HEADER RNA BINDING PROTEIN 01-FEB-21 7NDH TITLE CRYSTAL STRUCTURE OF ZC3H12C PIN DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RIBONUCLEASE ZC3H12C; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12C; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ZC3H12C, KIAA1726; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDO-RIBONUCLEASE, REGNASE, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.GARG,U.HEINEMANN REVDAT 3 31-JAN-24 7NDH 1 REMARK REVDAT 2 02-JUN-21 7NDH 1 JRNL REVDAT 1 19-MAY-21 7NDH 0 JRNL AUTH A.GARG,Y.ROSKE,S.YAMADA,T.UEHATA,O.TAKEUCHI,U.HEINEMANN JRNL TITL PIN AND CCCH ZN-FINGER DOMAINS COORDINATE RNA TARGETING IN JRNL TITL 2 ZC3H12 FAMILY ENDORIBONUCLEASES. JRNL REF NUCLEIC ACIDS RES. V. 49 5369 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33950203 JRNL DOI 10.1093/NAR/GKAB316 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5000 - 4.5594 1.00 2807 149 0.1563 0.1802 REMARK 3 2 4.5594 - 3.6195 1.00 2669 140 0.1380 0.1959 REMARK 3 3 3.6195 - 3.1621 1.00 2603 137 0.1726 0.2072 REMARK 3 4 3.1621 - 2.8730 1.00 2604 137 0.1826 0.2288 REMARK 3 5 2.8730 - 2.6671 1.00 2594 137 0.1855 0.2370 REMARK 3 6 2.6671 - 2.5099 1.00 2570 135 0.1902 0.2063 REMARK 3 7 2.5099 - 2.3842 1.00 2575 135 0.1783 0.2415 REMARK 3 8 2.3842 - 2.2804 1.00 2549 134 0.1804 0.2406 REMARK 3 9 2.2804 - 2.1926 1.00 2556 135 0.1858 0.2080 REMARK 3 10 2.1926 - 2.1170 1.00 2554 134 0.1906 0.2416 REMARK 3 11 2.1170 - 2.0508 1.00 2522 133 0.2144 0.2789 REMARK 3 12 2.0508 - 1.9922 1.00 2551 134 0.2350 0.2443 REMARK 3 13 1.9922 - 1.9400 0.99 2534 134 0.2626 0.2932 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2803 REMARK 3 ANGLE : 1.399 3769 REMARK 3 CHIRALITY : 0.074 401 REMARK 3 PLANARITY : 0.008 493 REMARK 3 DIHEDRAL : 11.777 1073 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3710 35.3403 3.5126 REMARK 3 T TENSOR REMARK 3 T11: 0.2416 T22: 0.1346 REMARK 3 T33: 0.1875 T12: -0.1064 REMARK 3 T13: 0.0067 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 5.2846 L22: 8.1715 REMARK 3 L33: 4.6566 L12: -4.5163 REMARK 3 L13: -0.6992 L23: -3.8051 REMARK 3 S TENSOR REMARK 3 S11: -0.0469 S12: 0.0132 S13: -0.1105 REMARK 3 S21: 0.0012 S22: 0.0796 S23: 0.1865 REMARK 3 S31: -0.1415 S32: -0.1171 S33: -0.0740 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6044 39.2561 7.2340 REMARK 3 T TENSOR REMARK 3 T11: 0.2639 T22: 0.1573 REMARK 3 T33: 0.1591 T12: -0.0583 REMARK 3 T13: -0.0014 T23: -0.0629 REMARK 3 L TENSOR REMARK 3 L11: 3.1232 L22: 5.2768 REMARK 3 L33: 7.3868 L12: 0.1673 REMARK 3 L13: 0.1125 L23: -4.9601 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: -0.1846 S13: 0.1397 REMARK 3 S21: 0.4646 S22: 0.0951 S23: -0.0366 REMARK 3 S31: -0.6691 S32: 0.0773 S33: -0.0302 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 315 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0213 49.1766 -1.0945 REMARK 3 T TENSOR REMARK 3 T11: 0.2727 T22: 0.2646 REMARK 3 T33: 0.3313 T12: 0.0021 REMARK 3 T13: 0.0394 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 8.2956 L22: 7.4716 REMARK 3 L33: 4.2344 L12: 1.9367 REMARK 3 L13: 5.3367 L23: 2.5892 REMARK 3 S TENSOR REMARK 3 S11: -0.1857 S12: 0.4679 S13: 0.9981 REMARK 3 S21: -0.4320 S22: -0.1048 S23: 0.1447 REMARK 3 S31: -0.9363 S32: 0.0474 S33: 0.3401 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 335 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4744 46.7329 -7.0565 REMARK 3 T TENSOR REMARK 3 T11: 0.2524 T22: 0.2246 REMARK 3 T33: 0.2657 T12: -0.0956 REMARK 3 T13: -0.0438 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 3.8860 L22: 5.2567 REMARK 3 L33: 6.3748 L12: 1.9321 REMARK 3 L13: -2.8487 L23: -3.9433 REMARK 3 S TENSOR REMARK 3 S11: 0.1046 S12: 0.2043 S13: 0.2039 REMARK 3 S21: -0.2396 S22: 0.2582 S23: 0.1519 REMARK 3 S31: -0.0899 S32: 0.2549 S33: -0.3855 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 355 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9559 34.1216 -1.2893 REMARK 3 T TENSOR REMARK 3 T11: 0.2834 T22: 0.3390 REMARK 3 T33: 0.3635 T12: -0.0696 REMARK 3 T13: 0.0469 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 7.0987 L22: 4.7417 REMARK 3 L33: 9.5632 L12: -5.2508 REMARK 3 L13: 4.6146 L23: -5.7239 REMARK 3 S TENSOR REMARK 3 S11: 0.2177 S12: 0.5928 S13: -0.0534 REMARK 3 S21: -0.6125 S22: -0.3015 S23: -0.6816 REMARK 3 S31: 0.2517 S32: 0.7090 S33: 0.1247 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 366 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7561 27.0884 -0.0063 REMARK 3 T TENSOR REMARK 3 T11: 0.2679 T22: 0.1796 REMARK 3 T33: 0.2518 T12: -0.0779 REMARK 3 T13: 0.0082 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 8.0972 L22: 5.3390 REMARK 3 L33: 3.3651 L12: -1.2879 REMARK 3 L13: -1.6427 L23: 0.9261 REMARK 3 S TENSOR REMARK 3 S11: -0.0469 S12: 0.4409 S13: -0.3974 REMARK 3 S21: -0.3039 S22: 0.1089 S23: -0.4208 REMARK 3 S31: 0.2004 S32: 0.0603 S33: -0.0297 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 407 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2062 19.7986 12.4236 REMARK 3 T TENSOR REMARK 3 T11: 0.4292 T22: 0.3076 REMARK 3 T33: 0.4365 T12: -0.0339 REMARK 3 T13: -0.0844 T23: 0.0967 REMARK 3 L TENSOR REMARK 3 L11: 5.0408 L22: 7.1360 REMARK 3 L33: 3.6657 L12: 1.7780 REMARK 3 L13: -2.9197 L23: -0.8445 REMARK 3 S TENSOR REMARK 3 S11: 0.3705 S12: -0.7041 S13: -0.9402 REMARK 3 S21: 0.4849 S22: -0.1933 S23: -0.3456 REMARK 3 S31: 0.8199 S32: 0.0876 S33: -0.1983 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 262 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3843 53.2972 0.1090 REMARK 3 T TENSOR REMARK 3 T11: 0.2729 T22: 0.2918 REMARK 3 T33: 0.3219 T12: -0.1613 REMARK 3 T13: -0.0424 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 5.1101 L22: 5.6490 REMARK 3 L33: 7.6477 L12: 2.7053 REMARK 3 L13: -1.3451 L23: -0.6700 REMARK 3 S TENSOR REMARK 3 S11: 0.0791 S12: -0.1646 S13: -0.2914 REMARK 3 S21: 0.4111 S22: -0.3625 S23: -0.2994 REMARK 3 S31: -0.0595 S32: -0.0565 S33: 0.2653 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 287 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0052 52.8389 1.8619 REMARK 3 T TENSOR REMARK 3 T11: 0.2894 T22: 0.3653 REMARK 3 T33: 0.4504 T12: -0.1504 REMARK 3 T13: -0.0920 T23: 0.0667 REMARK 3 L TENSOR REMARK 3 L11: 3.2271 L22: 7.1147 REMARK 3 L33: 3.0291 L12: 1.4209 REMARK 3 L13: -0.1081 L23: 1.2612 REMARK 3 S TENSOR REMARK 3 S11: 0.3745 S12: -0.3158 S13: -0.4376 REMARK 3 S21: 0.6014 S22: -0.2899 S23: -1.0894 REMARK 3 S31: 0.1184 S32: 0.2876 S33: -0.0889 