HEADER VIRUS LIKE PARTICLE 29-JAN-21 7NCR TITLE CRYO-EM STRUCTURE OF PEPPER CRYPTIC VIRUS 1 VLP COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PUTATIVE COAT PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEPPER CRYPTIC VIRUS 1; SOURCE 3 ORGANISM_TAXID: 369643; SOURCE 4 EXPRESSION_SYSTEM: NICOTIANA BENTHAMIANA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4100 KEYWDS PARTITIVIRUS, VIRUS LIKE PARTICLE, CAPSID EXPDTA ELECTRON MICROSCOPY AUTHOR M.J.BYRNE,F.SAINSBURY,N.A.RANSON REVDAT 1 19-MAY-21 7NCR 0 JRNL AUTH M.J.BYRNE,F.SAINSBURY,N.A.RANSON,A.KASHYAP,L.ESQUIROL JRNL TITL STRUCTURE OF PEPPER CRYPTIC VIRUS 1 VLP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.900 REMARK 3 NUMBER OF PARTICLES : 90000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7NCR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113614. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PEPPER CRYPTIC VIRUS 1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 112.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 120-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809017 0.309017 -0.500000 104.13921 REMARK 350 BIOMT2 2 0.309017 0.500000 0.809017 -168.50079 REMARK 350 BIOMT3 2 0.500000 -0.809017 0.309017 272.64001 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 0.809017 -0.309017 -0.500000 272.63999 REMARK 350 BIOMT2 4 0.309017 -0.500000 0.809017 104.13921 REMARK 350 BIOMT3 4 -0.500000 -0.809017 -0.309017 713.78079 REMARK 350 BIOMT1 5 -0.809017 -0.309017 -0.500000 713.78079 REMARK 350 BIOMT2 5 -0.309017 -0.500000 0.809017 272.64000 REMARK 350 BIOMT3 5 -0.500000 0.809017 0.309017 104.13921 REMARK 350 BIOMT1 6 -0.500000 -0.809017 0.309017 545.28000 REMARK 350 BIOMT2 6 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 6 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 7 -0.500000 -0.809017 0.309017 545.28000 REMARK 350 BIOMT3 7 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 8 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 8 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 8 -0.500000 -0.809017 0.309017 545.28001 REMARK 350 BIOMT1 9 0.809017 0.309017 0.500000 -168.50080 REMARK 350 BIOMT2 9 -0.309017 -0.500000 0.809017 272.64000 REMARK 350 BIOMT3 9 0.500000 -0.809017 -0.309017 441.14079 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 545.28000 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 -0.00001 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 545.28001 REMARK 350 BIOMT1 11 -0.809017 0.309017 0.500000 272.64000 REMARK 350 BIOMT2 11 0.309017 -0.500000 0.809017 104.13921 REMARK 350 BIOMT3 11 0.500000 0.809017 0.309017 -168.50079 REMARK 350 BIOMT1 12 0.309017 0.500000 -0.809017 272.64000 REMARK 350 BIOMT2 12 0.500000 -0.809017 -0.309017 441.14079 REMARK 350 BIOMT3 12 -0.809017 -0.309017 -0.500000 713.78080 REMARK 