LEU B 208 1 O VAL B 207 N LEU B 173 SHEET 8 AA2 9 THR B 227 VAL B 232 1 O ALA B 228 N LEU B 206 SHEET 9 AA2 9 VAL B 20 ASN B 24 1 N GLN B 22 O VAL B 232 SITE 1 AC1 11 ASP A 85 HIS A 86 HIS A 181 GLY A 182 SITE 2 AC1 11 HIS A 209 GLY A 210 THR A 212 ASN A 231 SITE 3 AC1 11 VAL A 232 ASN A 233 THR A 234 SITE 1 AC2 10 GLN B 22 ASN B 24 ASP B 85 HIS B 181 SITE 2 AC2 10 GLY B 182 GLY B 210 GLY B 211 THR B 212 SITE 3 AC2 10 ASN B 233 THR B 234 CRYST1 71.970 98.260 139.370 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013895 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010177 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007175 0.00000