data_7NEJ
# 
_entry.id   7NEJ 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.392 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   7NEJ         pdb_00007nej 10.2210/pdb7nej/pdb 
WWPDB D_1292113818 ?            ?                   
BMRB  34599        ?            10.13018/BMR34599   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2021-04-07 
2 'Structure model' 1 1 2024-05-15 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Data collection'     
2 2 'Structure model' 'Database references' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 2 'Structure model' chem_comp_atom 
2 2 'Structure model' chem_comp_bond 
3 2 'Structure model' database_2     
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 2 'Structure model' '_database_2.pdbx_DOI'                
2 2 'Structure model' '_database_2.pdbx_database_accession' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_mr                  REL 
_pdbx_database_status.entry_id                        7NEJ 
_pdbx_database_status.recvd_initial_deposition_date   2021-02-04 
_pdbx_database_status.SG_entry                        N 
_pdbx_database_status.deposit_site                    PDBE 
_pdbx_database_status.process_site                    PDBE 
_pdbx_database_status.status_code_cs                  REL 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
# 
loop_
_pdbx_database_related.db_name 
_pdbx_database_related.details 
_pdbx_database_related.db_id 
_pdbx_database_related.content_type 
PDB  .                                             7NBL  unspecified 
BMRB 'Solution structure of DNA:RNA hybrid duplex' 34599 unspecified 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
_audit_author.identifier_ORCID 
'Cabrero, C.'        1 ? 
'Martin-Pintado, N.' 2 ? 
'Mazzini, S.'        3 ? 
'Gargallo, R.'       4 ? 
'Eritja, R.'         5 ? 
'Avino, A.'          6 ? 
'Gonzalez, C.'       7 ? 
# 
_citation.abstract                  ? 
_citation.abstract_id_CAS           ? 
_citation.book_id_ISBN              ? 
_citation.book_publisher            ? 
_citation.book_publisher_city       ? 
_citation.book_title                ? 
_citation.coordinate_linkage        ? 
_citation.country                   GE 
_citation.database_id_Medline       ? 
_citation.details                   ? 
_citation.id                        primary 
_citation.journal_abbrev            Chemistry 
_citation.journal_id_ASTM           ? 
_citation.journal_id_CSD            ? 
_citation.journal_id_ISSN           0947-6539 
_citation.journal_full              ? 
_citation.journal_issue             ? 
_citation.journal_volume            ? 
_citation.language                  ? 
_citation.page_first                ? 
_citation.page_last                 ? 
_citation.title                     
'Structural Effects of Incorporation of 2 -Deoxy-2 2 -difluorodeoxycytidine (Gemcitabine) in A- and B-form Duplexes.' 
_citation.year                      2021 
_citation.database_id_CSD           ? 
_citation.pdbx_database_id_DOI      10.1002/chem.202100503 
_citation.pdbx_database_id_PubMed   33772916 
_citation.unpublished_flag          ? 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Cabrero, C.'        1 ? 
primary 'Martin-Pintado, N.' 2 ? 
primary 'Mazzini, S.'        3 ? 
primary 'Gargallo, R.'       4 ? 
primary 'Eritja, R.'         5 ? 
primary 'Avino, A.'          6 ? 
primary 'Gonzalez, C.'       7 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 
;DNA (5'-D(*CP*TP*AP*CP*AP*CP*GP*G)-3')
;
2411.606 1 ? ? ? ? 
2 polymer syn 
;RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3')
;
2542.561 1 ? ? ? ? 
# 
loop_
_entity_poly.entity_id 
_entity_poly.type 
_entity_poly.nstd_linkage 
_entity_poly.nstd_monomer 
_entity_poly.pdbx_seq_one_letter_code 
_entity_poly.pdbx_seq_one_letter_code_can 
_entity_poly.pdbx_strand_id 
_entity_poly.pdbx_target_identifier 
1 polydeoxyribonucleotide no no '(DC)(DT)(DA)(DC)(DA)(DC)(DG)(DG)' CTACACGG A ? 
2 polyribonucleotide      no no CCGUGUAG                           CCGUGUAG B ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 DC n 
1 2 DT n 
1 3 DA n 
1 4 DC n 
1 5 DA n 
1 6 DC n 
1 7 DG n 
1 8 DG n 
2 1 C  n 
2 2 C  n 
2 3 G  n 
2 4 U  n 
2 5 G  n 
2 6 U  n 
2 7 A  n 
2 8 G  n 
# 
loop_
_pdbx_entity_src_syn.entity_id 
_pdbx_entity_src_syn.pdbx_src_id 
_pdbx_entity_src_syn.pdbx_alt_source_flag 
_pdbx_entity_src_syn.pdbx_beg_seq_num 
_pdbx_entity_src_syn.pdbx_end_seq_num 
_pdbx_entity_src_syn.organism_scientific 
_pdbx_entity_src_syn.organism_common_name 
_pdbx_entity_src_syn.ncbi_taxonomy_id 
_pdbx_entity_src_syn.details 
1 1 sample 1 8 'synthetic construct' ? 32630 ? 
2 1 sample 1 8 'synthetic construct' ? 32630 ? 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A  'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE"         ? 'C10 H14 N5 O7 P' 347.221 
C  'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"          ? 'C9 H14 N3 O8 P'  323.197 
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
G  'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE"         ? 'C10 H14 N5 O8 P' 363.221 
U  'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"           ? 'C9 H13 N2 O9 P'  324.181 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 DC 1 1  1  DC DC A . n 
A 1 2 DT 2 2  2  DT DT A . n 
A 1 3 DA 3 3  3  DA DA A . n 
A 1 4 DC 4 4  4  DC DC A . n 
A 1 5 DA 5 5  5  DA DA A . n 
A 1 6 DC 6 6  6  DC DC A . n 
A 1 7 DG 7 7  7  DG DG A . n 
A 1 8 DG 8 8  8  DG DG A . n 
B 2 1 C  1 9  9  C  C  B . n 
B 2 2 C  2 10 10 C  C  B . n 
B 2 3 G  3 11 11 G  G  B . n 
B 2 4 U  4 12 12 U  U  B . n 
B 2 5 G  5 13 13 G  G  B . n 
B 2 6 U  6 14 14 U  U  B . n 
B 2 7 A  7 15 15 A  A  B . n 
B 2 8 G  8 16 16 G  G  B . n 
# 
_exptl.absorpt_coefficient_mu     ? 
_exptl.absorpt_correction_T_max   ? 
_exptl.absorpt_correction_T_min   ? 
_exptl.absorpt_correction_type    ? 
_exptl.absorpt_process_details    ? 
_exptl.entry_id                   7NEJ 
_exptl.crystals_number            ? 
_exptl.details                    ? 
_exptl.method                     'SOLUTION NMR' 
_exptl.method_details             ? 
# 
_struct.entry_id                     7NEJ 
_struct.title                        'Solution structure of DNA:RNA hybrid duplex' 
_struct.pdbx_model_details           ? 
_struct.pdbx_formula_weight          ? 
_struct.pdbx_formula_weight_method   ? 
_struct.pdbx_model_type_details      ? 
