HEADER VIRAL PROTEIN 08-FEB-21 7NG6 TITLE CRYSTAL STRUCTURE OF MG-132 COVALENTLY BOUND TO THE MAIN PROTEASE TITLE 2 (3CLPRO/MPRO) OF SARS-COV-2 IN SPACEGROUP P1 IN ABSENCE OF DTT. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 5 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SARS-COV-2, MPRO, 3CLPRO, EXSCALATE4COV, DRUG DISCOVERY, ELETTRA, KEYWDS 2 VIRAL PROTEIN, MG-132 EXPDTA X-RAY DIFFRACTION AUTHOR E.COSTANZI,N.DEMITRI,B.GIABBAI,P.STORICI REVDAT 3 31-JAN-24 7NG6 1 REMARK REVDAT 2 24-NOV-21 7NG6 1 COMPND SOURCE JRNL REVDAT 1 07-APR-21 7NG6 0 JRNL AUTH E.COSTANZI,M.KUZIKOV,F.ESPOSITO,S.ALBANI,N.DEMITRI, JRNL AUTH 2 B.GIABBAI,M.CAMASTA,E.TRAMONTANO,G.ROSSETTI,A.ZALIANI, JRNL AUTH 3 P.STORICI JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE DUAL INHIBITION JRNL TITL 2 OF MG-132 AGAINST SARS-COV-2 MAIN PROTEASE (MPRO/3CLPRO) AND JRNL TITL 3 HUMAN CATHEPSIN-L. JRNL REF INT J MOL SCI V. 22 2021 JRNL REFN ESSN 1422-0067 JRNL PMID 34769210 JRNL DOI 10.3390/IJMS222111779 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 42256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5700 - 4.6100 0.97 2684 145 0.1477 0.1973 REMARK 3 2 4.6100 - 3.6600 0.98 2719 120 0.1268 0.1420 REMARK 3 3 3.6600 - 3.2000 0.98 2731 132 0.1432 0.1989 REMARK 3 4 3.2000 - 2.9100 0.98 2701 155 0.1597 0.2202 REMARK 3 5 2.9100 - 2.7000 0.97 2672 153 0.1664 0.2008 REMARK 3 6 2.7000 - 2.5400 0.98 2719 147 0.1689 0.2096 REMARK 3 7 2.5400 - 2.4100 0.97 2684 155 0.1586 0.2051 REMARK 3 8 2.4100 - 2.3100 0.97 2658 159 0.1641 0.2275 REMARK 3 9 2.3100 - 2.2200 0.96 2663 130 0.1710 0.2352 REMARK 3 10 2.2200 - 2.1400 0.96 2663 130 0.1674 0.2072 REMARK 3 11 2.1400 - 2.0700 0.96 2704 145 0.1969 0.2177 REMARK 3 12 2.0700 - 2.0100 0.97 2655 139 0.2043 0.2482 REMARK 3 13 2.0100 - 1.9600 0.96 2645 129 0.2119 0.2893 REMARK 3 14 1.9600 - 1.9100 0.96 2649 152 0.2419 0.2719 REMARK 3 15 1.9100 - 1.8700 0.94 2596 122 0.2633 0.3246 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.208 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.017 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4895 REMARK 3 ANGLE : 0.954 6650 REMARK 3 CHIRALITY : 0.051 750 REMARK 3 PLANARITY : 0.009 864 REMARK 3 DIHEDRAL : 14.303 1766 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2168 0.6509 -19.0764 REMARK 3 T TENSOR REMARK 3 T11: 0.2871 T22: 0.2437 REMARK 3 T33: 0.2123 T12: 0.0091 REMARK 3 T13: -0.0198 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 4.1739 L22: 2.6444 REMARK 3 L33: 1.4863 L12: -3.3102 REMARK 3 L13: 1.9173 L23: -1.6306 REMARK 3 S TENSOR REMARK 3 S11: -0.3461 S12: -0.1362 S13: -0.0271 REMARK 3 S21: 0.2985 S22: 0.2363 S23: 0.0115 REMARK 3 S31: -0.3778 S32: -0.0724 S33: 0.1225 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9575 3.9731 -29.2111 REMARK 3 T TENSOR REMARK 3 T11: 0.1715 T22: 0.1837 REMARK 3 T33: 0.1533 T12: -0.0023 REMARK 3 T13: 0.0005 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.7119 L22: 2.7173 REMARK 3 L33: 2.4738 L12: -1.0382 REMARK 3 L13: 0.5042 L23: -0.6116 REMARK 3 S TENSOR REMARK 3 S11: -0.1744 S12: -0.0365 S13: 0.1724 REMARK 3 S21: 0.1260 S22: 0.1602 S23: 0.0549 REMARK 3 S31: -0.3582 S32: -0.2080 S33: 0.0147 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8186 -12.4841 -31.3079 REMARK 3 T TENSOR REMARK 3 T11: 0.1427 T22: 0.1973 REMARK 3 T33: 0.1585 T12: -0.0283 REMARK 3 T13: 0.0197 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 3.4785 L22: 1.5023 REMARK 3 L33: 1.1153 L12: -1.7944 REMARK 3 L13: 1.0873 L23: -0.6943 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: 