HEADER DE NOVO PROTEIN 07-FEB-21 7NFJ TITLE A HEPTAMERIC BARREL STATE OF A DE NOVO COILED-COIL ASSEMBLY: CC-TYPE2- TITLE 2 (LAID)4-L28Y. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CC-TYPE2-(LAID)4-L28Y; COMPND 3 CHAIN: A, B, C, D, E, F, G; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS COILED COIL, SYNTHETIC PEPTIDE, HOMOMERIC ASSEMBLY, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.G.RHYS,W.M.DAWSON,R.L.BRADY,D.N.WOOLFSON REVDAT 3 01-MAY-24 7NFJ 1 REMARK REVDAT 2 08-FEB-23 7NFJ 1 JRNL REMARK REVDAT 1 02-MAR-22 7NFJ 0 JRNL AUTH W.M.DAWSON,K.L.SHELLEY,J.M.FLETCHER,D.A.SCOTT,L.LOMBARDI, JRNL AUTH 2 G.G.RHYS,T.J.LAGAMBINA,U.OBST,A.J.BURTON,J.A.CROSS,G.DAVIES, JRNL AUTH 3 F.J.O.MARTIN,F.J.WISEMAN,R.L.BRADY,D.TEW,C.W.WOOD, JRNL AUTH 4 D.N.WOOLFSON JRNL TITL DIFFERENTIAL SENSING WITH ARRAYS OF DE NOVO DESIGNED PEPTIDE JRNL TITL 2 ASSEMBLIES. JRNL REF NAT COMMUN V. 14 383 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 36693847 JRNL DOI 10.1038/S41467-023-36024-Y REMARK 2 REMARK 2 RESOLUTION. 1.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0266 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 71552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3764 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4371 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.4660 REMARK 3 BIN FREE R VALUE SET COUNT : 242 REMARK 3 BIN FREE R VALUE : 0.5070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1614 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.17000 REMARK 3 B22 (A**2) : -1.86000 REMARK 3 B33 (A**2) : 0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.038 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.701 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1746 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1811 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2354 ; 1.847 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4194 ; 1.675 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ; 3.612 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;38.445 ;26.081 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 358 ;14.212 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 237 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2011 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 333 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3557 ; 5.975 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 21 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 30 B 1 30 850 0.090 0.050 REMARK 3 2 A 1 30 C 1 30 838 0.100 0.050 REMARK 3 3 A 1 30 D 1 30 841 0.110 0.050 REMARK 3 4 A 1 30 E 1 30 823 0.110 0.050 REMARK 3 5 A 1 30 F 1 30 852 0.090 0.050 REMARK 3 6 A 1 30 G 1 30 829 0.100 0.050 REMARK 3 7 B 1 30 C 1 30 912 0.100 0.050 REMARK 3 8 B 1 30 D 1 30 916 0.080 0.050 REMARK 3 9 B 1 30 E 1 30 913 0.090 0.050 REMARK 3 10 B 1 30 F 1 30 917 0.100 0.050 REMARK 3 11 B 1 30 G 1 30 911 0.070 0.050 REMARK 3 12 C 1 30 D 1 30 841 0.110 0.050 REMARK 3 13 C 1 30 E 1 30 859 0.090 0.050 REMARK 3 14 C 1 30 F 1 30 858 0.120 0.050 REMARK 3 15 C 1 30 G 1 30 857 0.100 0.050 REMARK 3 16 D 1 30 E 1 30 858 0.110 0.050 REMARK 3 17 D 1 30 F 1 30 889 0.110 0.050 REMARK 3 18 D 1 30 G 1 30 877 0.080 0.050 REMARK 3 19 E 1 30 F 1 30 864 0.110 0.050 REMARK 3 20 E 1 30 G 1 30 879 0.090 0.050 REMARK 3 21 F 1 30 G 1 30 816 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7NFJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292111574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.8.3-G908A951F-RELEASE REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32, XIA2 0.5.482 REMARK 200 -G030776D9-DIALS-1.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78107 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.190 REMARK 200 RESOLUTION RANGE LOW (A) : 45.