350 BIOMT1 13 0.000000 0.000000 1.000000 -0.00001 REMARK 350 BIOMT2 13 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 14 0.309017 -0.500000 0.809017 104.13921 REMARK 350 BIOMT2 14 -0.500000 -0.809017 -0.309017 713.78079 REMARK 350 BIOMT3 14 0.809017 -0.309017 -0.500000 272.64001 REMARK 350 BIOMT1 15 -0.309017 -0.500000 0.809017 272.63998 REMARK 350 BIOMT2 15 -0.500000 0.809017 0.309017 104.13921 REMARK 350 BIOMT3 15 -0.809017 -0.309017 -0.500000 713.78079 REMARK 350 BIOMT1 16 0.500000 -0.809017 0.309017 272.64000 REMARK 350 BIOMT2 16 -0.809017 -0.309017 0.500000 441.14079 REMARK 350 BIOMT3 16 -0.309017 -0.500000 -0.809017 713.78080 REMARK 350 BIOMT1 17 -0.809017 -0.309017 0.500000 441.14078 REMARK 350 BIOMT2 17 0.309017 0.500000 0.809017 -168.50079 REMARK 350 BIOMT3 17 -0.500000 0.809017 -0.309017 272.64001 REMARK 350 BIOMT1 18 0.309017 0.500000 0.809017 -168.50079 REMARK 350 BIOMT2 18 0.500000 -0.809017 0.309017 272.64001 REMARK 350 BIOMT3 18 0.809017 0.309017 -0.500000 104.13921 REMARK 350 BIOMT1 19 0.500000 0.809017 0.309017 -168.50079 REMARK 350 BIOMT2 19 0.809017 -0.309017 -0.500000 272.64001 REMARK 350 BIOMT3 19 -0.309017 0.500000 -0.809017 441.14080 REMARK 350 BIOMT1 20 0.500000 -0.809017 -0.309017 441.14079 REMARK 350 BIOMT2 20 -0.809017 -0.309017 -0.500000 713.78079 REMARK 350 BIOMT3 20 0.309017 0.500000 -0.809017 272.64001 REMARK 350 BIOMT1 21 -1.000000 0.000000 0.000000 545.28000 REMARK 350 BIOMT2 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 0.000000 -1.000000 545.28001 REMARK 350 BIOMT1 22 -0.500000 -0.809017 -0.309017 713.78078 REMARK 350 BIOMT2 22 -0.809017 0.309017 0.500000 272.63999 REMARK 350 BIOMT3 22 -0.309017 0.500000 -0.809017 441.14079 REMARK 350 BIOMT1 23 0.000000 0.000000 -1.000000 545.28001 REMARK 350 BIOMT2 23 -1.000000 0.000000 0.000000 545.28000 REMARK 350 BIOMT3 23 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 24 -0.500000 0.809017 0.309017 104.13921 REMARK 350 BIOMT2 24 0.809017 0.309017 0.500000 -168.50079 REMARK 350 BIOMT3 24 0.309017 0.500000 -0.809017 272.64001 REMARK 350 BIOMT1 25 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 25 0.000000 -1.000000 0.000000 545.28001 REMARK 350 BIOMT3 25 0.000000 0.000000 -1.000000 545.28000 REMARK 350 BIOMT1 26 0.309017 0.500000 -0.809017 272.64001 REMARK 350 BIOMT2 26 -0.500000 0.809017 0.309017 104.13921 REMARK 350 BIOMT3 26 0.809017 0.309017 0.500000 -168.50079 REMARK 350 BIOMT1 27 0.000000 0.000000 -1.000000 545.28001 REMARK 350 BIOMT2 27 1.000000 0.000000 0.000000 -0.00001 REMARK 350 BIOMT3 27 0.000000 -1.000000 0.000000 545.28001 REMARK 350 BIOMT1 28 -0.309017 0.500000 -0.809017 441.14080 REMARK 350 BIOMT2 28 -0.500000 -0.809017 -0.309017 713.78078 REMARK 350 BIOMT3 28 -0.809017 0.309017 0.500000 272.63999 REMARK 350 BIOMT1 29 -0.809017 0.309017 -0.500000 545.28001 