HEADER RNA BINDING PROTEIN 01-FEB-21 7NDK TITLE CRYSTAL STRUCTURE OF ZC3H12C PIN CATALYTIC MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RIBONUCLEASE ZC3H12C; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12C; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ZC3H12C, KIAA1726; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDO-RIBONUCLEASE, REGNASE, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.GARG,U.HEINEMANN REVDAT 3 31-JAN-24 7NDK 1 REMARK REVDAT 2 02-JUN-21 7NDK 1 JRNL REVDAT 1 19-MAY-21 7NDK 0 JRNL AUTH A.GARG,Y.ROSKE,S.YAMADA,T.UEHATA,O.TAKEUCHI,U.HEINEMANN JRNL TITL PIN AND CCCH ZN-FINGER DOMAINS COORDINATE RNA TARGETING IN JRNL TITL 2 ZC3H12 FAMILY ENDORIBONUCLEASES. JRNL REF NUCLEIC ACIDS RES. V. 49 5369 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33950203 JRNL DOI 10.1093/NAR/GKAB316 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 20656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1082 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1470 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5130 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 35.81000 REMARK 3 B22 (A**2) : 22.95000 REMARK 3 B33 (A**2) : -58.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.299 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5241 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4994 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7057 ; 1.269 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11550 ; 0.938 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 612 ; 7.106 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 267 ;34.344 ;23.258 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 964 ;16.761 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;15.114 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 756 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5702 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1130 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.521 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.479 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292113773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21746 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 38.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.250 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7NDI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M KSCN, 20% PEG 3350 AND 0.1 M BIS REMARK 280 -TRIS PROPANE PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.73750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 317 REMARK 465 SER A 318 REMARK 465 ARG A 319 REMARK 465 PRO A 320 REMARK 465 ASP A 321 REMARK 465 ALA A 322 REMARK 465 GLN A 348 REMARK 465 GLY A 349 REMARK 465 ARG A 350 REMARK 465 ASP B 261 REMARK 465 GLY B 262 REMARK 465 SER B 318 REMARK 465 ARG B 319 REMARK 465 PRO B 320 REMARK 465 ASP B 321 REMARK 465 ALA B 322 REMARK 465 VAL B 347 REMARK 465 GLN B 348 REMARK 465 GLY B 349 REMARK 465 ARG B 350 REMARK 465 ASP C 261 REMARK 465 GLY C 262 REMARK 465 GLU C 263 REMARK 465 ASN C 264 REMARK 465 ALA C 321 REMARK 465 GLN C 347 REMARK 465 GLY C 348 REMARK 465 ARG C 349 REMARK 465 ASP