_struct.pdbx_CASP_flag               N 
# 
_struct_keywords.entry_id        7NEJ 
_struct_keywords.text            'Fluorine modification, modified DNA, gemcitabine, DNA-RNA HYBRID' 
_struct_keywords.pdbx_keywords   'DNA-RNA HYBRID' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
# 
loop_
_struct_ref.id 
_struct_ref.db_name 
_struct_ref.db_code 
_struct_ref.pdbx_db_accession 
_struct_ref.pdbx_db_isoform 
_struct_ref.entity_id 
_struct_ref.pdbx_seq_one_letter_code 
_struct_ref.pdbx_align_begin 
1 PDB 7NEJ 7NEJ ? 1 ? 1 
2 PDB 7NEJ 7NEJ ? 2 ? 1 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 7NEJ A 1 ? 8 ? 7NEJ 1 ? 8  ? 1 8  
2 2 7NEJ B 1 ? 8 ? 7NEJ 9 ? 16 ? 9 16 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_and_software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 790  ? 
1 MORE         -3   ? 
1 'SSA (A^2)'  3220 ? 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B 
# 
_pdbx_struct_assembly_auth_evidence.id                     1 
_pdbx_struct_assembly_auth_evidence.assembly_id            1 
_pdbx_struct_assembly_auth_evidence.experimental_support   none 
_pdbx_struct_assembly_auth_evidence.details                ? 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   ? 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A DC 1 N3 ? ? ? 1_555 B G 8 N1 ? ? A DC 1 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A DC 1 N4 ? ? ? 1_555 B G 8 O6 ? ? A DC 1 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A DC 1 O2 ? ? ? 1_555 B G 8 N2 ? ? A DC 1 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A DT 2 N3 ? ? ? 1_555 B A 7 N1 ? ? A DT 2 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog5  hydrog ? ? A DT 2 O4 ? ? ? 1_555 B A 7 N6 ? ? A DT 2 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog6  hydrog ? ? A DA 3 N1 ? ? ? 1_555 B U 6 N3 ? ? A DA 3 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A DA 3 N6 ? ? ? 1_555 B U 6 O4 ? ? A DA 3 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A DC 4 N3 ? ? ? 1_555 B G 5 N1 ? ? A DC 4 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A DC 4 N4 ? ? ? 1_555 B G 5 O6 ? ? A DC 4 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B G 5 N2 ? ? A DC 4 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B U 4 N3 ? ? A DA 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B U 4 O4 ? ? A DA 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B G 3 N1 ? ? A DC 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B G 3 O6 ? ? A DC 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B G 3 N2 ? ? A DC 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B C 2 N3 ? ? A DG 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B C 2 O2 ? ? A DG 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B C 2 N4 ? ? A DG 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B C 1 N3 ? ? A DG 8 B C 9  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B C 1 O2 ? ? A DG 8 B C 9  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog21 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B C 1 N4 ? ? A DG 8 B C 9  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1  "O4'" A DC 1  ? ? "C4'" A DC 1  ? ? "C3'" A DC 1  ? ? 109.63 106.00 3.63  0.60 N 
2  1  "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 111.57 108.30 3.27  0.30 N 
3  1  N3    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 113.14 118.00 -4.86 0.70 N 
4  1  C5    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 125.02 120.20 4.82  0.70 N 
5  1  "O4'" A DC 4  ? ? "C1'" A DC 4  ? ? N1    A DC 4  ? ? 111.48 108.30 3.18  0.30 N 
6  1  N1    A DA 5  ? ? C6    A DA 5  ? ? N6    A DA 5  ? ? 114.33 118.60 -4.27 0.60 N 
7  1  "O4'" A DC 6  ? ? "C4'" A DC 6  ? ? "C3'" A DC 6  ? ? 110.13 106.00 4.13  0.60 N 
8  1  N3    B C  9  ? ? C2    B C  9  ? ? O2    B C  9  ? ? 117.46 121.90 -4.44 0.70 N 
9  1  "O4'" B U  12 ? ? "C1'" B U  12 ? ? N1    B U  12 ? ? 113.19 108.50 4.69  0.70 N 
10 2  "O4'" A DC 1  ? ? "C4'" A DC 1  ? ? "C3'" A DC 1  ? ? 110.28 106.00 4.28  0.60 N 
11 2  "C3'" A DC 1  ? ? "C2'" A DC 1  ? ? "C1'" A DC 1  ? ? 110.33 102.50 7.83  1.20 N 
12 2  "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 111.52 108.30 3.22  0.30 N 
13 2  N3    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 113.49 118.00 -4.51 0.70 N 
14 2  C5    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 124.71 120.20 4.51  0.70 N 
15 2  "O4'" A DC 4  ? ? "C1'" A DC 4  ? ? N1    A DC 4  ? ? 111.69 108.30 3.39  0.30 N 
16 2  C4    A DA 5  ? ? C5    A DA 5  ? ? C6    A DA 5  ? ? 113.92 117.00 -3.08 0.50 N 
17 2  N1    A DA 5  ? ? C6    A DA 5  ? ? N6    A DA 5  ? ? 114.93 118.60 -3.67 0.60 N 
18 2  "O4'" A DC 6  ? ? "C4'" A DC 6  ? ? "C3'" A DC 6  ? ? 109.81 106.00 3.81  0.60 N 
19 2  N3    B C  9  ? ? C2    B C  9  ? ? O2    B C  9  ? ? 117.59 121.90 -4.31 0.70 N 
20 2  "O4'" B C  10 ? ? "C1'" B C  10 ? ? N1    B C  10 ? ? 112.74 108.50 4.24  0.70 N 
21 2  "O4'" B U  12 ? ? "C1'" B U  12 ? ? N1    B U  12 ? ? 113.05 108.50 4.55  0.70 N 
22 2  "O4'" B U  14 ? ? "C1'" B U  14 ? ? N1    B U  14 ? ? 114.36 108.50 5.86  0.70 N 
23 3  "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 110.84 108.30 2.54  0.30 N 
24 3  N3    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 112.73 118.00 -5.27 0.70 N 
25 3  C5    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 125.01 120.20 4.81  0.70 N 
26 3  C6    A DT 2  ? ? C5    A DT 2  ? ? C7    A DT 2  ? ? 118.85 122.90 -4.05 0.60 N 
27 3  "O4'" A DC 4  ? ? "C1'" A DC 4  ? ? N1    A DC 4  ? ? 111.34 108.30 3.04  0.30 N 
28 3  C4    A DA 5  ? ? C5    A DA 5  ? ? C6    A DA 5  ? ? 113.81 117.00 -3.19 0.50 N 
29 3  N1    A DA 5  ? ? C6    A DA 5  ? ? N6    A DA 5  ? ? 113.66 118.60 -4.94 0.60 N 