REMARK 350 BIOMT2 29 0.309017 -0.500000 -0.809017 545.28000 REMARK 350 BIOMT3 29 -0.500000 -0.809017 0.309017 545.28000 REMARK 350 BIOMT1 30 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 30 -0.809017 0.309017 -0.500000 545.28000 REMARK 350 BIOMT3 30 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 31 0.309017 -0.500000 -0.809017 545.28000 REMARK 350 BIOMT2 31 0.500000 0.809017 -0.309017 -0.00001 REMARK 350 BIOMT3 31 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 32 -0.309017 -0.500000 -0.809017 713.78079 REMARK 350 BIOMT2 32 -0.500000 0.809017 -0.309017 272.64000 REMARK 350 BIOMT3 32 0.809017 0.309017 -0.500000 104.13922 REMARK 350 BIOMT1 33 -0.500000 0.809017 -0.309017 272.64000 REMARK 350 BIOMT2 33 0.809017 0.309017 -0.500000 104.13922 REMARK 350 BIOMT3 33 -0.309017 -0.500000 -0.809017 713.78079 REMARK 350 BIOMT1 34 -0.309017 0.500000 -0.809017 441.14079 REMARK 350 BIOMT2 34 0.500000 0.809017 0.309017 -168.50079 REMARK 350 BIOMT3 34 0.809017 -0.309017 -0.500000 272.64001 REMARK 350 BIOMT1 35 0.809017 0.309017 -0.500000 104.13922 REMARK 350 BIOMT2 35 -0.309017 -0.500000 -0.809017 713.78078 REMARK 350 BIOMT3 35 -0.500000 0.809017 -0.309017 272.64000 REMARK 350 BIOMT1 36 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 -1.000000 545.28002 REMARK 350 BIOMT3 36 -1.000000 0.000000 0.000000 545.27999 REMARK 350 BIOMT1 37 0.809017 -0.309017 -0.500000 272.64001 REMARK 350 BIOMT2 37 -0.309017 0.500000 -0.809017 441.14079 REMARK 350 BIOMT3 37 0.500000 0.809017 0.309017 -168.50079 REMARK 350 BIOMT1 38 -0.809017 -0.309017 -0.500000 713.78079 REMARK 350 BIOMT2 38 0.309017 0.500000 -0.809017 272.64001 REMARK 350 BIOMT3 38 0.500000 -0.809017 -0.309017 441.14079 REMARK 350 BIOMT1 39 -0.500000 -0.809017 0.309017 545.28000 REMARK 350 BIOMT2 39 -0.809017 0.309017 -0.500000 545.28001 REMARK 350 BIOMT3 39 0.309017 -0.500000 -0.809017 545.27999 REMARK 350 BIOMT1 40 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 40 0.500000 0.809017 -0.309017 0.00001 REMARK 350 BIOMT3 40 -0.809017 0.309017 -0.500000 545.28000 REMARK 350 BIOMT1 41 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 41 0.309017 -0.500000 -0.809017 545.28001 REMARK 350 BIOMT3 41 0.500000 0.809017 -0.309017 -0.00001 REMARK 350 BIOMT1 42 0.809017 0.309017 0.500000 -168.50079 REMARK 350 BIOMT2 42 0.309017 0.500000 -0.809017 272.64000 REMARK 350 BIOMT3 42 -0.500000 0.809017 0.309017 104.13921 REMARK 350 BIOMT1 43 0.000000 -1.000000 0.000000 545.28000 REMARK 350 BIOMT2 43 0.000000 0.000000 -1.000000 545.27999 REMARK 350 BIOMT3 43 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 44 -0.809017 0.309017 0.500000 272.64000 REMARK 350 BIOMT2 44 -0.309017 0.500000 -0.809017 441.14080 REMARK 350 BIOMT3 44 -0.500000 -0.809017 -0.309017 713.78079 REMARK 350 BIOMT1 45 -0.809017 0.309017 -0.500000 545.28000 