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.89300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: MODEL HELICES REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AFTER 1:1 DILUTION WITH THE PEPTIDE REMARK 280 SOLUTION, THE RESULTING CONDITIONS WERE 50 MM SODIUM 2-[4-(2- REMARK 280 HYDROXYETHYL)PIPERAZIN-1-YL]ETHANESULFONATE (SODIUM HEPES), 5% W/ REMARK 280 V PEG 8000 AND 4% V/V ETHYLENE GLYCOL., PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 24.26950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.20800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.26950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.20800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ACE B 0 REMARK 465 NH2 B 31 REMARK 465 NH2 C 31 REMARK 465 NH2 D 31 REMARK 465 NH2 E 31 REMARK 465 NH2 F 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY B 30 C O REMARK 470 GLY D 30 CA C O REMARK 470 GLY F 30 O REMARK 470 LYS G 12 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 116 O HOH D 119 1.98 REMARK 500 OE2 GLU E 9 O HOH E 101 2.09 REMARK 500 OE1 GLU C 2 O ACE D 0 2.14 REMARK 500 OE1 GLN A 5 NZ LYS B 8 2.18 REMARK 500 OE1 GLN B 5 NZ LYS C 8 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 115 O HOH F 112 4455 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 23 CD GLU A 23 OE1 -0.098 REMARK 500 LYS C 22 N LYS C 22 CA 0.133 REMARK 500 GLU C 23 CD GLU C 23 OE2 -0.067 REMARK 500 GLU D 23 CD GLU D 23 OE2 -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 122 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH B 113 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH B 114 DISTANCE = 7.82 ANGSTROMS REMARK 525 HOH F 116 DISTANCE = 8.09 ANGSTROMS DBREF 7NFJ A 0 31 PDB 7NFJ 7NFJ 0 31 DBREF 7NFJ B 0 31 PDB 7NFJ 7NFJ 0 31 DBREF 7NFJ C 0 31 PDB 7NFJ 7NFJ 0 31 DBREF 7NFJ D 0 31 PDB 7NFJ 7NFJ 0 31 DBREF 7NFJ E 0 31 PDB 7NFJ 7NFJ 0 31 DBREF 7NFJ F 0 31 PDB 7NFJ 7NFJ 0 31 DBREF 7NFJ G 0 31 PDB 7NFJ 7NFJ 0 31 SEQRES 1 A 32 ACE GLY GLU ILE ALA GLN ALA LEU LYS GLU ILE ALA LYS SEQRES 2 A 32 ALA LEU LYS GLU ILE ALA TRP ALA LEU LYS GLU ILE ALA SEQRES 3 A 32 GLN ALA TYR LYS GLY NH2 SEQRES 1 B 32 ACE GLY GLU ILE ALA GLN ALA LEU LYS GLU ILE ALA LYS SEQRES 2 B 32 ALA LEU LYS GLU ILE ALA TRP ALA LEU LYS GLU ILE ALA SEQRES 3 B 32 GLN ALA TYR LYS GLY NH2 SEQRES 1 C 32 ACE GLY GLU ILE ALA GLN ALA LEU LYS GLU ILE ALA LYS SEQRES 2 C 32 ALA LEU LYS GLU ILE ALA TRP ALA LEU LYS GLU ILE ALA SEQRES 3 C 32 GLN ALA TYR LYS GLY NH2 SEQRES 1 D 32 ACE GLY GLU ILE ALA GLN ALA LEU LYS GLU ILE ALA LYS SEQRES 2 D 32 ALA LEU LYS GLU ILE ALA TRP ALA LEU LYS GLU ILE ALA SEQRES 3 D 32 GLN ALA TYR LYS GLY NH2 SEQRES 1 E 32 ACE GLY GLU ILE ALA GLN ALA LEU LYS GLU ILE ALA LYS SEQRES 2 E 32 ALA LEU LYS GLU ILE ALA TRP ALA LEU LYS GLU ILE ALA SEQRES 3 E 32 GLN ALA TYR LYS GLY NH2 SEQRES 1 F 32 ACE GLY GLU ILE ALA GLN ALA LEU LYS GLU ILE ALA LYS SEQRES 2 F 32 ALA LEU LYS GLU ILE ALA TRP ALA LEU LYS GLU ILE ALA SEQRES 3 F 32 GLN ALA TYR LYS GLY NH2 SEQRES 1 G 32 ACE GLY GLU ILE ALA GLN ALA LEU LYS GLU ILE ALA LYS SEQRES 2 G 32 ALA LEU LYS GLU ILE ALA TRP ALA LEU LYS GLU ILE ALA SEQRES 3 G 32 GLN ALA TYR LYS GLY NH2 HET ACE A 0 3 HET NH2 A 31 1 HET ACE C 0 3 HET ACE D 0 3 HET ACE E 0 3 HET ACE F 0 3 HET ACE G 0 3 HET NH2 G 31 1 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP FORMUL 1 ACE 6(C2 H4 O) FORMUL 1 NH2 2(H2 N) FORMUL 8 HOH *110(H2 O) HELIX 1 AA1 GLY A 1 GLY A 30 1 30 HELIX 2 AA2 GLU B 2 GLY B 30 1 29 HELIX 3 AA3 GLY C 1 GLY C 30 1 30 HELIX 4 AA4 GLY D 1 LYS D 29 1 29 HELIX 5 AA5 GLY E 1 GLY E 30 1 30 HELIX 6 AA6 GLY F 1 GLY F 30 1 30 HELIX 7 AA7 GLY G 1 GLY G 30 1 30 LINK C ACE A 0 N GLY A 1 1555 1555 1.34 LINK C GLY A 30 N NH2 A 31 1555 1555 1.28 LINK C ACE C 0 N GLY C 1 1555 1555 1.36 LINK C ACE D 0 N GLY D 1 1555 1555 1.31 LINK C ACE E 0 N GLY E 1 1555 1555 1.33 LINK C ACE F 0 N GLY F 1 1555 1555 1.34 LINK C ACE G 0 N GLY G 1 1555 1555 1.33 LINK C GLY G 30 N NH2 G 31 1555 1555 1.27 CRYST1 48.539 130.416 38.454 90.00 90.00 90.00 P 21 21 2 28 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020602 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026005 0.00000 HETATM 1 C ACE A 0 10.353 0.995 6.365 1.00 58.75 C ANISOU 1 C ACE A 0 7504 8589 6228 -927 -633 408 C HETATM 2 O ACE A 0 10.093 1.102 5.202 1.00 75.34 O ANISOU 2 O ACE A 0 10624 11889 6113 453 -1484 136 O HETATM 3 CH3 ACE A 0 9.231 1.035 7.395 1.00 54.27 C ANISOU 3 CH3 ACE A 0 4764 8321 7533 -2939 -915 1151 C