0.1301 S13: -0.2330 REMARK 3 S21: -0.0346 S22: 0.0334 S23: 0.1449 REMARK 3 S31: 0.0001 S32: 0.0098 S33: -0.0754 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8446 -28.8582 -28.3909 REMARK 3 T TENSOR REMARK 3 T11: 0.2967 T22: 0.2395 REMARK 3 T33: 0.2869 T12: 0.0682 REMARK 3 T13: -0.0030 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 2.6253 L22: 2.0092 REMARK 3 L33: 5.3076 L12: -0.0926 REMARK 3 L13: -0.1559 L23: 1.4504 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: -0.0013 S13: -0.4763 REMARK 3 S21: 0.1168 S22: 0.1646 S23: -0.1015 REMARK 3 S31: 0.5666 S32: 0.3228 S33: -0.1490 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3669 -20.4405 -26.1462 REMARK 3 T TENSOR REMARK 3 T11: 0.1251 T22: 0.2160 REMARK 3 T33: 0.1470 T12: 0.0223 REMARK 3 T13: 0.0046 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 3.0712 L22: 1.6557 REMARK 3 L33: 2.9179 L12: -0.0923 REMARK 3 L13: -0.2078 L23: 0.5179 REMARK 3 S TENSOR REMARK 3 S11: -0.0458 S12: 0.0461 S13: -0.1121 REMARK 3 S21: 0.0469 S22: 0.0731 S23: -0.0981 REMARK 3 S31: 0.1311 S32: 0.3590 S33: -0.0161 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0628 0.7460 -11.6172 REMARK 3 T TENSOR REMARK 3 T11: 0.3334 T22: 0.2094 REMARK 3 T33: 0.1800 T12: 0.0147 REMARK 3 T13: -0.0270 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 3.9629 L22: 3.2644 REMARK 3 L33: 2.1660 L12: 2.7417 REMARK 3 L13: 1.5078 L23: 0.8263 REMARK 3 S TENSOR REMARK 3 S11: -0.2903 S12: -0.1582 S13: 0.1070 REMARK 3 S21: -0.0876 S22: 0.0856 S23: -0.0786 REMARK 3 S31: -0.5741 S32: -0.0532 S33: 0.1943 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5872 8.6311 0.1708 REMARK 3 T TENSOR REMARK 3 T11: 0.6280 T22: 0.4737 REMARK 3 T33: 0.4540 T12: -0.1998 REMARK 3 T13: -0.1623 T23: -0.0459 REMARK 3 L TENSOR REMARK 3 L11: 1.2933 L22: 6.3228 REMARK 3 L33: 4.0312 L12: 0.2572 REMARK 3 L13: -0.0242 L23: -0.3838 REMARK 3 S TENSOR REMARK 3 S11: -0.4157 S12: -0.0211 S13: 0.4808 REMARK 3 S21: 0.0939 S22: -0.1679 S23: -1.0746 REMARK 3 S31: -1.2114 S32: 1.0076 S33: 0.2066 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2879 8.6845 2.2925 REMARK 3 T TENSOR REMARK 3 T11: 0.6447 T22: 0.3500 REMARK 3 T33: 0.3069 T12: 0.0297 REMARK 3 T13: -0.1752 T23: -0.1443 REMARK 3 L TENSOR REMARK 3 L11: 1.0639 L22: 1.5503 REMARK 3 L33: 0.0264 L12: -0.4154 REMARK 3 L13: -0.0853 L23: -0.0613 REMARK 3 S TENSOR REMARK 3 S11: -0.2621 S12: -0.3399 S13: 0.3732 REMARK 3 S21: -0.1208 S22: -0.0832 S23: 0.1733 REMARK 3 S31: -0.7106 S32: -0.1151 S33: 0.0201 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3203 -5.8288 -6.9846 REMARK 3 T TENSOR REMARK 3 T11: 0.2039 T22: 0.2487 REMARK 3 T33: 0.1770 T12: -0.0023 REMARK 3 T13: -0.0072 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 2.0235 L22: 1.8649 REMARK 3 L33: 3.4527 L12: 0.3056 REMARK 3 L13: -0.2877 L23: -1.1144 REMARK 3 S TENSOR REMARK 3 S11: -0.0909 S12: -0.0790 S13: 0.0376 REMARK 3 S21: -0.0043 S22: 0.0137 S23: 0.0389 REMARK 3 S31: -0.2253 S32: -0.0635 S33: 0.1004 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7955 -2.8970 -1.3123 REMARK 3 T TENSOR REMARK 3 T11: 0.1729 T22: 0.2087 REMARK 3 T33: 0.1432 T12: 0.0167 REMARK 3 T13: -0.0114 T23: -0.0636 REMARK 3 L TENSOR REMARK 3 L11: 2.1068 L22: 2.9112 REMARK 3 L33: 3.8492 L12: 0.7549 REMARK 3 L13: 0.9115 L23: -0.7937 REMARK 3 S TENSOR REMARK 3 S11: -0.1323 S12: -0.2704 S13: 0.1263 REMARK 3 S21: 0.0919 S22: -0.0136 S23: 0.0717 REMARK 3 S31: -0.3657 S32: -0.1796 S33: 0.1175 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 186 