REMARK 350 BIOMT2 45 -0.309017 0.500000 0.809017 -0.00001 REMARK 350 BIOMT3 45 0.500000 0.809017 -0.309017 0.00001 REMARK 350 BIOMT1 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 46 -1.000000 0.000000 0.000000 545.28001 REMARK 350 BIOMT3 46 0.000000 -1.000000 0.000000 545.28000 REMARK 350 BIOMT1 47 0.309017 -0.500000 0.809017 104.13921 REMARK 350 BIOMT2 47 0.500000 0.809017 0.309017 -168.50079 REMARK 350 BIOMT3 47 -0.809017 0.309017 0.500000 272.64000 REMARK 350 BIOMT1 48 -0.309017 -0.500000 0.809017 272.64001 REMARK 350 BIOMT2 48 0.500000 -0.809017 -0.309017 441.14078 REMARK 350 BIOMT3 48 0.809017 0.309017 0.500000 -168.50079 REMARK 350 BIOMT1 49 0.500000 -0.809017 0.309017 272.64000 REMARK 350 BIOMT2 49 0.809017 0.309017 -0.500000 104.13922 REMARK 350 BIOMT3 49 0.309017 0.500000 0.809017 -168.50079 REMARK 350 BIOMT1 50 -0.809017 -0.309017 0.500000 441.14079 REMARK 350 BIOMT2 50 -0.309017 -0.500000 -0.809017 713.78080 REMARK 350 BIOMT3 50 0.500000 -0.809017 0.309017 272.63999 REMARK 350 BIOMT1 51 0.309017 0.500000 0.809017 -168.50079 REMARK 350 BIOMT2 51 -0.500000 0.809017 -0.309017 272.64001 REMARK 350 BIOMT3 51 -0.809017 -0.309017 0.500000 441.14078 REMARK 350 BIOMT1 52 0.500000 0.809017 0.309017 -168.50079 REMARK 350 BIOMT2 52 -0.809017 0.309017 0.500000 272.64000 REMARK 350 BIOMT3 52 0.309017 -0.500000 0.809017 104.13921 REMARK 350 BIOMT1 53 0.500000 -0.809017 -0.309017 441.14079 REMARK 350 BIOMT2 53 0.809017 0.309017 0.500000 -168.50079 REMARK 350 BIOMT3 53 -0.309017 -0.500000 0.809017 272.64000 REMARK 350 BIOMT1 54 -1.000000 0.000000 0.000000 545.28001 REMARK 350 BIOMT2 54 0.000000 -1.000000 0.000000 545.27999 REMARK 350 BIOMT3 54 0.000000 0.000000 1.000000 -0.00001 REMARK 350 BIOMT1 55 -0.500000 -0.809017 -0.309017 713.78080 REMARK 350 BIOMT2 55 0.809017 -0.309017 -0.500000 272.63999 REMARK 350 BIOMT3 55 0.309017 -0.500000 0.809017 104.13921 REMARK 350 BIOMT1 56 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 56 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 56 0.309017 -0.500000 -0.809017 545.28001 REMARK 350 BIOMT1 57 -0.500000 0.809017 0.309017 104.13922 REMARK 350 BIOMT2 57 -0.809017 -0.309017 -0.500000 713.78078 REMARK 350 BIOMT3 57 -0.309017 -0.500000 0.809017 272.64000 REMARK 350 BIOMT1 58 0.309017 -0.500000 -0.809017 545.28001 REMARK 350 BIOMT2 58 -0.500000 -0.809017 0.309017 545.27999 REMARK 350 BIOMT3 58 -0.809017 0.309017 -0.500000 545.28000 REMARK 350 BIOMT1 59 -0.309017 -0.500000 -0.809017 713.78078 REMARK 350 BIOMT2 59 0.500000 -0.809017 0.309017 272.64000 REMARK 350 BIOMT3 59 -0.809017 -0.309017 0.500000 441.14079 REMARK 350 BIOMT1 60 -0.500000 0.809017 -0.309017 272.64000 REMARK 350 BIOMT2 60 -0.809017 -0.309017 0.500000 441.14078 REMARK 350 BIOMT3 60 0.309017 0.500000 0.809017 -168.50079 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 