30 3  "O4'" A DC 6  ? ? "C4'" A DC 6  ? ? "C3'" A DC 6  ? ? 109.95 106.00 3.95  0.60 N 
31 3  N3    B C  9  ? ? C2    B C  9  ? ? O2    B C  9  ? ? 117.35 121.90 -4.55 0.70 N 
32 3  "O4'" B C  10 ? ? "C1'" B C  10 ? ? N1    B C  10 ? ? 112.72 108.50 4.22  0.70 N 
33 3  "O4'" B U  12 ? ? "C1'" B U  12 ? ? N1    B U  12 ? ? 113.47 108.50 4.97  0.70 N 
34 4  "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 111.16 108.30 2.86  0.30 N 
35 4  N3    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 112.79 118.00 -5.21 0.70 N 
36 4  C5    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 125.38 120.20 5.18  0.70 N 
37 4  "O4'" A DC 4  ? ? "C1'" A DC 4  ? ? N1    A DC 4  ? ? 111.55 108.30 3.25  0.30 N 
38 4  C4    A DA 5  ? ? C5    A DA 5  ? ? C6    A DA 5  ? ? 113.86 117.00 -3.14 0.50 N 
39 4  N1    A DA 5  ? ? C6    A DA 5  ? ? N6    A DA 5  ? ? 114.85 118.60 -3.75 0.60 N 
40 4  N3    B C  9  ? ? C2    B C  9  ? ? O2    B C  9  ? ? 117.69 121.90 -4.21 0.70 N 
41 4  "O4'" B U  12 ? ? "C1'" B U  12 ? ? N1    B U  12 ? ? 113.03 108.50 4.53  0.70 N 
42 4  "O4'" B U  14 ? ? "C1'" B U  14 ? ? N1    B U  14 ? ? 113.11 108.50 4.61  0.70 N 
43 4  "O4'" B A  15 ? ? "C1'" B A  15 ? ? N9    B A  15 ? ? 113.09 108.50 4.59  0.70 N 
44 5  "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 111.81 108.30 3.51  0.30 N 
45 5  N3    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 112.84 118.00 -5.16 0.70 N 
46 5  C5    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 125.08 120.20 4.88  0.70 N 
47 5  "O4'" A DC 4  ? ? "C1'" A DC 4  ? ? N1    A DC 4  ? ? 111.06 108.30 2.76  0.30 N 
48 5  "O4'" A DA 5  ? ? "C4'" A DA 5  ? ? "C3'" A DA 5  ? ? 109.63 106.00 3.63  0.60 N 
49 5  N1    A DA 5  ? ? C6    A DA 5  ? ? N6    A DA 5  ? ? 114.54 118.60 -4.06 0.60 N 
50 5  N1    A DG 8  ? ? C6    A DG 8  ? ? O6    A DG 8  ? ? 116.28 119.90 -3.62 0.60 N 
51 5  "O4'" B C  10 ? ? "C1'" B C  10 ? ? N1    B C  10 ? ? 112.95 108.50 4.45  0.70 N 
52 5  "O4'" B U  12 ? ? "C1'" B U  12 ? ? N1    B U  12 ? ? 114.24 108.50 5.74  0.70 N 
53 5  "O4'" B U  14 ? ? "C1'" B U  14 ? ? N1    B U  14 ? ? 113.33 108.50 4.83  0.70 N 
54 6  "O4'" A DC 1  ? ? "C4'" A DC 1  ? ? "C3'" A DC 1  ? ? 111.14 106.00 5.14  0.60 N 
55 6  "C3'" A DC 1  ? ? "C2'" A DC 1  ? ? "C1'" A DC 1  ? ? 111.15 102.50 8.65  1.20 N 
56 6  "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 111.96 108.30 3.66  0.30 N 
57 6  N3    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 113.04 118.00 -4.96 0.70 N 
58 6  C5    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 125.10 120.20 4.90  0.70 N 
59 6  "O4'" A DT 2  ? ? "C4'" A DT 2  ? ? "C3'" A DT 2  ? ? 109.69 106.00 3.69  0.60 N 
60 6  "O4'" A DC 4  ? ? "C1'" A DC 4  ? ? N1    A DC 4  ? ? 111.24 108.30 2.94  0.30 N 
61 6  "O4'" A DC 6  ? ? "C4'" A DC 6  ? ? "C3'" A DC 6  ? ? 110.10 106.00 4.10  0.60 N 
62 6  N3    B C  9  ? ? C2    B C  9  ? ? O2    B C  9  ? ? 117.69 121.90 -4.21 0.70 N 
63 6  "O4'" B U  12 ? ? "C1'" B U  12 ? ? N1    B U  12 ? ? 112.96 108.50 4.46  0.70 N 
64 6  "O4'" B U  14 ? ? "C1'" B U  14 ? ? N1    B U  14 ? ? 113.38 108.50 4.88  0.70 N 
65 7  "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 111.41 108.30 3.11  0.30 N 
66 7  N3    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 113.16 118.00 -4.84 0.70 N 
67 7  C5    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 124.98 120.20 4.78  0.70 N 
68 7  "O4'" A DA 3  ? ? "C4'" A DA 3  ? ? "C3'" A DA 3  ? ? 109.78 106.00 3.78  0.60 N 
69 7  "O4'" A DC 4  ? ? "C1'" A DC 4  ? ? N1    A DC 4  ? ? 110.83 108.30 2.53  0.30 N 
70 7  C4    A DA 5  ? ? C5    A DA 5  ? ? C6    A DA 5  ? ? 113.95 117.00 -3.05 0.50 N 
71 7  C5    A DA 5  ? ? C6    A DA 5  ? ? N1    A DA 5  ? ? 120.78 117.70 3.08  0.50 N 
72 7  N3    B C  9  ? ? C2    B C  9  ? ? O2    B C  9  ? ? 117.37 121.90 -4.53 0.70 N 
73 7  "O4'" B U  14 ? ? "C1'" B U  14 ? ? N1    B U  14 ? ? 113.95 108.50 5.45  0.70 N 
74 8  "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 111.27 108.30 2.97  0.30 N 
75 8  N3    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 113.30 118.00 -4.70 0.70 N 
76 8  C5    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 124.83 120.20 4.63  0.70 N 
77 8  "O4'" A DA 3  ? ? "C4'" A DA 3  ? ? "C3'" A DA 3  ? ? 109.62 106.00 3.62  0.60 N 
78 8  "O4'" A DC 4  ? ? "C1'" A DC 4  ? ? N1    A DC 4  ? ? 111.01 108.30 2.71  0.30 N 
79 8  C4    A DA 5  ? ? C5    A DA 5  ? ? C6    A DA 5  ? ? 113.92 117.00 -3.08 0.50 N 
80 8  "O4'" B C  10 ? ? "C1'" B C  10 ? ? N1    B C  10 ? ? 113.62 108.50 5.12  0.70 N 
81 8  "O4'" B G  11 ? ? "C1'" B G  11 ? ? N9    B G  11 ? ? 113.64 108.50 5.14  0.70 N 
82 8  "O4'" B U  14 ? ? "C1'" B U  14 ? ? N1    B U  14 ? ? 113.84 108.50 5.34  0.70 N 
83 9  "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 111.18 108.30 2.88  0.30 N 
84 9  N3    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 113.39 118.00 -4.61 0.70 N 
85 9  C5    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 124.79 120.20 4.59  0.70 N 
86 9  "O4'" A DT 2  ? ? "C1'" A DT 2  ? ? N1    A DT 2  ? ? 110.11 108.30 1.81  0.30 N 
87 9  "O4'" A DC 4  ? ? "C1'" A DC 4  ? ? N1    A DC 4  ? ? 111.32 108.30 3.02  0.30 N 
88 9  N3    B C  9  ? ? C2    B C  9  ? ? O2    B C  9  ? ? 117.38 121.90 -4.52 0.70 N 
89 9  "O4'" B G  11 ? ? "C1'" B G  11 ? ? N9    B G  11 ? ? 113.23 108.50 4.73  0.70 N 
90 9  "O4'" B U  12 ? ? "C1'" B U  12 ? ? N1    B U  12 ? ? 113.95 108.50 5.45  0.70 N 
91 9  "O4'" B U  14 ? ? "C1'" B U  14 ? ? N1    B U  14 ? ? 113.05 108.50 4.55  0.70 N 
92 10 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 111.08 108.30 2.78  0.30 N 
