HEADER SUGAR BINDING PROTEIN 22-FEB-21 7NL6 TITLE CRYSTAL STRUCTURE OF DC-SIGN IN COMPLEX WITH A TRIAZOLE-BASED TITLE 2 GLYCOMIMETIC LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: DC-SIGN, CRD DOMAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER L,DENDRITIC CELL- COMPND 5 SPECIFIC ICAM-3-GRABBING NON-INTEGRIN 1,DC-SIGN,DC-SIGN1, CD209 COMPND 6 ANTIGEN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD209, CLEC4L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LECTIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.P.JAKOB,J.CRAMER,A.LAKKAICHI,B.ALIU,I.CATTANEO,S.KLEIN,X.JIANG, AUTHOR 2 S.RABBANI,O.SCHWARDT,B.ERNST,T.MAIER REVDAT 3 31-JAN-24 7NL6 1 REMARK REVDAT 2 10-NOV-21 7NL6 1 JRNL REVDAT 1 27-OCT-21 7NL6 0 JRNL AUTH J.CRAMER,A.LAKKAICHI,B.ALIU,R.P.JAKOB,S.KLEIN,I.CATTANEO, JRNL AUTH 2 X.JIANG,S.RABBANI,O.SCHWARDT,G.ZIMMER,M.CIANCAGLINI, JRNL AUTH 3 T.ABREU MOTA,T.MAIER,B.ERNST JRNL TITL SWEET DRUGS FOR BAD BUGS: A GLYCOMIMETIC STRATEGY AGAINST JRNL TITL 2 THE DC-SIGN-MEDIATED DISSEMINATION OF SARS-COV-2. JRNL REF J.AM.CHEM.SOC. V. 143 17465 2021 JRNL REFN ESSN 1520-5126 JRNL PMID 34652144 JRNL DOI 10.1021/JACS.1C06778 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 8047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2620 - 3.1733 1.00 2646 129 0.1714 0.1876 REMARK 3 2 3.1733 - 2.5189 1.00 2544 109 0.2082 0.2622 REMARK 3 3 2.5189 - 2.2005 1.00 2476 143 0.2504 0.2958 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7581 -30.9285 3.2862 REMARK 3 T TENSOR REMARK 3 T11: 0.1768 T22: 0.1833 REMARK 3 T33: 0.2658 T12: -0.0072 REMARK 3 T13: -0.0035 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 4.0616 L22: 3.4516 REMARK 3 L33: 4.4131 L12: -0.7681 REMARK 3 L13: 1.5062 L23: 0.4555 REMARK 3 S TENSOR REMARK 3 S11: -0.0750 S12: -0.0744 S13: 0.3999 REMARK 3 S21: 0.0422 S22: -0.0158 S23: 0.1324 REMARK 3 S31: 0.0931 S32: -0.1491 S33: 0.0819 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 271 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7401 -23.2111 19.5692 REMARK 3 T TENSOR REMARK 3 T11: 0.1856 T22: 0.2160 REMARK 3 T33: 0.2406 T12: -0.0048 REMARK 3 T13: 0.0054 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.5039 L22: 1.9003 REMARK 3 L33: 1.6134 L12: 0.7977 REMARK 3 L13: 0.2658 L23: 0.5255 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: -0.1565 S13: 0.0528 REMARK 3 S21: 0.0973 S22: -0.0918 S23: 0.1481 REMARK 3 S31: -0.0233 S32: -0.0710 S33: 0.0524 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292114219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8051 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 42.262 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.29500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 1.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1SL4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.5% PEG 3350 AND 0.05M NH4NO3, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 664 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 678 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 690 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 698 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 700 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 229 REMARK 465 GLY A 230 REMARK 465 SER A 231 REMARK 465 SER A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 SER A 239 REMARK 465 SER A 240 REMARK 465 GLY A 241 REMARK 465 LEU A 242 REMARK 465 VAL A 243 REMARK 465 PRO A 244 REMARK 465 ARG A 245 REMARK 465 GLY A 246 REMARK 465 SER A 247 REMARK 465 HIS A 248 REMARK 465 MET A 249 REMARK 465 GLU A 250 