ARG A 4 REMARK 465 VAL A 5 REMARK 465 ASN A 6 REMARK 465 ALA A 7 REMARK 465 GLN A 8 REMARK 465 ASP A 9 REMARK 465 ASP A 10 REMARK 465 ASP A 11 REMARK 465 THR A 12 REMARK 465 VAL A 13 REMARK 465 VAL A 14 REMARK 465 PRO A 15 REMARK 465 HIS A 16 REMARK 465 GLN A 17 REMARK 465 ALA A 18 REMARK 465 PRO A 19 REMARK 465 LEU A 20 REMARK 465 GLN A 21 REMARK 465 PRO A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 LEU A 25 REMARK 465 GLN A 26 REMARK 465 GLN A 27 REMARK 465 ASP A 28 REMARK 465 ALA A 330 REMARK 465 THR A 331 REMARK 465 GLY A 332 REMARK 465 THR A 333 REMARK 465 THR A 334 REMARK 465 GLN A 335 REMARK 465 ARG A 336 REMARK 465 ARG A 337 REMARK 465 LYS A 338 REMARK 465 ILE A 339 REMARK 465 ARG A 340 REMARK 465 ARG A 341 REMARK 465 PRO A 342 REMARK 465 SER A 343 REMARK 465 ALA A 344 REMARK 465 THR A 345 REMARK 465 SER A 346 REMARK 465 ALA A 347 REMARK 465 SER A 348 REMARK 465 THR A 349 REMARK 465 GLY A 350 REMARK 465 ALA A 351 REMARK 465 ALA A 352 REMARK 465 ILE A 353 REMARK 465 ILE A 354 REMARK 465 ILE A 355 REMARK 465 ARG A 356 REMARK 465 ASP A 357 REMARK 465 THR A 358 REMARK 465 PRO A 359 REMARK 465 GLY A 360 REMARK 465 THR A 361 REMARK 465 ALA A 362 REMARK 465 SER A 363 REMARK 465 THR A 364 REMARK 465 ALA A 365 REMARK 465 THR A 366 REMARK 465 THR A 367 REMARK 465 SER A 368 REMARK 465 THR A 369 REMARK 465 THR A 370 REMARK 465 GLU A 371 REMARK 465 THR A 372 REMARK 465 GLU A 373 REMARK 465 VAL A 374 REMARK 465 THR A 375 REMARK 465 PHE A 376 REMARK 465 PRO A 377 REMARK 465 PRO A 378 REMARK 465 ALA A 412 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ASP B 3 REMARK 465 ARG B 4 REMARK 465 VAL B 5 REMARK 465 ASN B 6 REMARK 465 ALA B 7 REMARK 465 GLN B 8 REMARK 465 ASP B 9 REMARK 465 ASP B 10 REMARK 465 ASP B 11 REMARK 465 THR B 12 REMARK 465 VAL B 13 REMARK 465 VAL B 14 REMARK 465 PRO B 15 REMARK 465 HIS B 16 REMARK 465 GLN B 17 REMARK 465 ALA B 18 REMARK 465 PRO B 19 REMARK 465 LEU B 20 REMARK 465 GLN B 21 REMARK 465 PRO B 22 REMARK 465 ALA B 23 REMARK 465 ALA B 24 REMARK 465 LEU B 25 REMARK 465 GLN B 26 REMARK 465 GLN B 27 REMARK 465 ASP B 28 REMARK 465 ALA B 330 REMARK 465 THR B 331 REMARK 465 GLY B 332 REMARK 465 THR B 333 REMARK 465 THR B 334 REMARK 465 GLN B 335 REMARK 465 ARG B 336 REMARK 465 ARG B 337 REMARK 465 LYS B 338 REMARK 465 ILE B 339 REMARK 465 ARG B 340 REMARK 465 ARG B 341 REMARK 465 PRO B 342 REMARK 465 SER B 343 REMARK 465 ALA B 344 REMARK 465 THR B 345 REMARK 465 SER B 346 REMARK 465 ALA B 347 REMARK 465 SER B 348 REMARK 465 THR B 349 REMARK 465 GLY B 350 REMARK 465 ALA B 351 REMARK 465 ALA B 352 REMARK 465 ILE B 353 REMARK 465 ILE B 354 REMARK 465 ILE B 355 REMARK 465 ARG B 356 REMARK 465 ASP B 357 REMARK 465 THR B 358 REMARK 465 PRO B 359 REMARK 465 GLY B 360 REMARK 465 THR B 361 REMARK 465 ALA B 362 REMARK 465 SER B 