HEADER TRANSPORT PROTEIN 04-FEB-21 7NEK TITLE SUSD PROTEIN FROM HUMAN GUT UNCULTURED BACTEROIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAGB SUSD DOMAIN CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUTRIENTS, ENTRY, OLIGOSACCHARIDES, TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CIOCI,A.TAUZIN,Z.WANG,B.MACHADO,G.LIPPENS,G.POTOCKI-VERONESE REVDAT 2 01-MAY-24 7NEK 1 REMARK REVDAT 1 02-MAR-22 7NEK 0 JRNL AUTH C.CIOCI JRNL TITL SUSD PROTEIN FROM HUMAN GUT UNCULTURED BACTEROIDES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 127.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2089 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3002 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4849 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.28000 REMARK 3 B22 (A**2) : -4.28000 REMARK 3 B33 (A**2) : 8.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.237 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.388 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4988 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4411 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6795 ; 1.113 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10112 ; 0.769 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 613 ; 5.618 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 259 ;34.050 ;23.938 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 727 ;14.485 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;14.032 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 698 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5863 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1255 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2458 ; 1.217 ; 5.332 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2457 ; 1.217 ; 5.331 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3069 ; 2.102 ; 7.995 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3070 ; 2.102 ; 7.995 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2528 ; 1.076 ; 5.422 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2528 ; 1.074 ; 5.422 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3725 ; 1.847 ; 8.097 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 21645 ; 4.709 ;50.411 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 21645 ; 4.709 ;50.411 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 646 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8132 15.3034 -25.1075 REMARK 3 T TENSOR REMARK 3 T11: 0.0871 T22: 0.3142 REMARK 3 T33: 0.2612 T12: 0.0318 REMARK 3 T13: 0.0440 T23: 0.0936 REMARK 3 L TENSOR REMARK 3 L11: 2.2426 L22: 1.9202 REMARK 3 L33: 0.9449 L12: -0.0417 REMARK 3 L13: 0.1368 L23: -0.1750 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: 0.2756 S13: 0.5516 REMARK 3 S21: -0.0328 S22: 0.0473 S23: 0.1208 REMARK 3 S31: -0.2423 S32: 0.0108 S33: -0.0105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7NEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292113665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43113 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 127.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.73600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: FROM MORDA SERVER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M NA3CITRATE, 15% GLYCEROL, 0.1M REMARK 280 HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 89.54300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 89.54300 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.11450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 89.54300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.55725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 89.54300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 136.67175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 89.54300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 