HEADER CHAPERONE 22-FEB-21 7NL8 TITLE CRYSTAL STRUCTURE OF A SHORTENED IPGC VARIANT IN COMPLEX WITH 3- TITLE 2 METHYLBENZOHYDRAZIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN IPGC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: IPGC, IPPI, CP0129; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS IPGC, DIMER, CHAPERONE, SHIGELLA, MUTANT, MAGNESIUM, CHLORINE, 3- KEYWDS 2 METHYLBENZOHYDRAZIDE EXPDTA X-RAY DIFFRACTION AUTHOR M.GARDONYI,A.HEINE,G.KLEBE REVDAT 2 31-JAN-24 7NL8 1 REMARK REVDAT 1 02-MAR-22 7NL8 0 JRNL AUTH M.GARDONYI,A.HEINE,G.KLEBE JRNL TITL CRYSTAL STRUCTURE OF A SHORTENED IPGC VARIANT IN COMPLEX JRNL TITL 2 WITH 3-METHYLBENZOHYDRAZIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 42068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.9200 - 3.1100 0.99 2725 143 0.1792 0.2135 REMARK 3 2 3.1100 - 2.7200 1.00 2699 143 0.1946 0.2102 REMARK 3 3 2.7200 - 2.4700 1.00 2707 142 0.1907 0.2035 REMARK 3 4 2.4700 - 2.2900 1.00 2655 140 0.1773 0.2125 REMARK 3 5 2.2900 - 2.1600 1.00 2675 140 0.1783 0.2156 REMARK 3 6 2.1600 - 2.0500 1.00 2635 138 0.1869 0.2081 REMARK 3 7 2.0500 - 1.9600 1.00 2661 141 0.1863 0.2586 REMARK 3 8 1.9600 - 1.8800 1.00 2614 137 0.1932 0.2451 REMARK 3 9 1.8800 - 1.8200 1.00 2658 140 0.1973 0.2247 REMARK 3 10 1.8200 - 1.7600 1.00 2641 140 0.2184 0.2274 REMARK 3 11 1.7600 - 1.7100 1.00 2612 137 0.2182 0.2935 REMARK 3 12 1.7100 - 1.6700 1.00 2632 139 0.2310 0.2701 REMARK 3 13 1.6700 - 1.6300 1.00 2630 138 0.2463 0.2709 REMARK 3 14 1.6300 - 1.5900 0.98 2579 136 0.2618 0.3041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.167 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.741 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2285 REMARK 3 ANGLE : 0.719 3100 REMARK 3 CHIRALITY : 0.049 337 REMARK 3 PLANARITY : 0.005 410 REMARK 3 DIHEDRAL : 14.076 1357 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0187 40.6771 24.4463 REMARK 3 T TENSOR REMARK 3 T11: 0.3202 T22: 0.3155 REMARK 3 T33: 0.5061 T12: 0.1586 REMARK 3 T13: -0.1115 T23: -0.0557 REMARK 3 L TENSOR REMARK 3 L11: 1.5191 L22: 0.2979 REMARK 3 L33: 4.7188 L12: 0.5723 REMARK 3 L13: -0.8355 L23: -0.8344 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: -0.1829 S13: -0.0882 REMARK 3 S21: -0.4633 S22: -0.1811 S23: 0.8282 REMARK 3 S31: -0.8811 S32: -0.3403 S33: 0.0813 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6691 41.3391 20.8031 REMARK 3 T TENSOR REMARK 3 T11: 0.4003 T22: 0.3125 REMARK 3 T33: 0.2808 T12: 0.0206 REMARK 3 T13: -0.0528 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.0450 L22: 0.0835 REMARK 3 L33: 0.0494 L12: -0.0661 REMARK 3 L13: -0.0133 L23: 0.0663 REMARK 3 S TENSOR REMARK 3 S11: -0.2918 S12: -0.0370 S13: 0.1251 REMARK 3 S21: -0.0177 S22: 0.0430 S23: 0.4337 REMARK 3 S31: -0.5514 S32: -0.5813 S33: 0.0020 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3514 30.0303 18.8576 REMARK 3 T TENSOR REMARK 3 T11: 0.1972 T22: 0.3531 REMARK 3 T33: 0.2313 T12: -0.0054 REMARK 3 T13: -0.0146 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.2866 L22: 0.0368 REMARK 3 L33: 0.0661 L12: -0.1596 REMARK 3 L13: 0.1553 L23: -0.0767 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: 0.4634 S13: 0.1291 REMARK 3 S21: -0.0324 S22: -0.1834 S23: -0.0173 REMARK 