363 REMARK 465 THR B 364 REMARK 465 ALA B 365 REMARK 465 THR B 366 REMARK 465 THR B 367 REMARK 465 SER B 368 REMARK 465 THR B 369 REMARK 465 THR B 370 REMARK 465 GLU B 371 REMARK 465 THR B 372 REMARK 465 GLU B 373 REMARK 465 VAL B 374 REMARK 465 THR B 375 REMARK 465 PHE B 376 REMARK 465 PRO B 377 REMARK 465 PRO B 378 REMARK 465 ALA B 412 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 396 CG CD OE1 OE2 REMARK 470 GLU B 396 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 71 OD2 ASP A 145 2.09 REMARK 500 O ILE A 259 NH1 ARG B 402 2.15 REMARK 500 OE2 GLU A 398 OG SER A 401 2.16 REMARK 500 NH2 ARG A 299 O GLY B 269 2.18 REMARK 500 NH1 ARG B 48 OE2 GLU B 165 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 60 -6.94 67.14 REMARK 500 PRO A 157 91.95 -67.12 REMARK 500 ASN A 193 32.15 -98.23 REMARK 500 ASN A 236 -157.93 -87.37 REMARK 500 ALA A 247 -0.27 79.62 REMARK 500 ASN A 250 20.55 -140.82 REMARK 500 SER A 251 -6.86 74.18 REMARK 500 SER A 281 -169.63 -118.51 REMARK 500 PRO A 290 11.57 -61.79 REMARK 500 THR A 291 67.66 65.67 REMARK 500 LEU A 317 167.24 178.74 REMARK 500 SER B 60 -11.00 71.81 REMARK 500 THR B 93 -159.11 -149.38 REMARK 500 SER B 125 72.88 60.84 REMARK 500 PRO B 157 86.09 -66.51 REMARK 500 ASN B 236 -72.78 -86.64 REMARK 500 SER B 251 -7.51 70.72 REMARK 500 PRO B 290 8.36 -60.46 REMARK 500 THR B 291 70.74 63.55 REMARK 500 PRO B 318 49.11 -77.26 REMARK 500 ASP B 319 -4.41 67.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-12270 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF PEPPER CRYPTIC VIRUS 1 VLP DBREF 7NCR A 1 412 UNP F8VBM8 F8VBM8_9VIRU 1 412 DBREF 7NCR B 1 412 UNP F8VBM8 F8VBM8_9VIRU 1 412 SEQRES 1 A 412 MET GLY ASP ARG VAL ASN ALA GLN ASP ASP ASP THR VAL SEQRES 2 A 412 VAL PRO HIS GLN ALA PRO LEU GLN PRO ALA ALA LEU GLN SEQRES 3 A 412 GLN ASP LEU THR ARG SER ALA ASP TYR LEU LEU ASP ASN SEQRES 4 A 412 VAL ARG ILE GLY ASN HIS ARG GLN ARG TYR ASP LYS TYR SEQRES 5 A 412 ARG ARG TYR VAL LEU LEU ARG SER SER GLU ILE PHE THR SEQRES 6 A 412 SER LEU VAL ALA ILE TYR ALA HIS ILE PHE SER SER TYR SEQRES 7 A 412 TRP GLN HIS PHE ARG ARG PHE THR ASP GLN PHE GLN ALA SEQRES 8 A 412 PRO THR GLY VAL GLN LEU PRO THR PHE VAL ALA ARG VAL SEQRES 9 A 412 TYR ILE SER THR TRP LEU HIS ASP LEU TYR CYS SER ILE SEQRES 10 A 412 ARG GLU ALA THR ARG SER ILE SER PRO LEU ALA PHE ASN SEQRES 11 A 412 GLU ARG TYR SER TYR GLU LEU LEU PRO TYR SER THR GLU SEQRES 12 A 412 TYR ASP PRO PHE LEU ALA PHE LEU SER MET SER ILE LYS SEQRES 13 A 412 PRO THR HIS ILE GLN HIS THR PRO GLU ASN THR LEU TRP SEQRES 14 A 412 ILE PRO ILE LEU CYS GLU ASN TYR ASP TRP ASP ARG ASN SEQRES 15 A 412 GLU ALA ASN HIS ASN PRO PHE GLY ILE THR ASN PHE THR SEQRES 16 A 412 LEU ASN SER ASN LEU PHE TYR GLY LEU LEU ALA ILE LEU SEQRES 17 A 412 LYS GLU ARG LYS GLU PHE LYS LEU SER THR LEU THR THR SEQRES 18 A 