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1309 -16.2682 -1.9164 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.3159 REMARK 3 T33: 0.1963 T12: -0.0013 REMARK 3 T13: 0.0372 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.9444 L22: 1.0066 REMARK 3 L33: 0.5119 L12: 1.1569 REMARK 3 L13: 0.3816 L23: -0.0557 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: -0.0290 S13: -0.1837 REMARK 3 S21: 0.0174 S22: 0.0523 S23: -0.1390 REMARK 3 S31: -0.0394 S32: 0.0747 S33: -0.1098 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 215 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0317 -29.2513 -2.1612 REMARK 3 T TENSOR REMARK 3 T11: 0.2627 T22: 0.2449 REMARK 3 T33: 0.2290 T12: 0.0020 REMARK 3 T13: 0.0297 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.7088 L22: 3.5710 REMARK 3 L33: 6.7787 L12: 0.9296 REMARK 3 L13: -1.8436 L23: -1.2904 REMARK 3 S TENSOR REMARK 3 S11: -0.2294 S12: 0.0164 S13: -0.2753 REMARK 3 S21: -0.1129 S22: 0.2053 S23: 0.0672 REMARK 3 S31: 0.7093 S32: -0.3729 S33: 0.0019 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 238 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1868 -18.1719 1.3770 REMARK 3 T TENSOR REMARK 3 T11: 0.1784 T22: 0.3394 REMARK 3 T33: 0.2057 T12: -0.0425 REMARK 3 T13: 0.0398 T23: 0.0730 REMARK 3 L TENSOR REMARK 3 L11: 1.5275 L22: 2.8489 REMARK 3 L33: 3.5969 L12: -0.3258 REMARK 3 L13: 0.8296 L23: 0.1961 REMARK 3 S TENSOR REMARK 3 S11: 0.0852 S12: -0.1415 S13: 0.2182 REMARK 3 S21: 0.1734 S22: -0.0028 S23: 0.0558 REMARK 3 S31: 0.0545 S32: -0.2922 S33: -0.0870 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 261 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5474 -29.2008 -3.5211 REMARK 3 T TENSOR REMARK 3 T11: 0.3190 T22: 0.2320 REMARK 3 T33: 0.2615 T12: -0.0133 REMARK 3 T13: 0.0598 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 7.3281 L22: 4.2142 REMARK 3 L33: 5.2157 L12: -2.5243 REMARK 3 L13: -2.4842 L23: 1.1775 REMARK 3 S TENSOR REMARK 3 S11: -0.3108 S12: -0.0454 S13: -0.6664 REMARK 3 S21: 0.0135 S22: 0.1968 S23: 0.1557 REMARK 3 S31: 0.7920 S32: -0.1075 S33: 0.1068 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 275 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5211 -15.1671 -10.7091 REMARK 3 T TENSOR REMARK 3 T11: 0.2213 T22: 0.3790 REMARK 3 T33: 0.1998 T12: -0.0407 REMARK 3 T13: 0.0378 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 2.3069 L22: 0.9652 REMARK 3 L33: 2.4393 L12: -0.4951 REMARK 3 L13: 0.1475 L23: -0.7572 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: 0.3636 S13: 0.0699 REMARK 3 S21: -0.1480 S22: -0.0847 S23: -0.0891 REMARK 3 S31: 0.0697 S32: -0.2714 S33: 0.1564 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NG6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292113919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42278 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 53.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BBE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MAGNESIUM ACETATE TETRAHYDRATE, REMARK 280 0.1M MES PH 6.5, 10% W/VPEG 10,000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 303 REMARK 465 THR A 304 REMARK 465 PHE A 305 REMARK 465 GLN A 306 REMARK 465 GLN B 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -132.74 49.71 REMARK 500 MET A 49 -15.60 -140.52 REMARK 500 ASN A 51 57.50 -148.55 REMARK 500 ASN A 84 -125.01 53.39 REMARK 500 TYR A 154 -105.73 48.46 REMARK 500 THR A 169 5.14 113.12 REMARK 500 GLN A 189 43.05 -85.71 REMARK 500 SER A 301 96.70 -163.68 REMARK 500 ASP B 33 -134.08 56.16 REMARK 500 ALA B 70 49.33 -95.37 REMARK 500 ASN B 84 -123.12 57.43 REMARK 500 TYR B 154 -110.17 57.33 REMARK 500 THR B 169 -13.23 120.95 REMARK 500 GLN B 189 49.47 -89.