93 10 N3    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 112.61 118.00 -5.39 0.70 N 
94 10 C5    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 125.58 120.20 5.38  0.70 N 
95 10 "O4'" A DC 4  ? ? "C1'" A DC 4  ? ? N1    A DC 4  ? ? 111.29 108.30 2.99  0.30 N 
96 10 "O4'" A DA 5  ? ? "C4'" A DA 5  ? ? "C3'" A DA 5  ? ? 109.91 106.00 3.91  0.60 N 
97 10 "O4'" A DC 6  ? ? "C4'" A DC 6  ? ? "C3'" A DC 6  ? ? 109.65 106.00 3.65  0.60 N 
98 10 "O4'" B G  11 ? ? "C1'" B G  11 ? ? N9    B G  11 ? ? 112.77 108.50 4.27  0.70 N 
99 10 "O4'" B U  14 ? ? "C1'" B U  14 ? ? N1    B U  14 ? ? 112.71 108.50 4.21  0.70 N 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1  1  DG A 7  ? ? 0.076 'SIDE CHAIN' 
2  1  C  B 9  ? ? 0.064 'SIDE CHAIN' 
3  1  G  B 16 ? ? 0.054 'SIDE CHAIN' 
4  2  DG A 7  ? ? 0.074 'SIDE CHAIN' 
5  2  C  B 9  ? ? 0.060 'SIDE CHAIN' 
6  2  G  B 11 ? ? 0.057 'SIDE CHAIN' 
7  2  G  B 16 ? ? 0.052 'SIDE CHAIN' 
8  3  DG A 7  ? ? 0.072 'SIDE CHAIN' 
9  3  C  B 9  ? ? 0.070 'SIDE CHAIN' 
10 3  G  B 11 ? ? 0.064 'SIDE CHAIN' 
11 3  G  B 16 ? ? 0.051 'SIDE CHAIN' 
12 4  C  B 9  ? ? 0.068 'SIDE CHAIN' 
13 6  DC A 1  ? ? 0.059 'SIDE CHAIN' 
14 6  C  B 9  ? ? 0.070 'SIDE CHAIN' 
15 6  G  B 16 ? ? 0.059 'SIDE CHAIN' 
16 7  DG A 7  ? ? 0.069 'SIDE CHAIN' 
17 7  C  B 9  ? ? 0.064 'SIDE CHAIN' 
18 7  G  B 16 ? ? 0.065 'SIDE CHAIN' 
19 8  DG A 7  ? ? 0.081 'SIDE CHAIN' 
20 9  DG A 7  ? ? 0.073 'SIDE CHAIN' 
21 9  C  B 9  ? ? 0.068 'SIDE CHAIN' 
22 9  G  B 11 ? ? 0.066 'SIDE CHAIN' 
23 10 DG A 7  ? ? 0.074 'SIDE CHAIN' 
24 10 C  B 9  ? ? 0.069 'SIDE CHAIN' 
# 
_pdbx_nmr_ensemble.entry_id                                      7NEJ 
_pdbx_nmr_ensemble.conformers_calculated_total_number            10 
_pdbx_nmr_ensemble.conformers_submitted_total_number             10 
_pdbx_nmr_ensemble.conformer_selection_criteria                  'all calculated structures submitted' 
_pdbx_nmr_ensemble.representative_conformer                      ? 
_pdbx_nmr_ensemble.average_constraints_per_residue               ? 
_pdbx_nmr_ensemble.average_constraint_violations_per_residue     ? 
_pdbx_nmr_ensemble.maximum_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.average_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.distance_constraint_violation_method          ? 
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method     ? 
# 
_pdbx_nmr_representative.entry_id             7NEJ 
_pdbx_nmr_representative.conformer_id         1 
_pdbx_nmr_representative.selection_criteria   'fewest violations' 
# 
loop_
_pdbx_nmr_sample_details.solution_id 
_pdbx_nmr_sample_details.contents 
_pdbx_nmr_sample_details.solvent_system 
_pdbx_nmr_sample_details.label 
_pdbx_nmr_sample_details.type 
_pdbx_nmr_sample_details.details 
1 
;0.5 M DNA (5'-D(*CP*TP*AP*CP*AP*CP*GP*G)-3'), 0.5 M RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3'), 100 mM sodium chloride, 25 mM sodium phosphate, 0.5 % v/v DSS, 90% H2O/10% D2O
;
'90% H2O/10% D2O' Hybrid_control     solution ? 
2 
;0.5 M DNA (5'-D(*CP*TP*AP*CP*AP*CP*GP*G)-3'), 0.5 M RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3'), 100 mM sodium chloride, 25 mM sodium phosphate, 0.5 % v/v DSS, 100% D2O
;
'100% D2O'        Hybrid_control_D2O solution ? 
# 
loop_
_pdbx_nmr_exptl_sample.solution_id 
_pdbx_nmr_exptl_sample.component 
_pdbx_nmr_exptl_sample.concentration 
_pdbx_nmr_exptl_sample.concentration_range 
_pdbx_nmr_exptl_sample.concentration_units 
_pdbx_nmr_exptl_sample.isotopic_labeling 
1 
;DNA (5'-D(*CP*TP*AP*CP*AP*CP*GP*G)-3')
;
0.5 ? M       'natural abundance' 
1 
;RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3')
;
0.5 ? M       'natural abundance' 
1 'sodium chloride'                        100 ? mM      'natural abundance' 
1 'sodium phosphate'                       25  ? mM      'natural abundance' 
1 DSS                                      0.5 ? '% v/v' 'natural abundance' 
2 
;DNA (5'-D(*CP*TP*AP*CP*AP*CP*GP*G)-3')
;
0.5 ? M       'natural abundance' 
2 
;RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3')
;
0.5 ? M       'natural abundance' 
2 'sodium chloride'                        100 ? mM      'natural abundance' 
2 'sodium phosphate'                       25  ? mM      'natural abundance' 
2 DSS                                      0.5 ? '% v/v' 'natural abundance' 
# 
loop_
_pdbx_nmr_exptl_sample_conditions.conditions_id 
_pdbx_nmr_exptl_sample_conditions.temperature 
_pdbx_nmr_exptl_sample_conditions.pressure_units 
_pdbx_nmr_exptl_sample_conditions.pressure 
_pdbx_nmr_exptl_sample_conditions.pH 
_pdbx_nmr_exptl_sample_conditions.ionic_strength 
_pdbx_nmr_exptl_sample_conditions.details 
_pdbx_nmr_exptl_sample_conditions.ionic_strength_err 
_pdbx_nmr_exptl_sample_conditions.ionic_strength_units 
_pdbx_nmr_exptl_sample_conditions.label 
_pdbx_nmr_exptl_sample_conditions.pH_err 
_pdbx_nmr_exptl_sample_conditions.pH_units 
_pdbx_nmr_exptl_sample_conditions.pressure_err 
_pdbx_nmr_exptl_sample_conditions.temperature_err 
_pdbx_nmr_exptl_sample_conditions.temperature_units 
1 278 atm 1 7 125 ? ? mM T5  ? pH ? ? K 
2 298 atm 1 7 125 ? ? mM T25 ? pH ? ? K 
# 
loop_
_pdbx_nmr_exptl.experiment_id 
_pdbx_nmr_exptl.conditions_id 
_pdbx_nmr_exptl.solution_id 
_pdbx_nmr_exptl.type 
_pdbx_nmr_exptl.spectrometer_id 
_pdbx_nmr_exptl.sample_state 
1 1 1 '2D 1H-1H NOESY' 1 isotropic 
2 1 1 '2D 1H-1H TOCSY' 1 isotropic 
3 2 2 '2D 1H-1H COSY'  1 isotropic 
4 2 2 '2D 1H-1H NOESY' 1 isotropic 
5 2 2 '2D 1H-1H TOCSY' 1 isotropic 
# 
_pdbx_nmr_refine.entry_id           7NEJ 
_pdbx_nmr_refine.method             'molecular dynamics' 
_pdbx_nmr_refine.details            ? 