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 315 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9303 61.5653 12.0269 REMARK 3 T TENSOR REMARK 3 T11: 0.7860 T22: 0.6764 REMARK 3 T33: 0.4497 T12: -0.4369 REMARK 3 T13: -0.0033 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 7.2552 L22: 3.8462 REMARK 3 L33: 3.2712 L12: 1.1847 REMARK 3 L13: -0.9797 L23: -1.6922 REMARK 3 S TENSOR REMARK 3 S11: 0.8750 S12: -1.3844 S13: 0.6042 REMARK 3 S21: 1.4079 S22: -0.6310 S23: -0.3337 REMARK 3 S31: -0.8858 S32: 0.2889 S33: -0.3865 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 335 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9163 70.5416 2.4545 REMARK 3 T TENSOR REMARK 3 T11: 0.3192 T22: 0.4326 REMARK 3 T33: 0.4267 T12: -0.2026 REMARK 3 T13: 0.0772 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 9.4833 L22: 6.4046 REMARK 3 L33: 4.3382 L12: -3.1985 REMARK 3 L13: -0.3937 L23: 0.4959 REMARK 3 S TENSOR REMARK 3 S11: 0.5910 S12: -0.3238 S13: 0.4733 REMARK 3 S21: 0.4940 S22: -0.4115 S23: 0.2879 REMARK 3 S31: -0.2258 S32: -0.5769 S33: -0.1798 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 355 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5121 62.6724 -10.3745 REMARK 3 T TENSOR REMARK 3 T11: 0.3635 T22: 0.3656 REMARK 3 T33: 0.3188 T12: -0.1446 REMARK 3 T13: 0.0125 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 3.2232 L22: 4.5514 REMARK 3 L33: 4.8754 L12: 0.3342 REMARK 3 L13: 1.6957 L23: 4.3962 REMARK 3 S TENSOR REMARK 3 S11: -0.2588 S12: 0.4306 S13: 0.2560 REMARK 3 S21: -0.2125 S22: -0.2652 S23: -0.0454 REMARK 3 S31: -0.5276 S32: -0.1265 S33: 0.4544 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 366 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0910 54.0024 -9.5388 REMARK 3 T TENSOR REMARK 3 T11: 0.2980 T22: 0.2944 REMARK 3 T33: 0.2639 T12: -0.1465 REMARK 3 T13: 0.0276 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 4.6946 L22: 4.0026 REMARK 3 L33: 3.2413 L12: 1.4181 REMARK 3 L13: 0.9380 L23: -0.7101 REMARK 3 S TENSOR REMARK 3 S11: -0.1810 S12: 0.2926 S13: 0.1937 REMARK 3 S21: -0.3393 S22: 0.1320 S23: -0.1179 REMARK 3 S31: -0.1942 S32: 0.0737 S33: 0.0699 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 407 THROUGH 425 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0026 41.5878 -13.4781 REMARK 3 T TENSOR REMARK 3 T11: 0.4119 T22: 0.3435 REMARK 3 T33: 0.4334 T12: -0.1061 REMARK 3 T13: 0.1260 T23: -0.1595 REMARK 3 L TENSOR REMARK 3 L11: 3.7030 L22: 5.3826 REMARK 3 L33: 6.4324 L12: -1.1091 REMARK 3 L13: 3.4163 L23: -1.8419 REMARK 3 S TENSOR REMARK 3 S11: 0.0756 S12: 0.4152 S13: -0.8178 REMARK 3 S21: -0.8928 S22: 0.2355 S23: -0.8016 REMARK 3 S31: 0.4994 S32: 0.0838 S33: -0.1990 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 1568 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292113768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35462 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 44.