3 S31: -0.0379 S32: 0.3528 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3071 29.6826 19.7210 REMARK 3 T TENSOR REMARK 3 T11: 0.1711 T22: 0.2438 REMARK 3 T33: 0.2024 T12: 0.0002 REMARK 3 T13: -0.0163 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.5554 L22: 0.5179 REMARK 3 L33: 0.5461 L12: 0.6474 REMARK 3 L13: 0.5183 L23: 0.6146 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.0015 S13: 0.0730 REMARK 3 S21: -0.0779 S22: -0.0106 S23: -0.0026 REMARK 3 S31: -0.0852 S32: 0.0193 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8504 17.2403 17.2451 REMARK 3 T TENSOR REMARK 3 T11: 0.1939 T22: 0.3141 REMARK 3 T33: 0.2600 T12: 0.0859 REMARK 3 T13: -0.0449 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.1992 L22: 0.2390 REMARK 3 L33: 0.2645 L12: 0.0161 REMARK 3 L13: -0.0604 L23: 0.2187 REMARK 3 S TENSOR REMARK 3 S11: -0.1995 S12: -0.2830 S13: 0.0691 REMARK 3 S21: 0.4220 S22: 0.2446 S23: -0.2298 REMARK 3 S31: 0.1021 S32: 0.3282 S33: -0.0606 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3891 14.4796 14.8895 REMARK 3 T TENSOR REMARK 3 T11: 0.2163 T22: 0.3301 REMARK 3 T33: 0.3693 T12: 0.0379 REMARK 3 T13: 0.0162 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 0.0648 L22: 0.1564 REMARK 3 L33: 0.0503 L12: -0.0447 REMARK 3 L13: 0.0044 L23: 0.0599 REMARK 3 S TENSOR REMARK 3 S11: -0.0954 S12: 0.2670 S13: -1.3779 REMARK 3 S21: 0.3729 S22: 0.1281 S23: 0.2871 REMARK 3 S31: 0.2637 S32: 0.4247 S33: -0.0011 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7335 20.0958 7.1651 REMARK 3 T TENSOR REMARK 3 T11: 0.1275 T22: 0.2666 REMARK 3 T33: 0.2411 T12: -0.0047 REMARK 3 T13: 0.0116 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 0.4338 L22: 0.2051 REMARK 3 L33: 1.5116 L12: -0.3415 REMARK 3 L13: 0.0247 L23: -0.3000 REMARK 3 S TENSOR REMARK 3 S11: -0.0507 S12: 0.1780 S13: -0.2658 REMARK 3 S21: 0.0035 S22: 0.0404 S23: -0.0224 REMARK 3 S31: -0.0246 S32: -0.0277 S33: -0.0484 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9796 17.5429 -2.3315 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.4102 REMARK 3 T33: 0.2892 T12: 0.0023 REMARK 3 T13: -0.0076 T23: -0.0880 REMARK 3 L TENSOR REMARK 3 L11: 0.2169 L22: 1.9441 REMARK 3 L33: 0.9290 L12: -0.6173 REMARK 3 L13: -0.3637 L23: 1.2713 REMARK 3 S TENSOR REMARK 3 S11: 0.2301 S12: 0.7014 S13: -0.2586 REMARK 3 S21: -0.7948 S22: -0.1590 S23: 0.1674 REMARK 3 S31: -0.1159 S32: -0.3602 S33: -0.0202 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9939 18.3202 -4.4332 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.3917 REMARK 3 T33: 0.3259 T12: 0.0345 REMARK 3 T13: 0.0574 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.5597 L22: 1.6629 REMARK 3 L33: 0.8370 L12: 0.0836 REMARK 3 L13: 0.1862 L23: 0.5978 REMARK 3 S TENSOR REMARK 3 S11: 0.0505 S12: 0.5378 S13: -0.1862 REMARK 3 S21: -0.8536 S22: -0.0117 S23: 0.0333 REMARK 3 S31: -0.1145 S32: 0.1452 S33: -0.0300 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1852 23.6725 22.2217 REMARK 3 T TENSOR REMARK 3 T11: 0.1846 T22: 0.3458 REMARK 3 T33: 0.2406 T12: -0.0227 REMARK 3 T13: 0.0199 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.1530 L22: 0.1808 REMARK 3 L33: 0.0212 L12: 0.1468 REMARK 3 L13: 0.0001 L23: -0.0496 REMARK 3 S TENSOR REMARK 3 S11: -0.0716 