_pdbx_nmr_refine.software_ordinal   5 
# 
loop_
_pdbx_nmr_software.ordinal 
_pdbx_nmr_software.classification 
_pdbx_nmr_software.name 
_pdbx_nmr_software.version 
_pdbx_nmr_software.authors 
1 collection                  TopSpin       ?  'Bruker Biospin'                                                           
2 processing                  TopSpin       ?  'Bruker Biospin'                                                           
3 'chemical shift assignment' NMRFAM-SPARKY ?  'Goddard & Kneller'                                                        
4 'structure calculation'     Amber         18 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 
5 refinement                  Amber         18 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 
6 'data analysis'             MOLMOL        ?  'Koradi, Billeter and Wuthrich'                                            
7 'data analysis'             3DNA          ?  'Lu & Olson'                                                               
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A  OP3    O N N 1   
A  P      P N N 2   
A  OP1    O N N 3   
A  OP2    O N N 4   
A  "O5'"  O N N 5   
A  "C5'"  C N N 6   
A  "C4'"  C N R 7   
A  "O4'"  O N N 8   
A  "C3'"  C N S 9   
A  "O3'"  O N N 10  
A  "C2'"  C N R 11  
A  "O2'"  O N N 12  
A  "C1'"  C N R 13  
A  N9     N Y N 14  
A  C8     C Y N 15  
A  N7     N Y N 16  
A  C5     C Y N 17  
A  C6     C Y N 18  
A  N6     N N N 19  
A  N1     N Y N 20  
A  C2     C Y N 21  
A  N3     N Y N 22  
A  C4     C Y N 23  
A  HOP3   H N N 24  
A  HOP2   H N N 25  
A  "H5'"  H N N 26  
A  "H5''" H N N 27  
A  "H4'"  H N N 28  
A  "H3'"  H N N 29  
A  "HO3'" H N N 30  
A  "H2'"  H N N 31  
A  "HO2'" H N N 32  
A  "H1'"  H N N 33  
A  H8     H N N 34  
A  H61    H N N 35  
A  H62    H N N 36  
A  H2     H N N 37  
C  OP3    O N N 38  
C  P      P N N 39  
C  OP1    O N N 40  
C  OP2    O N N 41  
C  "O5'"  O N N 42  
C  "C5'"  C N N 43  
C  "C4'"  C N R 44  
C  "O4'"  O N N 45  
C  "C3'"  C N S 46  
C  "O3'"  O N N 47  
C  "C2'"  C N R 48  
C  "O2'"  O N N 49  
C  "C1'"  C N R 50  
C  N1     N N N 51  
C  C2     C N N 52  
C  O2     O N N 53  
C  N3     N N N 54  
C  C4     C N N 55  
C  N4     N N N 56  
C  C5     C N N 57  
C  C6     C N N 58  
C  HOP3   H N N 59  
C  HOP2   H N N 60  
C  "H5'"  H N N 61  
C  "H5''" H N N 62  
C  "H4'"  H N N 63  
C  "H3'"  H N N 64  
C  "HO3'" H N N 65  
C  "H2'"  H N N 66  
C  "HO2'" H N N 67  
C  "H1'"  H N N 68  
C  H41    H N N 69  
C  H42    H N N 70  
C  H5     H N N 71  
C  H6     H N N 72  
DA OP3    O N N 73  
DA P      P N N 74  
DA OP1    O N N 75  
DA OP2    O N N 76  
DA "O5'"  O N N 77  
DA "C5'"  C N N 78  
DA "C4'"  C N R 79  
DA "O4'"  O N N 80  
DA "C3'"  C N S 81  
DA "O3'"  O N N 82  
DA "C2'"  C N N 83  
DA "C1'"  C N R 84  
DA N9     N Y N 85  
DA C8     C Y N 86  
DA N7     N Y N 87  
DA C5     C Y N 88  
DA C6     C Y N 89  
DA N6     N N N 90  
DA N1     N Y N 91  
DA C2     C Y N 92  
DA N3     N Y N 93  
DA C4     C Y N 94  
DA HOP3   H N N 95  
DA HOP2   H N N 96  
DA "H5'"  H N N 97  
DA "H5''" H N N 98  
DA "H4'"  H N N 99  
DA "H3'"  H N N 100 
DA "HO3'" H N N 101 
DA "H2'"  H N N 102 
DA "H2''" H N N 103 
DA "H1'"  H N N 104 
DA H8     H N N 105 
DA H61    H N N 106 
DA H62    H N N 107 
DA H2     H N N 108 
DC OP3    O N N 109 
DC P      P N N 110 
DC OP1    O N N 111 
DC OP2    O N N 112 
DC "O5'"  O N N 113 
DC "C5'"  C N N 114 
DC "C4'"  C N R 115 
DC "O4'"  O N N 116 
DC "C3'"  C N S 117 
DC "O3'"  O N N 118 
DC "C2'"  C N N 119 
DC "C1'"  C N R 120 
DC N1     N N N 121 
DC C2     C N N 122 
DC O2     O N N 123 
DC N3     N N N 124 
DC C4     C N N 125 
DC N4     N N N 126 
DC C5     C N N 127 
DC C6     C N N 128 
DC HOP3   H N N 129 
DC HOP2   H N N 130 
DC "H5'"  H N N 131 
DC "H5''" H N N 132 
DC "H4'"  H N N 133 
DC "H3'"  H N N 134 
DC "HO3'" H N N 135 
DC "H2'"  H N N 136 
DC "H2''" H N N 137 
DC "H1'"  H N N 138 
DC H41    H N N 139 
DC H42    H N N 140 
DC H5     H N N 141 
DC H6     H N N 142 
DG OP3    O N N 143 
DG P      P N N 144 
DG OP1    O N N 145 
DG OP2    O N N 146 
DG "O5'"  O N N 147 
DG "C5'"  C N N 148 
DG "C4'"  C N R 149 
DG "O4'"  O N N 150 
DG "C3'"  C N S 151 
DG "O3'"  O N N 152 
DG "C2'"  C N N 153 
DG "C1'"  C N R 154 
DG N9     N Y N 155 
DG C8     C Y N 156 
DG N7     N Y N 157 
DG C5     C Y N 158 
DG C6     C N N 159 
DG O6     O N N 160 
DG N1     N N N 161 
DG C2     C N N 162 
DG N2     N N N 163 
DG N3     N N N 164 
DG C4     C Y N 165 
DG HOP3   H N N 166 
DG HOP2   H N N 167 
DG "H5'"  H N N 168 
DG "H5''" H N N 169 
DG "H4'"  H N N 170 
DG "H3'"  H N N 171 
DG "HO3'" H N N 172 
DG "H2'"  H N N 173 
DG "H2''" H N N 174 
DG "H1'"  H N N 175 
DG H8     H N N 176 
DG H1     H N N 177 
DG H21    H N N 178 
DG H22    H N N 179 
DT OP3    O N N 180 
DT P      P N N 181 
DT OP1    O N N 182 
DT OP2    O N N 183 
DT "O5'"  O N N 184 
DT "C5'"  C N N 185 
DT "C4'"  C N R 186 