REMARK 465 ARG A 251 REMARK 465 LEU A 252 REMARK 465 SER A 385 REMARK 465 ARG A 386 REMARK 465 ASP A 387 REMARK 465 GLU A 388 REMARK 465 GLU A 389 REMARK 465 GLN A 390 REMARK 465 PHE A 391 REMARK 465 LEU A 392 REMARK 465 SER A 393 REMARK 465 PRO A 394 REMARK 465 ALA A 395 REMARK 465 PRO A 396 REMARK 465 ALA A 397 REMARK 465 THR A 398 REMARK 465 PRO A 399 REMARK 465 ASN A 400 REMARK 465 PRO A 401 REMARK 465 PRO A 402 REMARK 465 PRO A 403 REMARK 465 ALA A 404 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 268 OE1 GLU A 299 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 353 85.76 54.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 320 OD1 REMARK 620 2 ASP A 320 OD2 47.6 REMARK 620 3 GLU A 324 OE1 104.8 92.2 REMARK 620 4 GLU A 324 OE2 113.2 71.2 47.0 REMARK 620 5 ASN A 350 OD1 153.0 159.3 80.5 90.0 REMARK 620 6 GLU A 354 O 96.9 122.1 145.4 143.1 68.5 REMARK 620 7 ASP A 355 OD1 72.3 116.3 83.4 130.4 82.3 77.9 REMARK 620 8 HOH A 635 O 107.7 75.2 119.6 73.5 91.5 77.4 155.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 324 OE1 REMARK 620 2 GLU A 353 OE2 74.0 REMARK 620 3 ASP A 355 OD1 81.8 86.8 REMARK 620 4 ASP A 355 OD2 126.3 108.9 46.2 REMARK 620 5 HOH A 619 O 99.0 170.2 99.0 80.7 REMARK 620 6 HOH A 662 O 80.0 77.1 158.5 153.6 95.2 REMARK 620 7 HOH A 677 O 155.1 97.2 121.7 78.5 86.4 75.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 347 OE1 REMARK 620 2 ASN A 349 OD1 72.3 REMARK 620 3 GLU A 354 OE1 143.2 71.3 REMARK 620 4 ASN A 365 OD1 75.5 146.5 141.2 REMARK 620 5 ASP A 366 O 138.1 130.9 67.9 80.5 REMARK 620 6 ASP A 366 OD1 76.1 87.7 97.0 93.6 71.7 REMARK 620 7 UH8 A 504 O3 73.9 83.1 106.8 79.3 134.2 150.0 REMARK 620 8 UH8 A 504 O4 134.9 121.6 71.7 76.4 68.8 140.3 66.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UH8 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 505 DBREF 7NL6 A 250 404 UNP Q9NNX6 CD209_HUMAN 250 404 SEQADV 7NL6 MET A 229 UNP Q9NNX6 INITIATING METHIONINE SEQADV 7NL6 GLY A 230 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 SER A 231 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 SER A 232 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 HIS A 233 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 HIS A 234 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 HIS A 235 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 HIS A 236 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 HIS A 237 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 HIS A 238 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 SER A 239 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 SER A 240 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 GLY A 241 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 LEU A 242 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 VAL A 243 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 PRO A 244 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 ARG A 245 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 GLY A 246 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 SER A 247 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 HIS A 248 UNP Q9NNX6 EXPRESSION TAG SEQADV 7NL6 MET A 249 UNP Q9NNX6 EXPRESSION TAG SEQRES 1 A 176 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 176 LEU VAL PRO ARG GLY SER HIS MET GLU ARG LEU CYS HIS SEQRES 3 A 176 PRO CYS PRO TRP GLU TRP THR PHE PHE GLN GLY ASN CYS SEQRES 4 A 176 TYR PHE MET SER ASN SER GLN ARG ASN TRP HIS ASP SER SEQRES 5 A 176 ILE THR ALA CYS LYS GLU VAL GLY ALA GLN LEU VAL VAL SEQRES 6 A 176 ILE LYS SER ALA GLU GLU GLN ASN PHE LEU GLN LEU GLN