412 ASN THR ILE GLY ARG PRO CYS TRP LEU PHE ASP TRP HIS SEQRES 19 A 412 ASP ASN VAL GLN VAL CYS ALA TRP PHE PRO ARG GLU ALA SEQRES 20 A 412 ASN PHE ASN SER GLN ASP VAL THR ALA ALA TYR ILE ILE SEQRES 21 A 412 GLY VAL ALA CYS THR PRO LYS LEU GLY PRO SER ASP ASP SEQRES 22 A 412 ASP ALA TRP LYS TYR TYR ALA SER LEU ASN SER VAL PRO SEQRES 23 A 412 THR PHE THR PRO THR GLU PRO ARG LEU THR ASN ARG ARG SEQRES 24 A 412 SER TYR GLY ALA TYR GLU VAL ARG THR ARG GLU THR GLU SEQRES 25 A 412 ASN ASN TYR PHE LEU PRO ASP SER LEU LEU ASN ILE ILE SEQRES 26 A 412 GLU ASP PHE THR ALA THR GLY THR THR GLN ARG ARG LYS SEQRES 27 A 412 ILE ARG ARG PRO SER ALA THR SER ALA SER THR GLY ALA SEQRES 28 A 412 ALA ILE ILE ILE ARG ASP THR PRO GLY THR ALA SER THR SEQRES 29 A 412 ALA THR THR SER THR THR GLU THR GLU VAL THR PHE PRO SEQRES 30 A 412 PRO VAL ILE ARG THR LYS ILE ARG ASP TRP TYR TYR HIS SEQRES 31 A 412 SER ARG VAL ILE LEU GLU LEU GLU ASP ASN SER ARG THR SEQRES 32 A 412 ALA ALA LEU ARG MET PHE ILE ILE ALA SEQRES 1 B 412 MET GLY ASP ARG VAL ASN ALA GLN ASP ASP ASP THR VAL SEQRES 2 B 412 VAL PRO HIS GLN ALA PRO LEU GLN PRO ALA ALA LEU GLN SEQRES 3 B 412 GLN ASP LEU THR ARG SER ALA ASP TYR LEU LEU ASP ASN SEQRES 4 B 412 VAL ARG ILE GLY ASN HIS ARG GLN ARG TYR ASP LYS TYR SEQRES 5 B 412 ARG ARG TYR VAL LEU LEU ARG SER SER GLU ILE PHE THR SEQRES 6 B 412 SER LEU VAL ALA ILE TYR ALA HIS ILE PHE SER SER TYR SEQRES 7 B 412 TRP GLN HIS PHE ARG ARG PHE THR ASP GLN PHE GLN ALA SEQRES 8 B 412 PRO THR GLY VAL GLN LEU PRO THR PHE VAL ALA ARG VAL SEQRES 9 B 412 TYR ILE SER THR TRP LEU HIS ASP LEU TYR CYS SER ILE SEQRES 10 B 412 ARG GLU ALA THR ARG SER ILE SER PRO LEU ALA PHE ASN SEQRES 11 B 412 GLU ARG TYR SER TYR GLU LEU LEU PRO TYR SER THR GLU SEQRES 12 B 412 TYR ASP PRO PHE LEU ALA PHE LEU SER MET SER ILE LYS SEQRES 13 B 412 PRO THR HIS ILE GLN HIS THR PRO GLU ASN THR LEU TRP SEQRES 14 B 412 ILE PRO ILE LEU CYS GLU ASN TYR ASP TRP ASP ARG ASN SEQRES 15 B 412 GLU ALA ASN HIS ASN PRO PHE GLY ILE THR ASN PHE THR SEQRES 16 B 412 LEU ASN SER ASN LEU PHE TYR GLY LEU LEU ALA ILE LEU SEQRES 17 B 412 LYS GLU ARG LYS GLU PHE LYS LEU SER THR LEU THR THR SEQRES 18 B 412 ASN THR ILE GLY ARG PRO CYS TRP LEU PHE ASP TRP HIS SEQRES 19 B 412 ASP ASN VAL GLN VAL CYS ALA TRP PHE PRO ARG GLU ALA SEQRES 20 B 412 ASN PHE ASN SER GLN ASP VAL THR ALA ALA TYR ILE ILE SEQRES 21 B 412 GLY VAL ALA CYS THR PRO LYS LEU GLY PRO SER ASP ASP SEQRES 22 B 412 ASP ALA TRP LYS TYR TYR ALA SER LEU ASN SER VAL PRO SEQRES 23 B 412 THR PHE THR PRO THR GLU PRO ARG LEU THR ASN ARG ARG SEQRES 24 B 412 SER TYR GLY ALA TYR GLU VAL ARG THR ARG GLU THR GLU SEQRES 25 B 412 ASN ASN TYR PHE LEU PRO ASP SER LEU LEU ASN ILE ILE SEQRES 26 B 412 GLU ASP PHE THR ALA THR GLY THR THR GLN ARG ARG LYS SEQRES 27 B 412 ILE ARG ARG PRO SER ALA THR SER ALA SER THR GLY ALA