DT "O4'"  O N N 187 
DT "C3'"  C N S 188 
DT "O3'"  O N N 189 
DT "C2'"  C N N 190 
DT "C1'"  C N R 191 
DT N1     N N N 192 
DT C2     C N N 193 
DT O2     O N N 194 
DT N3     N N N 195 
DT C4     C N N 196 
DT O4     O N N 197 
DT C5     C N N 198 
DT C7     C N N 199 
DT C6     C N N 200 
DT HOP3   H N N 201 
DT HOP2   H N N 202 
DT "H5'"  H N N 203 
DT "H5''" H N N 204 
DT "H4'"  H N N 205 
DT "H3'"  H N N 206 
DT "HO3'" H N N 207 
DT "H2'"  H N N 208 
DT "H2''" H N N 209 
DT "H1'"  H N N 210 
DT H3     H N N 211 
DT H71    H N N 212 
DT H72    H N N 213 
DT H73    H N N 214 
DT H6     H N N 215 
G  OP3    O N N 216 
G  P      P N N 217 
G  OP1    O N N 218 
G  OP2    O N N 219 
G  "O5'"  O N N 220 
G  "C5'"  C N N 221 
G  "C4'"  C N R 222 
G  "O4'"  O N N 223 
G  "C3'"  C N S 224 
G  "O3'"  O N N 225 
G  "C2'"  C N R 226 
G  "O2'"  O N N 227 
G  "C1'"  C N R 228 
G  N9     N Y N 229 
G  C8     C Y N 230 
G  N7     N Y N 231 
G  C5     C Y N 232 
G  C6     C N N 233 
G  O6     O N N 234 
G  N1     N N N 235 
G  C2     C N N 236 
G  N2     N N N 237 
G  N3     N N N 238 
G  C4     C Y N 239 
G  HOP3   H N N 240 
G  HOP2   H N N 241 
G  "H5'"  H N N 242 
G  "H5''" H N N 243 
G  "H4'"  H N N 244 
G  "H3'"  H N N 245 
G  "HO3'" H N N 246 
G  "H2'"  H N N 247 
G  "HO2'" H N N 248 
G  "H1'"  H N N 249 
G  H8     H N N 250 
G  H1     H N N 251 
G  H21    H N N 252 
G  H22    H N N 253 
U  OP3    O N N 254 
U  P      P N N 255 
U  OP1    O N N 256 
U  OP2    O N N 257 
U  "O5'"  O N N 258 
U  "C5'"  C N N 259 
U  "C4'"  C N R 260 
U  "O4'"  O N N 261 
U  "C3'"  C N S 262 
U  "O3'"  O N N 263 
U  "C2'"  C N R 264 
U  "O2'"  O N N 265 
U  "C1'"  C N R 266 
U  N1     N N N 267 
U  C2     C N N 268 
U  O2     O N N 269 
U  N3     N N N 270 
U  C4     C N N 271 
U  O4     O N N 272 
U  C5     C N N 273 
U  C6     C N N 274 
U  HOP3   H N N 275 
U  HOP2   H N N 276 
U  "H5'"  H N N 277 
U  "H5''" H N N 278 
U  "H4'"  H N N 279 
U  "H3'"  H N N 280 
U  "HO3'" H N N 281 
U  "H2'"  H N N 282 
U  "HO2'" H N N 283 
U  "H1'"  H N N 284 
U  H3     H N N 285 
U  H5     H N N 286 
U  H6     H N N 287 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A  OP3   P      sing N N 1   
A  OP3   HOP3   sing N N 2   
A  P     OP1    doub N N 3   
A  P     OP2    sing N N 4   
A  P     "O5'"  sing N N 5   
A  OP2   HOP2   sing N N 6   
A  "O5'" "C5'"  sing N N 7   
A  "C5'" "C4'"  sing N N 8   
A  "C5'" "H5'"  sing N N 9   
A  "C5'" "H5''" sing N N 10  
A  "C4'" "O4'"  sing N N 11  
A  "C4'" "C3'"  sing N N 12  
A  "C4'" "H4'"  sing N N 13  
A  "O4'" "C1'"  sing N N 14  
A  "C3'" "O3'"  sing N N 15  
A  "C3'" "C2'"  sing N N 16  
A  "C3'" "H3'"  sing N N 17  
A  "O3'" "HO3'" sing N N 18  
A  "C2'" "O2'"  sing N N 19  
A  "C2'" "C1'"  sing N N 20  
A  "C2'" "H2'"  sing N N 21  
A  "O2'" "HO2'" sing N N 22  
A  "C1'" N9     sing N N 23  
A  "C1'" "H1'"  sing N N 24  
A  N9    C8     sing Y N 25  
A  N9    C4     sing Y N 26  
A  C8    N7     doub Y N 27  
A  C8    H8     sing N N 28  
A  N7    C5     sing Y N 29  
A  C5    C6     sing Y N 30  
A  C5    C4     doub Y N 31  
A  C6    N6     sing N N 32  
A  C6    N1     doub Y N 33  
A  N6    H61    sing N N 34  
A  N6    H62    sing N N 35  
A  N1    C2     sing Y N 36  
A  C2    N3     doub Y N 37  
A  C2    H2     sing N N 38  
A  N3    C4     sing Y N 39  
C  OP3   P      sing N N 40  
C  OP3   HOP3   sing N N 41  
C  P     OP1    doub N N 42  
C  P     OP2    sing N N 43  
C  P     "O5'"  sing N N 44  
C  OP2   HOP2   sing N N 45  
C  "O5'" "C5'"  sing N N 46  
C  "C5'" "C4'"  sing N N 47  
C  "C5'" "H5'"  sing N N 48  
C  "C5'" "H5''" sing N N 49  
C  "C4'" "O4'"  sing N N 50  
C  "C4'" "C3'"  sing N N 51  
C  "C4'" "H4'"  sing N N 52  
C  "O4'" "C1'"  sing N N 53  
C  "C3'" "O3'"  sing N N 54  
C  "C3'" "C2'"  sing N N 55  
C  "C3'" "H3'"  sing N N 56  
C  "O3'" "HO3'" sing N N 57  
C  "C2'" "O2'"  sing N N 58  
C  "C2'" "C1'"  sing N N 59  
C  "C2'" "H2'"  sing N N 60  
C  "O2'" "HO2'" sing N N 61  
C  "C1'" N1     sing N N 62  
C  "C1'" "H1'"  sing N N 63  
C  N1    C2     sing N N 64  
C  N1    C6     sing N N 65  
C  C2    O2     doub N N 66  
C  C2    N3     sing N N 67  
C  N3    C4     doub N N 68  
C  C4    N4     sing N N 69  
C  C4    C5     sing N N 70  
C  N4    H41    sing N N 71  
C  N4    H42    sing N N 72  
C  C5    C6     doub N N 73  
C  C5    H5     sing N N 74  
C  C6    H6     sing N N 75  
DA OP3   P      sing N N 76  
DA OP3   HOP3   sing N N 77  
DA P     OP1    doub N N 78  
DA P     OP2    sing N N 79  
DA P     "O5'"  sing N N 80  
DA OP2   HOP2   sing N N 81  
DA "O5'" "C5'"  sing N N 82  
DA "C5'" "C4'"  sing N N 83  
DA "C5'" "H5'"  sing N N 84  
DA "C5'" "H5''" sing N N 85  
DA "C4'" "O4'"  sing N N 86  
DA "C4'" "C3'"  sing N N 87  
DA "C4'" "H4'"  sing N N 88  
DA "O4'" "C1'"  sing N N 89  
DA "C3'" "O3'"  sing N N 90  
DA "C3'" "C2'"  sing N N 91  
DA "C3'" "H3'"  sing N N 92  
DA "O3'" "HO3'" sing N N 93  