SEQRES 7 A 176 SER SER ARG SER ASN ARG PHE THR TRP MET GLY LEU SER SEQRES 8 A 176 ASP LEU ASN GLN GLU GLY THR TRP GLN TRP VAL ASP GLY SEQRES 9 A 176 SER PRO LEU LEU PRO SER PHE LYS GLN TYR TRP ASN ARG SEQRES 10 A 176 GLY GLU PRO ASN ASN VAL GLY GLU GLU ASP CYS ALA GLU SEQRES 11 A 176 PHE SER GLY ASN GLY TRP ASN ASP ASP LYS CYS ASN LEU SEQRES 12 A 176 ALA LYS PHE TRP ILE CYS LYS LYS SER ALA ALA SER CYS SEQRES 13 A 176 SER ARG ASP GLU GLU GLN PHE LEU SER PRO ALA PRO ALA SEQRES 14 A 176 THR PRO ASN PRO PRO PRO ALA HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET UH8 A 504 41 HET NO3 A 505 4 HETNAM CA CALCIUM ION HETNAM UH8 METHYL 2-DEOXY-2-(4-(PYRIDINE-3-YL))-1,2,3-TRIAZOL-1- HETNAM 2 UH8 YL)-ALPHA-D-MANNOPYRANOSIDE HETNAM NO3 NITRATE ION HETSYN UH8 (2~{R},3~{S},4~{R},5~{S},6~{S})-2-(HYDROXYMETHYL)-6- HETSYN 2 UH8 METHOXY-5-(4-PYRIDIN-3-YL-1,2,3-TRIAZOL-1-YL)OXANE-3, HETSYN 3 UH8 4-DIOL FORMUL 2 CA 3(CA 2+) FORMUL 5 UH8 C14 H18 N4 O5 FORMUL 6 NO3 N O3 1- FORMUL 7 HOH *100(H2 O) HELIX 1 AA1 ASN A 276 GLU A 286 1 11 HELIX 2 AA2 SER A 296 ASN A 311 1 16 HELIX 3 AA3 LEU A 336 TRP A 343 5 8 SHEET 1 AA1 5 THR A 261 PHE A 263 0 SHEET 2 AA1 5 ASN A 266 MET A 270 -1 O TYR A 268 N THR A 261 SHEET 3 AA1 5 PHE A 374 SER A 380 -1 O LYS A 379 N CYS A 267 SHEET 4 AA1 5 THR A 314 SER A 319 1 N TRP A 315 O PHE A 374 SHEET 5 AA1 5 GLN A 328 TRP A 329 -1 O GLN A 328 N SER A 319 SHEET 1 AA2 5 GLN A 290 LEU A 291 0 SHEET 2 AA2 5 PHE A 374 SER A 380 -1 O LYS A 378 N GLN A 290 SHEET 3 AA2 5 THR A 314 SER A 319 1 N TRP A 315 O PHE A 374 SHEET 4 AA2 5 CYS A 356 SER A 360 -1 O PHE A 359 N THR A 314 SHEET 5 AA2 5 GLY A 363 ASP A 367 -1 O GLY A 363 N SER A 360 SSBOND 1 CYS A 253 CYS A 384 1555 1555 2.04 SSBOND 2 CYS A 256 CYS A 267 1555 1555 2.06 SSBOND 3 CYS A 284 CYS A 377 1555 1555 2.05 SSBOND 4 CYS A 356 CYS A 369 1555 1555 2.05 LINK OD1 ASP A 320 CA CA A 501 1555 1555 2.88 LINK OD2 ASP A 320 CA CA A 501 1555 1555 2.47 LINK OE1 GLU A 324 CA CA A 501 1555 1555 2.55 LINK OE2 GLU A 324 CA CA A 501 1555 1555 2.91 LINK OE1 GLU A 324 CA CA A 503 1555 1555 2.61 LINK OE1 GLU A 347 CA CA A 502 1555 1555 2.60 LINK OD1 ASN A 349 CA CA A 502 1555 1555 2.37 LINK OD1 ASN A 350 CA CA A 501 1555 1555 2.72 LINK OE2 GLU A 353 CA CA A 503 1555 1555 2.53 LINK O GLU A 354 CA CA A 501 1555 1555 2.57 LINK OE1 GLU A 354 CA CA A 502 1555 1555 2.82 LINK OD1 ASP A 355 CA CA A 501 1555 1555 2.62 LINK OD1 ASP A 355 CA CA A 503 1555 1555 2.64 LINK OD2 ASP A 355 CA CA A 503 1555 1555 2.92 LINK OD1 ASN A 365 CA CA A 502 1555 1555 2.40 LINK O ASP A 366 CA CA A 502 1555 1555 2.54 LINK OD1 ASP A 366 CA CA A 502 1555 1555 2.33 LINK CA CA A 501 O HOH A 635 1555 1555 2.37 LINK CA CA A 502 O3 UH8 A 504 1555 1555 2.51 LINK CA CA A 502 O4 UH8 A 504 1555 1555 2.73 LINK CA CA A 503 O HOH A 619 1555 1555 2.35 LINK CA CA A 503 O HOH A 662 1555 1555 2.63 LINK CA CA A 503 O HOH A 677 1555 1555 2.66 CISPEP 1 GLU A 347 PRO A 348 0 -6.96 SITE 1 AC1 6 ASP A 320 GLU A 324 ASN A 350 GLU A 354 SITE 2 AC1 6 ASP A 355 HOH A 635 SITE 1 AC2 6 GLU A 347 ASN A 349 GLU A 354 ASN A 365 SITE 2 AC2 6 ASP A 366 UH8 A 504 SITE 1 AC3 6 GLU A 324 GLU A 353 ASP A 355 HOH A 619 SITE 2 AC3 6 HOH A 662 HOH A 677 SITE 1 AC4 12 PRO A 337 SER A 338 GLN A 341 GLU A 347 SITE 2 AC4 12 ASN A 349 GLU A 354 ASN A 365 ASP A 366 SITE 3 AC4 12 ASP A 367 LYS A 368 CA A 502 HOH A 643 SITE 1 AC5 3 SER A 271 ASN A 272 SER A 273 CRYST1 59.473 59.473 73.939 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016814 0.009708 0.000000 0.00000 SCALE2 0.000000 0.019416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013525 0.00000