D 261 REMARK 465 GLY D 262 REMARK 465 GLY D 348 REMARK 465 ARG D 349 REMARK 465 ARG D 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN C 281 CG OD1 ND2 REMARK 470 LEU C 411 CG CD1 CD2 REMARK 470 GLU D 263 CG CD OE1 OE2 REMARK 470 ARG D 330 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 288 -32.97 -38.97 REMARK 500 ARG A 345 -149.79 -162.57 REMARK 500 ASP A 368 35.66 70.90 REMARK 500 ASN A 402 -119.56 56.64 REMARK 500 SER A 418 -167.85 -77.60 REMARK 500 SER B 373 135.04 -170.39 REMARK 500 ASN B 402 -99.42 50.32 REMARK 500 LEU B 412 72.98 -116.88 REMARK 500 PHE C 285 90.04 -69.56 REMARK 500 ASP C 325 40.00 74.93 REMARK 500 ASN C 401 -136.67 44.39 REMARK 500 ASP C 402 54.21 -106.47 REMARK 500 HIS C 414 49.57 -88.21 REMARK 500 ASP C 419 -69.06 65.20 REMARK 500 ASN D 264 -88.18 -99.51 REMARK 500 GLU D 315 173.08 -58.69 REMARK 500 ALA D 321 -167.43 63.76 REMARK 500 GLU D 327 -37.67 -31.91 REMARK 500 LEU D 332 -55.53 59.90 REMARK 500 TYR D 354 95.94 -56.35 REMARK 500 ASN D 401 -107.41 67.48 REMARK 500 PHE D 404 99.84 -62.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 276 O REMARK 620 2 MET B 277 O 80.6 REMARK 620 3 HIS B 279 O 84.2 110.3 REMARK 620 4 ASN B 281 O 167.3 88.3 105.5 REMARK 620 5 VAL B 284 O 89.2 106.1 141.3 88.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA D 276 O REMARK 620 2 MET D 277 O 86.4 REMARK 620 3 HIS D 279 O 75.7 109.1 REMARK 620 4 ASN D 281 O 169.6 83.3 106.6 REMARK 620 5 VAL D 284 O 73.5 113.6 124.5 111.9 REMARK 620 N 1 2 3 4 DBREF 7NDK A 261 425 UNP Q5DTV4 ZC12C_MOUSE 242 405 DBREF 7NDK B 261 425 UNP Q5DTV4 ZC12C_MOUSE 242 405 DBREF 7NDK C 261 424 UNP Q5DTV4 ZC12C_MOUSE 242 405 DBREF 7NDK D 261 424 UNP Q5DTV4 ZC12C_MOUSE 242 405 SEQADV 7NDK ASN A 271 UNP Q5DTV4 ASP 252 CONFLICT SEQADV 7NDK ASN B 271 UNP Q5DTV4 ASP 252 CONFLICT SEQADV 7NDK ASN C 271 UNP Q5DTV4 ASP 252 CONFLICT SEQADV 7NDK ASN D 271 UNP Q5DTV4 ASP 252 CONFLICT SEQRES 1 A 164 ASP GLY GLU ASN LEU ARG PRO VAL VAL ILE ASN GLY SER SEQRES 2 A 164 ASN VAL ALA MET SER HIS GLY ASN LYS GLU VAL PHE SER SEQRES 3 A 164 CYS ARG GLY ILE LYS LEU ALA VAL ASP TRP PHE LEU GLU SEQRES 4 A 164 ARG GLY HIS LYS ASP ILE THR VAL PHE VAL PRO ALA TRP SEQRES 5 A 164 ARG LYS GLU GLN SER ARG PRO ASP ALA LEU ILE THR ASP SEQRES 6 A 164 GLN GLU ILE LEU ARG LYS LEU GLU LYS GLU LYS ILE LEU SEQRES 7 A 164 VAL PHE THR PRO SER ARG ARG VAL GLN GLY ARG ARG VAL SEQRES 8 A 164 VAL CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA PHE SEQRES 9 A 164 GLU SER ASP GLY ILE ILE VAL SER ASN ASP ASN TYR ARG SEQRES 10 A 164 ASP LEU ALA ASN GLU LYS PRO GLU TRP LYS LYS PHE ILE SEQRES 11 A 164 ASP GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP LYS SEQRES 12 A 164 PHE MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY PRO SEQRES 13 A 164 SER LEU ASP ASN PHE LEU ARG LYS SEQRES 1 B 164 ASP GLY GLU ASN LEU ARG PRO VAL VAL ILE ASN GLY SER SEQRES 2 B 164 ASN VAL ALA MET SER HIS GLY ASN LYS GLU VAL PHE SER SEQRES 3 B 164 CYS ARG GLY ILE LYS LEU ALA VAL ASP TRP PHE LEU GLU SEQRES 4 B 164 ARG GLY HIS LYS ASP ILE THR VAL PHE VAL PRO ALA TRP SEQRES 5 B 164 ARG LYS GLU GLN SER ARG PRO ASP ALA LEU ILE THR ASP SEQRES 6 B 164 GLN GLU ILE LEU ARG