DA "C2'" "C1'"  sing N N 94  
DA "C2'" "H2'"  sing N N 95  
DA "C2'" "H2''" sing N N 96  
DA "C1'" N9     sing N N 97  
DA "C1'" "H1'"  sing N N 98  
DA N9    C8     sing Y N 99  
DA N9    C4     sing Y N 100 
DA C8    N7     doub Y N 101 
DA C8    H8     sing N N 102 
DA N7    C5     sing Y N 103 
DA C5    C6     sing Y N 104 
DA C5    C4     doub Y N 105 
DA C6    N6     sing N N 106 
DA C6    N1     doub Y N 107 
DA N6    H61    sing N N 108 
DA N6    H62    sing N N 109 
DA N1    C2     sing Y N 110 
DA C2    N3     doub Y N 111 
DA C2    H2     sing N N 112 
DA N3    C4     sing Y N 113 
DC OP3   P      sing N N 114 
DC OP3   HOP3   sing N N 115 
DC P     OP1    doub N N 116 
DC P     OP2    sing N N 117 
DC P     "O5'"  sing N N 118 
DC OP2   HOP2   sing N N 119 
DC "O5'" "C5'"  sing N N 120 
DC "C5'" "C4'"  sing N N 121 
DC "C5'" "H5'"  sing N N 122 
DC "C5'" "H5''" sing N N 123 
DC "C4'" "O4'"  sing N N 124 
DC "C4'" "C3'"  sing N N 125 
DC "C4'" "H4'"  sing N N 126 
DC "O4'" "C1'"  sing N N 127 
DC "C3'" "O3'"  sing N N 128 
DC "C3'" "C2'"  sing N N 129 
DC "C3'" "H3'"  sing N N 130 
DC "O3'" "HO3'" sing N N 131 
DC "C2'" "C1'"  sing N N 132 
DC "C2'" "H2'"  sing N N 133 
DC "C2'" "H2''" sing N N 134 
DC "C1'" N1     sing N N 135 
DC "C1'" "H1'"  sing N N 136 
DC N1    C2     sing N N 137 
DC N1    C6     sing N N 138 
DC C2    O2     doub N N 139 
DC C2    N3     sing N N 140 
DC N3    C4     doub N N 141 
DC C4    N4     sing N N 142 
DC C4    C5     sing N N 143 
DC N4    H41    sing N N 144 
DC N4    H42    sing N N 145 
DC C5    C6     doub N N 146 
DC C5    H5     sing N N 147 
DC C6    H6     sing N N 148 
DG OP3   P      sing N N 149 
DG OP3   HOP3   sing N N 150 
DG P     OP1    doub N N 151 
DG P     OP2    sing N N 152 
DG P     "O5'"  sing N N 153 
DG OP2   HOP2   sing N N 154 
DG "O5'" "C5'"  sing N N 155 
DG "C5'" "C4'"  sing N N 156 
DG "C5'" "H5'"  sing N N 157 
DG "C5'" "H5''" sing N N 158 
DG "C4'" "O4'"  sing N N 159 
DG "C4'" "C3'"  sing N N 160 
DG "C4'" "H4'"  sing N N 161 
DG "O4'" "C1'"  sing N N 162 
DG "C3'" "O3'"  sing N N 163 
DG "C3'" "C2'"  sing N N 164 
DG "C3'" "H3'"  sing N N 165 
DG "O3'" "HO3'" sing N N 166 
DG "C2'" "C1'"  sing N N 167 
DG "C2'" "H2'"  sing N N 168 
DG "C2'" "H2''" sing N N 169 
DG "C1'" N9     sing N N 170 
DG "C1'" "H1'"  sing N N 171 
DG N9    C8     sing Y N 172 
DG N9    C4     sing Y N 173 
DG C8    N7     doub Y N 174 
DG C8    H8     sing N N 175 
DG N7    C5     sing Y N 176 
DG C5    C6     sing N N 177 
DG C5    C4     doub Y N 178 
DG C6    O6     doub N N 179 
DG C6    N1     sing N N 180 
DG N1    C2     sing N N 181 
DG N1    H1     sing N N 182 
DG C2    N2     sing N N 183 
DG C2    N3     doub N N 184 
DG N2    H21    sing N N 185 
DG N2    H22    sing N N 186 
DG N3    C4     sing N N 187 
DT OP3   P      sing N N 188 
DT OP3   HOP3   sing N N 189 
DT P     OP1    doub N N 190 
DT P     OP2    sing N N 191 
DT P     "O5'"  sing N N 192 
DT OP2   HOP2   sing N N 193 
DT "O5'" "C5'"  sing N N 194 
DT "C5'" "C4'"  sing N N 195 
DT "C5'" "H5'"  sing N N 196 
DT "C5'" "H5''" sing N N 197 
DT "C4'" "O4'"  sing N N 198 
DT "C4'" "C3'"  sing N N 199 
DT "C4'" "H4'"  sing N N 200 
DT "O4'" "C1'"  sing N N 201 
DT "C3'" "O3'"  sing N N 202 
DT "C3'" "C2'"  sing N N 203 
DT "C3'" "H3'"  sing N N 204 
DT "O3'" "HO3'" sing N N 205 
DT "C2'" "C1'"  sing N N 206 
DT "C2'" "H2'"  sing N N 207 
DT "C2'" "H2''" sing N N 208 
DT "C1'" N1     sing N N 209 
DT "C1'" "H1'"  sing N N 210 
DT N1    C2     sing N N 211 
DT N1    C6     sing N N 212 
DT C2    O2     doub N N 213 
DT C2    N3     sing N N 214 
DT N3    C4     sing N N 215 
DT N3    H3     sing N N 216 
DT C4    O4     doub N N 217 
DT C4    C5     sing N N 218 
DT C5    C7     sing N N 219 
DT C5    C6     doub N N 220 
DT C7    H71    sing N N 221 
DT C7    H72    sing N N 222 
DT C7    H73    sing N N 223 
DT C6    H6     sing N N 224 
G  OP3   P      sing N N 225 
G  OP3   HOP3   sing N N 226 
G  P     OP1    doub N N 227 
G  P     OP2    sing N N 228 
G  P     "O5'"  sing N N 229 
G  OP2   HOP2   sing N N 230 
G  "O5'" "C5'"  sing N N 231 
G  "C5'" "C4'"  sing N N 232 
G  "C5'" "H5'"  sing N N 233 
G  "C5'" "H5''" sing N N 234 
G  "C4'" "O4'"  sing N N 235 
G  "C4'" "C3'"  sing N N 236 
G  "C4'" "H4'"  sing N N 237 
G  "O4'" "C1'"  sing N N 238 
G  "C3'" "O3'"  sing N N 239 
G  "C3'" "C2'"  sing N N 240 
G  "C3'" "H3'"  sing N N 241 
G  "O3'" "HO3'" sing N N 242 
G  "C2'" "O2'"  sing N N 243 
G  "C2'" "C1'"  sing N N 244 
G  "C2'" "H2'"  sing N N 245 
G  "O2'" "HO2'" sing N N 246 
G  "C1'" N9     sing N N 247 
G  "C1'" "H1'"  sing N N 248 
G  N9    C8     sing Y N 249 
G  N9    C4     sing Y N 250 
G  C8    N7     doub Y N 251 
G  C8    H8     sing N N 252 
G  N7    C5     sing Y N 253 
G  C5    C6     sing N N 254 
G  C5    C4     doub Y N 255 
G  C6    O6     doub N N 256 
G  C6    N1     sing N N 257 
G  N1    C2     sing N N 258 
G  N1    H1     sing N N 259 