136.67175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.54300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.55725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 89.54300 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 89.54300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.11450 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 89.54300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 89.54300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 91.11450 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 89.54300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 136.67175 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 89.54300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 45.55725 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 89.54300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 45.55725 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 89.54300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 136.67175 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 89.54300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 89.54300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 91.11450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 318 REMARK 465 GLY A 319 REMARK 465 GLY A 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 306 CG OD1 OD2 REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 LYS A 436 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CZ TYR A 309 OH TYR A 309 8555 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 74 -50.11 -133.25 REMARK 500 THR A 77 -169.35 -107.67 REMARK 500 ASN A 135 119.30 -37.08 REMARK 500 SER A 166 16.22 -140.81 REMARK 500 ILE A 173 -66.62 -92.69 REMARK 500 ASN A 235 56.33 35.26 REMARK 500 MET A 330 55.43 -95.30 REMARK 500 TYR A 354 -111.24 -97.53 REMARK 500 PHE A 372 52.55 -99.59 REMARK 500 THR A 384 -52.44 -120.09 REMARK 500 ASN A 392 30.28 -142.30 REMARK 500 ALA A 406 79.76 57.17 REMARK 500 GLN A 423 -73.06 -116.73 REMARK 500 ASP A 424 57.34 -110.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 701 DBREF 7NEK A 30 646 UNP S6CP61 S6CP61_9BACT 30 646 SEQADV 7NEK HIS A 29 UNP S6CP61 EXPRESSION TAG SEQADV 7NEK MET A 30 UNP S6CP61 LEU 30 CONFLICT SEQRES 1 A 618 HIS MET ASP GLU GLN PRO ARG SER SER TYR ASP PRO THR SEQRES 2 A 618 PHE PHE LYS THR GLU LYS GLY VAL GLU GLY GLY VAL THR SEQRES 3 A 618 SER MET TYR ALA HIS LEU ARG TYR ILE TYR GLY GLN ALA SEQRES 4 A 618 TYR TYR TYR ASN SER CYS LEU THR GLY THR ASP GLU ALA SEQRES 5 A 618 THR TRP GLY TRP SER ALA ASP GLY ASN PHE LYS ASP ALA SEQRES 6 A 618 ASP LEU SER GLY VAL GLY ASN LEU THR ALA THR THR CYS SEQRES 7 A 618 ARG SER ASP ALA LEU TRP GLY THR ALA PHE SER ASN ILE SEQRES 8 A 618 ASN THR ALA ASN GLY VAL ILE GLU ASN GLY ALA GLU VAL SEQRES 9 A 618 GLY VAL ASN GLU SER LEU VAL SER GLU ALA ARG PHE PHE SEQRES 10 A 618 ARG ALA PHE ASP TYR PHE LEU LEU VAL GLN THR PHE GLY SEQRES 11 A 618 GLY VAL PRO LEU ASP LEU GLY SER GLY GLU LEU LYS PHE SEQRES 12 A 618 ASN ILE THR PRO SER ARG THR SER VAL ARG ASN THR VAL SEQRES 13 A 618 PRO GLU VAL TYR THR LYS ALA ILE PHE PRO ASP LEU LEU SEQRES 14 A 618 THR ALA ILE GLU ASN LEU PRO ALA ASN PRO ARG VAL THR SEQRES 15 A 618 GLY GLY VAL THR LYS THR VAL ALA ARG LEU TYR LEU ALA SEQRES 16 A 618 LYS ALA TYR LEU THR TYR ALA TRP TRP LEU LYS ASN PRO SEQRES 17 A 618 ASN ASN ILE PRO THR TYR PRO GLU CYS GLN ARG THR ASP SEQRES 18 A 618 PRO ASN GLY HIS ASP ALA ALA TRP TYR PHE GLN GLN ALA SEQRES 19 A 618 TYR ASP VAL ALA VAL THR ALA ILE GLU ASN PRO GLY PRO SEQRES 20 A 618 PHE GLY LEU GLN GLU SER PHE TRP MET VAL ASN ALA GLY SEQRES 21 A 618 PRO ASN ASP ARG ASN MET GLU ILE LEU LEU TYR ALA ASP SEQRES 22 A 618 HIS THR GLN GLU ASP GLU TYR TYR ASN GLY GLY SER LEU SEQRES 23 A 618 SER TYR GLY GLY GLY GLY ALA PRO ASP ASN PHE ALA GLY SEQRES 24 A 618 TRP MET MET ASN TRP ASN TYR THR ASP ALA