LYS LEU GLU LYS GLU LYS ILE LEU SEQRES 7 B 164 VAL PHE THR PRO SER ARG ARG VAL GLN GLY ARG ARG VAL SEQRES 8 B 164 VAL CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA PHE SEQRES 9 B 164 GLU SER ASP GLY ILE ILE VAL SER ASN ASP ASN TYR ARG SEQRES 10 B 164 ASP LEU ALA ASN GLU LYS PRO GLU TRP LYS LYS PHE ILE SEQRES 11 B 164 ASP GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP LYS SEQRES 12 B 164 PHE MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY PRO SEQRES 13 B 164 SER LEU ASP ASN PHE LEU ARG LYS SEQRES 1 C 164 ASP GLY GLU ASN LEU ARG PRO VAL VAL ILE ASN GLY SER SEQRES 2 C 164 ASN VAL ALA MET SER HIS GLY ASN LYS GLU VAL PHE SER SEQRES 3 C 164 CYS ARG GLY ILE LYS LEU ALA VAL ASP TRP PHE LEU GLU SEQRES 4 C 164 ARG GLY HIS LYS ASP ILE THR VAL PHE VAL PRO ALA TRP SEQRES 5 C 164 ARG LYS GLU GLN SER ARG PRO ASP ALA LEU ILE THR ASP SEQRES 6 C 164 GLN GLU ILE LEU ARG LYS LEU GLU LYS GLU LYS ILE LEU SEQRES 7 C 164 VAL PHE THR PRO SER ARG ARG VAL GLN GLY ARG ARG VAL SEQRES 8 C 164 VAL CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA PHE SEQRES 9 C 164 GLU SER ASP GLY ILE ILE VAL SER ASN ASP ASN TYR ARG SEQRES 10 C 164 ASP LEU ALA ASN GLU LYS PRO GLU TRP LYS LYS PHE ILE SEQRES 11 C 164 ASP GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP LYS SEQRES 12 C 164 PHE MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY PRO SEQRES 13 C 164 SER LEU ASP ASN PHE LEU ARG LYS SEQRES 1 D 164 ASP GLY GLU ASN LEU ARG PRO VAL VAL ILE ASN GLY SER SEQRES 2 D 164 ASN VAL ALA MET SER HIS GLY ASN LYS GLU VAL PHE SER SEQRES 3 D 164 CYS ARG GLY ILE LYS LEU ALA VAL ASP TRP PHE LEU GLU SEQRES 4 D 164 ARG GLY HIS LYS ASP ILE THR VAL PHE VAL PRO ALA TRP SEQRES 5 D 164 ARG LYS GLU GLN SER ARG PRO ASP ALA LEU ILE THR ASP SEQRES 6 D 164 GLN GLU ILE LEU ARG LYS LEU GLU LYS GLU LYS ILE LEU SEQRES 7 D 164 VAL PHE THR PRO SER ARG ARG VAL GLN GLY ARG ARG VAL SEQRES 8 D 164 VAL CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA PHE SEQRES 9 D 164 GLU SER ASP GLY ILE ILE VAL SER ASN ASP ASN TYR ARG SEQRES 10 D 164 ASP LEU ALA ASN GLU LYS PRO GLU TRP LYS LYS PHE ILE SEQRES 11 D 164 ASP GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP LYS SEQRES 12 D 164 PHE MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY PRO SEQRES 13 D 164 SER LEU ASP ASN PHE LEU ARG LYS HET NA B 501 1 HET NA D 501 1 HETNAM NA SODIUM ION FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *94(H2 O) HELIX 1 AA1 GLY A 272 HIS A 279 1 8 HELIX 2 AA2 ARG A 288 GLY A 301 1 14 HELIX 3 AA3 TRP A 312 LYS A 314 5 3 HELIX 4 AA4 GLU A 328 GLU A 336 1 9 HELIX 5 AA5 TYR A 355 ASP A 368 1 14 HELIX 6 AA6 TYR A 377 LYS A 384 1 8 HELIX 7 AA7 LYS A 384 ARG A 394 1 11 HELIX 8 AA8 SER A 418 ARG A 424 1 7 HELIX 9 AA9 GLY B 272 HIS B 279 1 8 HELIX 10 AB1 CYS B 287 GLY B 301 1 15 HELIX 11 AB2 TRP B 312 GLU B 315 5 4 HELIX 12 AB3 GLN B 327 GLU B 336 1 10 HELIX 13 AB4 TYR B 355 ASP B 368 1 14 HELIX 14 AB5 TYR B 377 ASN B 382 1 6 HELIX 15 AB6 LYS B 384 ARG B 394 1 11 HELIX 16 AB7 SER B 418 LEU B 423 1 6 HELIX 17 AB8 GLY C 272 HIS C 279 1 8 HELIX 18 AB9 CYS C 287 GLY C 301 1 15 HELIX 19 AC1 TRP C 312 LYS C 314 5 3 HELIX 20 AC2 GLN C 326 GLU C 333 1 8 HELIX 21 AC3 