SEQRES 28 B 412 ALA ILE ILE ILE ARG ASP THR PRO GLY THR ALA SER THR SEQRES 29 B 412 ALA THR THR SER THR THR GLU THR GLU VAL THR PHE PRO SEQRES 30 B 412 PRO VAL ILE ARG THR LYS ILE ARG ASP TRP TYR TYR HIS SEQRES 31 B 412 SER ARG VAL ILE LEU GLU LEU GLU ASP ASN SER ARG THR SEQRES 32 B 412 ALA ALA LEU ARG MET PHE ILE ILE ALA HELIX 1 AA1 LEU A 29 ASN A 39 1 11 HELIX 2 AA2 SER A 61 SER A 77 1 17 HELIX 3 AA3 TYR A 78 PHE A 82 5 5 HELIX 4 AA4 GLN A 96 ILE A 124 1 29 HELIX 5 AA5 SER A 125 TYR A 133 1 9 HELIX 6 AA6 ASP A 145 ILE A 155 1 11 HELIX 7 AA7 ASN A 182 HIS A 186 5 5 HELIX 8 AA8 ASN A 197 ARG A 211 1 15 HELIX 9 AA9 ARG A 226 LEU A 230 5 5 HELIX 10 AB1 SER A 251 ILE A 260 1 10 HELIX 11 AB2 PRO A 318 PHE A 328 1 11 HELIX 12 AB3 GLU A 398 ILE A 411 1 14 HELIX 13 AB4 THR B 30 ASN B 39 1 10 HELIX 14 AB5 SER B 61 TYR B 78 1 18 HELIX 15 AB6 TRP B 79 PHE B 82 5 4 HELIX 16 AB7 ARG B 84 PHE B 89 5 6 HELIX 17 AB8 GLN B 96 ILE B 124 1 29 HELIX 18 AB9 SER B 125 ARG B 132 1 8 HELIX 19 AC1 PHE B 147 ILE B 155 1 9 HELIX 20 AC2 ASN B 197 ARG B 211 1 15 HELIX 21 AC3 ARG B 226 LEU B 230 5 5 HELIX 22 AC4 GLN B 252 ILE B 260 1 9 HELIX 23 AC5 SER B 320 ASP B 327 1 8 HELIX 24 AC6 GLU B 398 ILE B 411 1 14 SHEET 1 AA1 4 ILE A 42 HIS A 45 0 SHEET 2 AA1 4 SER A 391 ILE A 394 -1 O ARG A 392 N HIS A 45 SHEET 3 AA1 4 VAL B 239 ALA B 241 -1 O VAL B 239 N VAL A 393 SHEET 4 AA1 4 ASP B 232 TRP B 233 -1 N ASP B 232 O CYS B 240 SHEET 1 AA2 3 TYR A 52 LEU A 57 0 SHEET 2 AA2 3 THR A 167 ILE A 172 1 O LEU A 168 N TYR A 52 SHEET 3 AA2 3 THR A 158 ILE A 160 -1 N ILE A 160 O THR A 167 SHEET 1 AA3 2 GLU A 143 TYR A 144 0 SHEET 2 AA3 2 SER A 217 THR A 218 -1 O SER A 217 N TYR A 144 SHEET 1 AA4 4 ASP A 232 TRP A 233 0 SHEET 2 AA4 4 VAL A 239 ALA A 241 -1 O CYS A 240 N ASP A 232 SHEET 3 AA4 4 SER B 391 ILE B 394 -1 O VAL B 393 N VAL A 239 SHEET 4 AA4 4 ILE B 42 HIS B 45 -1 N HIS B 45 O ARG B 392 SHEET 1 AA5 3 SER A 271 ASP A 273 0 SHEET 2 AA5 3 ILE B 380 TYR B 389 -1 O ASP B 386 N ASP A 272 SHEET 3 AA5 3 LYS A 277 TYR A 279 -1 N TYR A 279 O ILE B 380 SHEET 1 AA6 3 SER A 271 ASP A 273 0 SHEET 2 AA6 3 ILE B 380 TYR B 389 -1 O ASP B 386 N ASP A 272 SHEET 3 AA6 3 TYR A 304 GLU A 312 -1 N TYR A 304 O TYR B 389 SHEET 1 AA7 3 SER B 271 ASP B 273 0 SHEET 2 AA7 3 ILE A 380 TYR A 389 -1 N ASP A 386 O ASP B 272 SHEET 3 AA7 3 LYS B 277 TYR B 279 -1 O LYS B 277 N THR A 382 SHEET 1 AA8 3 SER B 271 ASP B 273 0 SHEET 2 AA8 3 ILE A 380 TYR A 389 -1 N ASP A 386 O ASP B 272 SHEET 3 AA8 3 TYR B 304 GLU B 312 -1 O TYR B 304 N TYR A 389 SHEET 1 AA9 3 TYR B 52 LEU B 57 0 SHEET 2 AA9 3 THR B 167 ILE B 172 1 O LEU B 168 N TYR B 52 SHEET 3 AA9 3 THR B 158 ILE B 160 -1 N ILE B 160 O THR B 167 SHEET 1 AB1 2 GLU B 143 TYR B 144 0 SHEET 2 AB1 2 SER B 217 THR B 218 -1 O SER B 217 N TYR B 144 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000