ARG SER ALA SEQRES 25 A 618 ASP ASN GLN ALA VAL ILE ASN ARG ILE ALA GLU GLN CYS SEQRES 26 A 618 TYR GLY ARG PRO TRP THR ARG MET ALA PRO PRO LEU GLY SEQRES 27 A 618 VAL PHE THR LYS THR PHE ALA ASP LYS VAL ASN ASP SER SEQRES 28 A 618 ARG TYR ASP GLY THR PHE THR THR VAL TYR ARG GLY ASN SEQRES 29 A 618 TRP SER THR ALA GLY GLN ASN TRP GLU SER VAL THR ASN SEQRES 30 A 618 ALA ASN GLY MET LYS VAL LYS GLU ARG GLU PRO ILE PHE SEQRES 31 A 618 SER PHE VAL PHE GLN ASP MET ASP LYS ILE ASP TYR ALA SEQRES 32 A 618 GLY GLU GLY SER LYS SER ASN LEU GLY ALA GLY THR LEU SEQRES 33 A 618 PRO ASP ARG ALA ASP TRP VAL LEU GLY LEU ASP ALA VAL SEQRES 34 A 618 GLY ARG TYR VAL TYR PRO GLY LEU TRP LYS LEU GLY PRO SEQRES 35 A 618 TYR ARG THR ASP ASN GLY SER GLY ALA GLY GLN PRO ASN SEQRES 36 A 618 ALA GLY SER THR ARG PRO TYR ASN ILE ALA LYS PHE SER SEQRES 37 A 618 GLU LEU TYR LEU VAL ALA ALA GLU ALA ALA VAL GLU GLY SEQRES 38 A 618 ALA ALA THR GLN ALA GLY LYS SER ALA ARG ASP LEU VAL SEQRES 39 A 618 ASN VAL LEU ARG ALA ARG ALA GLY ARG TRP THR TYR SER SEQRES 40 A 618 ASN ALA GLU TYR LYS GLU VAL ASP ARG ASP PHE SER ALA SEQRES 41 A 618 GLU MET THR ALA ALA THR PRO ALA THR ILE ASP ILE ASN SEQRES 42 A 618 TYR ILE LEU ASP GLU ARG SER ARG GLU PHE TYR GLY GLU SEQRES 43 A 618 GLY TYR ARG TRP PHE ASP LEU VAL ARG THR GLN LYS TRP SEQRES 44 A 618 ASN GLU TYR ALA ASP SER TYR VAL ILE CYS GLY GLY LYS SEQRES 45 A 618 GLY ASP HIS ASN PRO GLN THR TYR SER ARG THR ILE GLU SEQRES 46 A 618 ALA PHE HIS TYR LEU ARG PRO ILE PRO GLN GLY GLN LEU SEQRES 47 A 618 ASP GLY MET GLU MET THR GLU GLU GLU LYS ASP ALA TYR SEQRES 48 A 618 GLN ASN PRO GLY TYR ARG ASP HET GOL A 701 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *16(H2 O) HELIX 1 AA1 TYR A 38 PHE A 43 1 6 HELIX 2 AA2 THR A 45 LEU A 60 1 16 HELIX 3 AA3 ARG A 61 ILE A 63 5 3 HELIX 4 AA4 GLN A 66 CYS A 73 1 8 HELIX 5 AA5 ASP A 87 ASP A 94 1 8 HELIX 6 AA6 SER A 108 GLY A 133 1 26 HELIX 7 AA7 ASN A 135 GLY A 158 1 24 HELIX 8 AA8 THR A 183 ALA A 191 1 9 HELIX 9 AA9 ALA A 191 LEU A 203 1 13 HELIX 10 AB1 THR A 214 ASN A 235 1 22 HELIX 11 AB2 ASP A 254 ASN A 272 1 19 HELIX 12 AB3 SER A 281 ALA A 287 1 7 HELIX 13 AB4 GLY A 288 ASP A 291 5 4 HELIX 14 AB5 PHE A 325 MET A 329 5 5 HELIX 15 AB6 ASN A 333 ALA A 337 5 5 HELIX 16 AB7 LEU A 365 LYS A 370 1 6 HELIX 17 AB8 ASP A 378 GLY A 383 1 6 HELIX 18 AB9 ASN A 392 GLY A 397 5 6 HELIX 19 AC1 ASP A 424 ILE A 428 5 5 HELIX 20 AC2 GLY A 432 ASN A 438 5 7 HELIX 21 AC3 LYS A 467 GLY A 469 5 3 HELIX 22 AC4 PHE A 495 GLU A 508 1 14 HELIX 23 AC5 SER A 517 GLY A 530 1 14 HELIX 24 AC6 PHE A 546 ALA A 553 1 8 HELIX 25 AC7 ASP A 559 TYR A 572 1 14 HELIX 26 AC8 TYR A 576 THR A 584 1 9 HELIX 27 AC9 LYS A 586 ASP A 592 1 7 HELIX 28 AD1 GLU A 613 LEU A 618 5 6 HELIX 29 AD2 PRO A 622 GLY A 628 1 7 HELIX 30 AD3 THR A 632 GLN A 640 1 9 SHEET 1 AA1 2 THR A 81 TRP A 82 0 SHEET 2 AA1 2 MET A 361 ALA A 362 -1 O ALA A 362 N THR A 81 SHEET 1 AA2 2 ILE A 296 ALA A 300 0 SHEET 2 AA2 2 TYR A 490 LYS A 494 -1 O TYR A 490 N ALA A 300 SHEET 1 AA3 2 TYR A 309 ASN A 310 0 SHEET 2 AA3 2 SER A 313 LEU A 314 -1 O SER A 313 N ASN A 310 SHEET 1 AA4 2 PHE A 385 THR A 386 0 SHEET 2 AA4 2 GLY A 464 LEU A 465 -1 O GLY A 464 N THR A 386 SHEET 1 AA5 3 VAL A 388 ARG A 390 0 SHEET 2 AA5 3 PRO A 416 VAL A 421 -1 O PHE A 418 N TYR A 389 SHEET 3 AA5 3 TRP A 450 GLY A 453 1 O TRP A 450 N ILE A 417 SHEET 1 AA6 2 SER A 402 ASN A 405 0 SHEET 2 AA6 2 MET A 409 LYS A 412 -1 O VAL A 411 N VAL A 403 SHEET 1 AA7 2 ARG A 531 SER A 535 0 SHEET 2 AA7 2 LYS A 540 ASP A 545 -1 O LYS A 540 N SER A 535 SHEET 1 AA8 2 SER A 593 ILE A 596 0 SHEET 2 AA8 2 GLN A 606 SER A 609 -1 O TYR A 608 N TYR A 594 CISPEP 1 TYR A 242 PRO A 243 0 -3.51 SITE 1 AC1 2 ARG A 348 ARG A 356 CRYST1 179.086 179.086 182.229 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005584 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005488 0.00000