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1030 DISTANCE = 5.94 ANGSTROMS REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: N-[(BENZYLOXY)CARBONYL]-L-LEUCYL-N-[(2S)-1-HYDROXY- REMARK 630 4-METHYLPENTAN-2-YL]-L-LEUCINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 ALD A 701 REMARK 630 ALD B 401 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ LEU LEU DCL REMARK 630 DETAILS: NULL DBREF 7NG6 A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 DBREF 7NG6 B 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN HET ALD A 701 76 HET ACT A 702 7 HET CL A 703 1 HET ALD B 401 76 HETNAM ALD N-[(BENZYLOXY)CARBONYL]-L-LEUCYL-N-[(2S)-1-HYDROXY-4- HETNAM 2 ALD METHYLPENTAN-2-YL]-L-LEUCINAMIDE HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION FORMUL 3 ALD 2(C26 H43 N3 O5) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 CL CL 1- FORMUL 7 HOH *413(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 ASN A 53 LYS A 61 1 9 HELIX 4 AA4 SER A 62 PHE A 66 5 5 HELIX 5 AA5 ILE A 200 ASN A 214 1 15 HELIX 6 AA6 THR A 226 TYR A 237 1 12 HELIX 7 AA7 THR A 243 LEU A 250 1 8 HELIX 8 AA8 LEU A 250 GLY A 258 1 9 HELIX 9 AA9 ALA A 260 GLY A 275 1 16 HELIX 10 AB1 THR A 292 SER A 301 1 10 HELIX 11 AB2 SER B 10 GLY B 15 1 6 HELIX 12 AB3 HIS B 41 CYS B 44 5 4 HELIX 13 AB4 ASN B 53 ARG B 60 1 8 HELIX 14 AB5 SER B 62 HIS B 64 5 3 HELIX 15 AB6 ILE B 200 ASN B 214 1 15 HELIX 16 AB7 THR B 226 TYR B 237 1 12 HELIX 17 AB8 THR B 243 LEU B 250 1 8 HELIX 18 AB9 LEU B 250 GLY B 258 1 9 HELIX 19 AC1 ALA B 260 GLY B 275 1 16 HELIX 20 AC2 THR B 292 GLY B 302 1 11 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 LEU A 67 ALA A 70 -1 N VAL A 68 O LEU A 75 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N GLN A 19 O GLN A 69 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O VAL A 35 N LEU A 32 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N ILE A 78 O LYS A 90 SHEET 1 AA2 5 TYR A 101 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 LEU A 167 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N ASP A 153 O CYS A 156 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O CYS A 128 N PHE A 112 SHEET 1 AA3 3 TYR A 101 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 LEU A 167 1 O PHE A 159 N LYS A 102 SHEET 3 AA3 3 VAL A 171 THR A 175 -1 O VAL A 171 N LEU A 167 SHEET 1 AA4 7 GLN B 74 LEU B 75 0 SHEET 2 AA4 7 PHE B 66 GLN B 69 -1 N VAL B 68 O LEU B 75 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O VAL B 35 N LEU B 32 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 89 N VAL B 36 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N GLN B 83 O VAL B 86 SHEET 1 AA5 5 LYS B 100 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 LEU B 167 1 O VAL B 157 N LYS B 100 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASP B 153 O CYS B 156 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O SER B 123 N ALA B 116 SHEET 1 AA6 3 LYS B 100 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 LEU B 167 1 O VAL B 157 N LYS B 100 SHEET 3 AA6 3 VAL B 171 THR B 175 -1 O VAL B 171 N LEU B 167 LINK SG CYS A 145 C22 ALD A 701 1555 1555 1.79 LINK SG CYS B 145 C22 ALD B 401 1555 1555 1.80 CRYST1 47.076 54.667 59.325 114.36 99.82 90.88 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021242 0.000325 0.004207 0.00000 SCALE2 0.000000 0.018295 0.008499 0.00000 SCALE3 0.000000 0.000000 0.018863 0.00000