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.530 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3V34 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LICL, 20% PEG 6000 AND 0.1 M REMARK 280 HEPES PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.60100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.16550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.16550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.80050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.16550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.16550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.40150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.16550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.16550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.80050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.16550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.16550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.40150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.60100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 260 REMARK 465 ASP B 261 REMARK 465 ILE B 427 REMARK 465 VAL B 428 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 261 CG OD1 OD2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 ARG A 330 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 413 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 377 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 425 CG CD CE NZ REMARK 470 PRO B 426 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 295 O HOH A 601 2.07 REMARK 500 O HOH A 753 O HOH A 754 2.10 REMARK 500 O HOH B 644 O HOH B 688 2.10 REMARK 500 OD1 ASP B 356 O HOH B 601 2.14 REMARK 500 O HOH A 735 O HOH B 659 2.15 REMARK 500 O HOH A 619 O HOH A 621 2.15 REMARK 500 O HOH B 601 O HOH B 623 2.18 REMARK 500 O HOH A 619 O HOH A 622 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 426 C - N - CA ANGL. DEV. = 11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 321 66.11 -153.20 REMARK 500 ASN A 401 -117.68 50.71 REMARK 500 LYS B 282 3.30 -67.19 REMARK 500 ASN B 401 -117.41 51.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 753 DISTANCE = 10.23 ANGSTROMS REMARK 525 HOH A 754 DISTANCE = 10.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 276 O REMARK 620 2 MET B 277 O 84.3 REMARK 620 3 HIS B 279 O 79.3 102.7 REMARK 620 4 ASN B 281 O 172.3 100.4 105.3 REMARK 620 5 VAL B 284 O 80.2 120.0 129.9 92.2 REMARK 620 N 1 2 3 4 DBREF 7NDH A 260 428 UNP Q5DTV4 ZC12C_MOUSE 241 409 DBREF 7NDH B 260 428 UNP Q5DTV4 ZC12C_MOUSE 241 409 SEQRES 1 A 169 ASP ASP GLY GLU ASN LEU ARG PRO VAL VAL ILE ASP GLY SEQRES 2 A 169 SER ASN VAL ALA MET SER HIS GLY ASN LYS GLU VAL PHE SEQRES 3 A 169 SER CYS ARG GLY ILE LYS LEU ALA VAL ASP TRP PHE LEU SEQRES 4 A 169 GLU ARG GLY HIS LYS ASP ILE THR VAL PHE VAL PRO ALA SEQRES 5 A 169 TRP ARG LYS GLU GLN SER ARG PRO ASP ALA LEU ILE THR SEQRES 6 A 169 ASP GLN GLU ILE LEU ARG LYS LEU GLU LYS GLU LYS ILE SEQRES 7 A 169 LEU VAL PHE THR PRO SER ARG ARG VAL GLN GLY ARG ARG SEQRES 8 A 169 VAL VAL CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA SEQRES 9 A 169 PHE GLU SER ASP GLY ILE ILE VAL SER ASN ASP ASN TYR SEQRES 10 A 169 ARG ASP LEU ALA ASN GLU LYS PRO GLU TRP LYS LYS PHE SEQRES 11 A 169 ILE ASP GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP SEQRES 12 A 169 LYS PHE MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY SEQRES 13 A 169 PRO SER LEU ASP ASN PHE LEU ARG LYS LYS PRO ILE VAL SEQRES 1 B 169 ASP ASP GLY GLU ASN LEU ARG PRO VAL VAL