G  C2    N2     sing N N 260 
G  C2    N3     doub N N 261 
G  N2    H21    sing N N 262 
G  N2    H22    sing N N 263 
G  N3    C4     sing N N 264 
U  OP3   P      sing N N 265 
U  OP3   HOP3   sing N N 266 
U  P     OP1    doub N N 267 
U  P     OP2    sing N N 268 
U  P     "O5'"  sing N N 269 
U  OP2   HOP2   sing N N 270 
U  "O5'" "C5'"  sing N N 271 
U  "C5'" "C4'"  sing N N 272 
U  "C5'" "H5'"  sing N N 273 
U  "C5'" "H5''" sing N N 274 
U  "C4'" "O4'"  sing N N 275 
U  "C4'" "C3'"  sing N N 276 
U  "C4'" "H4'"  sing N N 277 
U  "O4'" "C1'"  sing N N 278 
U  "C3'" "O3'"  sing N N 279 
U  "C3'" "C2'"  sing N N 280 
U  "C3'" "H3'"  sing N N 281 
U  "O3'" "HO3'" sing N N 282 
U  "C2'" "O2'"  sing N N 283 
U  "C2'" "C1'"  sing N N 284 
U  "C2'" "H2'"  sing N N 285 
U  "O2'" "HO2'" sing N N 286 
U  "C1'" N1     sing N N 287 
U  "C1'" "H1'"  sing N N 288 
U  N1    C2     sing N N 289 
U  N1    C6     sing N N 290 
U  C2    O2     doub N N 291 
U  C2    N3     sing N N 292 
U  N3    C4     sing N N 293 
U  N3    H3     sing N N 294 
U  C4    O4     doub N N 295 
U  C4    C5     sing N N 296 
U  C5    C6     doub N N 297 
U  C5    H5     sing N N 298 
U  C6    H6     sing N N 299 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
7NEJ 'double helix'        
7NEJ 'a-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1 1_555 B G 8 1_555 0.454  -0.174 -0.475 13.240 -11.971 2.200  1 A_DC1:G16_B A 1 ? B 16 ? 19 1 
1 A DT 2 1_555 B A 7 1_555 -0.293 0.075  -0.070 20.474 -4.734  5.557  2 A_DT2:A15_B A 2 ? B 15 ? 20 1 
1 A DA 3 1_555 B U 6 1_555 0.534  -0.048 -0.267 8.261  -5.832  0.064  3 A_DA3:U14_B A 3 ? B 14 ? 20 1 
1 A DC 4 1_555 B G 5 1_555 0.269  -0.116 -0.127 11.209 -7.674  0.964  4 A_DC4:G13_B A 4 ? B 13 ? 19 1 
1 A DA 5 1_555 B U 4 1_555 0.188  -0.025 0.107  15.742 -5.232  2.179  5 A_DA5:U12_B A 5 ? B 12 ? 20 1 
1 A DC 6 1_555 B G 3 1_555 0.721  -0.186 -0.207 12.749 -7.731  2.454  6 A_DC6:G11_B A 6 ? B 11 ? 19 1 
1 A DG 7 1_555 B C 2 1_555 -0.698 -0.257 0.235  15.424 -11.750 1.492  7 A_DG7:C10_B A 7 ? B 10 ? 19 1 
1 A DG 8 1_555 B C 1 1_555 0.100  -0.110 0.159  11.326 -3.039  -2.197 8 A_DG8:C9_B  A 8 ? B 9  ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1 1_555 B G 8 1_555 A DT 2 1_555 B A 7 1_555 0.048  -1.124 3.461 -2.570 4.575  26.223 -3.653 -0.791 3.202 9.956  5.592  
26.734 1 AA_DC1DT2:A15G16_BB A 1 ? B 16 ? A 2 ? B 15 ? 
1 A DT 2 1_555 B A 7 1_555 A DA 3 1_555 B U 6 1_555 -1.373 -0.939 3.578 -2.032 18.058 38.341 -3.244 1.685  2.935 25.803 2.904  
42.283 2 AA_DT2DA3:U14A15_BB A 2 ? B 15 ? A 3 ? B 14 ? 
1 A DA 3 1_555 B U 6 1_555 A DC 4 1_555 B G 5 1_555 0.436  -1.437 3.347 -3.280 0.343  27.134 -3.127 -1.749 3.255 0.729  6.959  
27.330 3 AA_DA3DC4:G13U14_BB A 3 ? B 14 ? A 4 ? B 13 ? 
1 A DC 4 1_555 B G 5 1_555 A DA 5 1_555 B U 4 1_555 -0.510 -1.098 3.160 -4.146 10.037 31.053 -3.534 0.243  2.727 18.069 7.464  
32.853 4 AA_DC4DA5:U12G13_BB A 4 ? B 13 ? A 5 ? B 12 ? 
1 A DA 5 1_555 B U 4 1_555 A DC 6 1_555 B G 3 1_555 -0.693 -1.065 3.475 1.599  11.625 31.602 -3.742 1.458  2.878 20.483 -2.818 
33.658 5 AA_DA5DC6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 
1 A DC 6 1_555 B G 3 1_555 A DG 7 1_555 B C 2 1_555 -0.743 -0.910 3.298 -5.174 8.111  28.468 -3.411 0.379  3.016 15.929 10.162 
30.018 6 AA_DC6DG7:C10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 
1 A DG 7 1_555 B C 2 1_555 A DG 8 1_555 B C 1 1_555 -0.369 -0.648 3.391 -1.601 9.810  37.334 -2.211 0.358  3.141 15.002 2.448  
38.589 7 AA_DG7DG8:C9C10_BB  A 7 ? B 10 ? A 8 ? B 9  ? 
# 
loop_
_pdbx_audit_support.funding_organization 
_pdbx_audit_support.country 
_pdbx_audit_support.grant_number 
_pdbx_audit_support.ordinal 
'Spanish Ministry of Science, Innovation, and Universities' Spain PRE2018-083173  1 
'Spanish Ministry of Science, Innovation, and Universities' Spain BFU2017-89707-P 2 
# 
_pdbx_nmr_spectrometer.spectrometer_id   1 
_pdbx_nmr_spectrometer.model             AVANCE 
_pdbx_nmr_spectrometer.type              ? 
_pdbx_nmr_spectrometer.manufacturer      Bruker 
_pdbx_nmr_spectrometer.field_strength    600 
_pdbx_nmr_spectrometer.details           ? 
# 
_atom_sites.entry_id                    7NEJ 
_atom_sites.Cartn_transf_matrix[1][1]   ? 
_atom_sites.Cartn_transf_matrix[1][2]   ? 
_atom_sites.Cartn_transf_matrix[1][3]   ? 
_atom_sites.Cartn_transf_matrix[2][1]   ? 
_atom_sites.Cartn_transf_matrix[2][2]   ? 
_atom_sites.Cartn_transf_matrix[2][3]   ? 
_atom_sites.Cartn_transf_matrix[3][1]   ? 
_atom_sites.Cartn_transf_matrix[3][2]   ? 
_atom_sites.Cartn_transf_matrix[3][3]   ? 
_atom_sites.Cartn_transf_vector[1]      ? 
_atom_sites.Cartn_transf_vector[2]      ? 
_atom_sites.Cartn_transf_vector[3]      ? 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
_atom_sites.solution_primary            ? 
_atom_sites.solution_secondary          ? 
_atom_sites.solution_hydrogens          ? 
_atom_sites.special_details             ? 
# 
loop_
_atom_type.symbol 
C 
H 
N 
O 
P 
# 
loop_