ASP C 355 ASP C 367 1 13 HELIX 22 AC4 TYR C 376 ASN C 381 1 6 HELIX 23 AC5 LYS C 383 ARG C 393 1 11 HELIX 24 AC6 ASP C 419 LYS C 424 1 6 HELIX 25 AC7 GLY D 272 HIS D 279 1 8 HELIX 26 AC8 CYS D 287 GLY D 301 1 15 HELIX 27 AC9 TRP D 312 GLU D 315 5 4 HELIX 28 AD1 GLN D 326 LYS D 334 1 9 HELIX 29 AD2 TYR D 354 SER D 366 1 13 HELIX 30 AD3 TYR D 376 ASN D 381 1 6 HELIX 31 AD4 LYS D 383 ARG D 393 1 11 HELIX 32 AD5 SER D 417 ARG D 423 1 7 SHEET 1 AA1 5 LEU A 339 THR A 342 0 SHEET 2 AA1 5 ILE A 305 PRO A 310 1 N VAL A 309 O THR A 342 SHEET 3 AA1 5 VAL A 268 ASN A 271 1 N ILE A 270 O THR A 306 SHEET 4 AA1 5 ILE A 370 VAL A 372 1 O VAL A 372 N VAL A 269 SHEET 5 AA1 5 LEU A 395 LEU A 396 1 O LEU A 396 N ILE A 371 SHEET 1 AA2 2 PHE A 285 SER A 286 0 SHEET 2 AA2 2 ILE A 324 THR A 325 1 O THR A 325 N PHE A 285 SHEET 1 AA3 2 SER A 344 ARG A 345 0 SHEET 2 AA3 2 VAL A 352 VAL A 353 -1 O VAL A 352 N ARG A 345 SHEET 1 AA4 2 SER A 399 VAL A 401 0 SHEET 2 AA4 2 LYS A 404 MET A 406 -1 O MET A 406 N SER A 399 SHEET 1 AA5 5 LEU B 339 THR B 342 0 SHEET 2 AA5 5 ILE B 305 PRO B 310 1 N VAL B 307 O VAL B 340 SHEET 3 AA5 5 VAL B 268 ASN B 271 1 N VAL B 268 O THR B 306 SHEET 4 AA5 5 ILE B 370 VAL B 372 1 O ILE B 370 N VAL B 269 SHEET 5 AA5 5 LEU B 395 LEU B 396 1 O LEU B 396 N ILE B 371 SHEET 1 AA6 2 PHE B 285 SER B 286 0 SHEET 2 AA6 2 ILE B 324 THR B 325 1 O THR B 325 N PHE B 285 SHEET 1 AA7 2 SER B 344 ARG B 345 0 SHEET 2 AA7 2 VAL B 352 VAL B 353 -1 O VAL B 352 N ARG B 345 SHEET 1 AA8 2 SER B 399 VAL B 401 0 SHEET 2 AA8 2 LYS B 404 MET B 406 -1 O LYS B 404 N VAL B 401 SHEET 1 AA9 5 LEU C 338 THR C 341 0 SHEET 2 AA9 5 ILE C 305 PRO C 310 1 N VAL C 307 O VAL C 339 SHEET 3 AA9 5 VAL C 268 ASN C 271 1 N ILE C 270 O THR C 306 SHEET 4 AA9 5 ILE C 369 VAL C 371 1 O VAL C 371 N VAL C 269 SHEET 5 AA9 5 LEU C 394 LEU C 395 1 O LEU C 395 N ILE C 370 SHEET 1 AB1 2 PHE C 285 SER C 286 0 SHEET 2 AB1 2 ILE C 323 THR C 324 1 O THR C 324 N PHE C 285 SHEET 1 AB2 2 SER C 343 ARG C 344 0 SHEET 2 AB2 2 VAL C 351 VAL C 352 -1 O VAL C 351 N ARG C 344 SHEET 1 AB3 2 SER C 398 VAL C 400 0 SHEET 2 AB3 2 LYS C 403 MET C 405 -1 O MET C 405 N SER C 398 SHEET 1 AB4 5 LEU D 338 THR D 341 0 SHEET 2 AB4 5 ILE D 305 PRO D 310 1 N VAL D 307 O VAL D 339 SHEET 3 AB4 5 VAL D 268 ASN D 271 1 N ILE D 270 O THR D 306 SHEET 4 AB4 5 ILE D 369 VAL D 371 1 O ILE D 369 N VAL D 269 SHEET 5 AB4 5 LEU D 394 LEU D 395 1 O LEU D 395 N ILE D 370 SHEET 1 AB5 2 SER D 398 VAL D 400 0 SHEET 2 AB5 2 LYS D 403 MET D 405 -1 O MET D 405 N SER D 398 LINK O ALA B 276 NA NA B 501 1555 1555 2.87 LINK O MET B 277 NA NA B 501 1555 1555 2.87 LINK O HIS B 279 NA NA B 501 1555 1555 2.52 LINK O ASN B 281 NA NA B 501 1555 1555 2.23 LINK O VAL B 284 NA NA B 501 1555 1555 2.25 LINK O ALA D 276 NA NA D 501 1555 1555 2.74 LINK O MET D 277 NA NA D 501 1555 1555 2.63 LINK O HIS D 279 NA NA D 501 1555 1555 2.39 LINK O ASN D 281 NA NA D 501 1555 1555 2.17 LINK O VAL D 284 NA NA D 501 1555 1555 2.27 CRYST1 38.753 61.475 111.620 90.00 90.06 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025804 0.000000 0.000026 0.00000 SCALE2 0.000000 0.016267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008959 0.00000