ILE ASP GLY SEQRES 2 B 169 SER ASN VAL ALA MET SER HIS GLY ASN LYS GLU VAL PHE SEQRES 3 B 169 SER CYS ARG GLY ILE LYS LEU ALA VAL ASP TRP PHE LEU SEQRES 4 B 169 GLU ARG GLY HIS LYS ASP ILE THR VAL PHE VAL PRO ALA SEQRES 5 B 169 TRP ARG LYS GLU GLN SER ARG PRO ASP ALA LEU ILE THR SEQRES 6 B 169 ASP GLN GLU ILE LEU ARG LYS LEU GLU LYS GLU LYS ILE SEQRES 7 B 169 LEU VAL PHE THR PRO SER ARG ARG VAL GLN GLY ARG ARG SEQRES 8 B 169 VAL VAL CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA SEQRES 9 B 169 PHE GLU SER ASP GLY ILE ILE VAL SER ASN ASP ASN TYR SEQRES 10 B 169 ARG ASP LEU ALA ASN GLU LYS PRO GLU TRP LYS LYS PHE SEQRES 11 B 169 ILE ASP GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP SEQRES 12 B 169 LYS PHE MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY SEQRES 13 B 169 PRO SER LEU ASP ASN PHE LEU ARG LYS LYS PRO ILE VAL HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET NA B 501 1 HET EDO B 502 4 HET EDO B 503 4 HET EDO B 504 4 HET EDO B 505 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 8(C2 H6 O2) FORMUL 7 NA NA 1+ FORMUL 12 HOH *260(H2 O) HELIX 1 AA1 GLY A 272 GLY A 280 1 9 HELIX 2 AA2 CYS A 287 ARG A 300 1 14 HELIX 3 AA3 TRP A 312 GLU A 315 5 4 HELIX 4 AA4 ARG A 318 ALA A 321 5 4 HELIX 5 AA5 GLN A 326 GLU A 335 1 10 HELIX 6 AA6 TYR A 354 SER A 366 1 13 HELIX 7 AA7 TYR A 376 LYS A 383 1 8 HELIX 8 AA8 LYS A 383 ARG A 393 1 11 HELIX 9 AA9 SER A 417 LEU A 422 1 6 HELIX 10 AB1 GLY B 272 HIS B 279 1 8 HELIX 11 AB2 CYS B 287 ARG B 300 1 14 HELIX 12 AB3 TRP B 312 GLU B 315 5 4 HELIX 13 AB4 GLN B 326 GLU B 335 1 10 HELIX 14 AB5 TYR B 354 SER B 366 1 13 HELIX 15 AB6 TYR B 376 LYS B 383 1 8 HELIX 16 AB7 LYS B 383 ARG B 393 1 11 HELIX 17 AB8 SER B 417 LEU B 422 1 6 SHEET 1 AA1 5 LEU A 338 THR A 341 0 SHEET 2 AA1 5 ILE A 305 PRO A 310 1 N VAL A 307 O VAL A 339 SHEET 3 AA1 5 VAL A 268 ASP A 271 1 N ILE A 270 O THR A 306 SHEET 4 AA1 5 ILE A 369 VAL A 371 1 O VAL A 371 N ASP A 271 SHEET 5 AA1 5 LEU A 394 LEU A 395 1 O LEU A 395 N ILE A 370 SHEET 1 AA2 2 PHE A 285 SER A 286 0 SHEET 2 AA2 2 ILE A 323 THR A 324 1 O THR A 324 N PHE A 285 SHEET 1 AA3 2 SER A 343 VAL A 346 0 SHEET 2 AA3 2 ARG A 349 VAL A 352 -1 O VAL A 351 N ARG A 344 SHEET 1 AA4 2 SER A 398 VAL A 400 0 SHEET 2 AA4 2 LYS A 403 MET A 405 -1 O MET A 405 N SER A 398 SHEET 1 AA5 5 LEU B 338 THR B 341 0 SHEET 2 AA5 5 ILE B 305 PRO B 310 1 N VAL B 307 O VAL B 339 SHEET 3 AA5 5 VAL B 268 ASP B 271 1 N ILE B 270 O THR B 306 SHEET 4 AA5 5 ILE B 369 VAL B 371 1 O VAL B 371 N ASP B 271 SHEET 5 AA5 5 LEU B 394 LEU B 395 1 O LEU B 395 N ILE B 370 SHEET 1 AA6 2 PHE B 285 SER B 286 0 SHEET 2 AA6 2 ILE B 323 THR B 324 1 O THR B 324 N PHE B 285 SHEET 1 AA7 2 SER B 343 VAL B 346 0 SHEET 2 AA7 2 ARG B 349 VAL B 352 -1 O VAL B 351 N ARG B 344 SHEET 1 AA8 2 SER B 398 VAL B 400 0 SHEET 2 AA8 2 LYS B 403 MET B 405 -1 O MET B 405 N SER B 398 LINK O ALA B 276 NA NA B 501 1555 1555 2.80 LINK O MET B 277 NA NA B 501 1555 1555 2.40 LINK O HIS B 279 NA NA B 501 1555 1555 2.25 LINK O ASN B 281 NA NA B 501 1555 1555 2.34 LINK O VAL B 284 NA NA B 501 1555 1555 2.35 CRYST1 80.331 80.331 143.202 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012448 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006983 0.00000