S12: -0.7010 S13: -0.4448 REMARK 3 S21: -0.1854 S22: 0.1567 S23: -0.1635 REMARK 3 S31: 0.3595 S32: -0.0361 S33: 0.0011 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0070 6.4210 23.5755 REMARK 3 T TENSOR REMARK 3 T11: 0.5675 T22: 0.4963 REMARK 3 T33: 0.4419 T12: 0.1828 REMARK 3 T13: 0.1086 T23: 0.0599 REMARK 3 L TENSOR REMARK 3 L11: 0.3365 L22: 0.3889 REMARK 3 L33: 0.5122 L12: -0.2065 REMARK 3 L13: -0.1305 L23: 0.4252 REMARK 3 S TENSOR REMARK 3 S11: -0.6829 S12: 0.0923 S13: -0.3614 REMARK 3 S21: -0.0542 S22: -0.3537 S23: 0.2966 REMARK 3 S31: 0.2998 S32: -0.1281 S33: -0.0310 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5515 14.7627 17.0389 REMARK 3 T TENSOR REMARK 3 T11: 0.3169 T22: 0.3382 REMARK 3 T33: 0.2131 T12: -0.0445 REMARK 3 T13: 0.0090 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 0.3818 L22: 0.2316 REMARK 3 L33: 0.3508 L12: 0.1692 REMARK 3 L13: -0.3355 L23: -0.0456 REMARK 3 S TENSOR REMARK 3 S11: -0.0664 S12: 0.3478 S13: -0.2202 REMARK 3 S21: -0.1423 S22: -0.0973 S23: 0.0851 REMARK 3 S31: 0.2849 S32: -0.3390 S33: -0.0006 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8076 19.3451 19.8801 REMARK 3 T TENSOR REMARK 3 T11: 0.2221 T22: 0.2597 REMARK 3 T33: 0.2103 T12: -0.0067 REMARK 3 T13: 0.0278 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.0287 L22: 0.1247 REMARK 3 L33: 0.3692 L12: -0.0601 REMARK 3 L13: -0.0243 L23: -0.2047 REMARK 3 S TENSOR REMARK 3 S11: 0.0628 S12: -0.0756 S13: -0.0382 REMARK 3 S21: -0.1397 S22: -0.0329 S23: -0.1645 REMARK 3 S31: 0.0723 S32: 0.0844 S33: -0.0001 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5353 25.4068 10.5640 REMARK 3 T TENSOR REMARK 3 T11: 0.2156 T22: 0.2337 REMARK 3 T33: 0.2110 T12: -0.0027 REMARK 3 T13: 0.0069 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.4667 L22: 0.2793 REMARK 3 L33: 0.6480 L12: -0.2208 REMARK 3 L13: -0.0594 L23: -0.5262 REMARK 3 S TENSOR REMARK 3 S11: -0.0483 S12: -0.0380 S13: 0.1038 REMARK 3 S21: -0.0075 S22: 0.0201 S23: -0.0342 REMARK 3 S31: 0.0723 S32: -0.0190 S33: 0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2861 16.8716 2.1291 REMARK 3 T TENSOR REMARK 3 T11: 0.4511 T22: 0.2916 REMARK 3 T33: 0.3475 T12: -0.0302 REMARK 3 T13: 0.0156 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 2.9293 L22: 0.1031 REMARK 3 L33: 1.0228 L12: -0.4044 REMARK 3 L13: 1.0147 L23: 0.0312 REMARK 3 S TENSOR REMARK 3 S11: 0.3379 S12: 0.8547 S13: -0.5075 REMARK 3 S21: 0.1885 S22: -0.2226 S23: 0.6236 REMARK 3 S31: 0.3107 S32: -0.0066 S33: 0.0046 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2149 32.0862 0.6320 REMARK 3 T TENSOR REMARK 3 T11: 0.2171 T22: 0.2361 REMARK 3 T33: 0.2137 T12: -0.0204 REMARK 3 T13: 0.0074 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: -0.0260 L22: 0.1807 REMARK 3 L33: 0.4858 L12: -0.1898 REMARK 3 L13: -0.0383 L23: 0.0853 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: 0.1058 S13: 0.0224 REMARK 3 S21: -0.1968 S22: -0.0297 S23: 0.0685 REMARK 3 S31: -0.2637 S32: -0.0500 S33: 0.0000 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6445 26.3281 -7.7687 REMARK 3 T TENSOR REMARK 3 T11: 0.3124 T22: 0.3348 REMARK 3 T33: 0.2551 T12: -0.0157 REMARK 3 T13: 0.0245 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.0705 L22: 0.0214 REMARK 3 L33: 0.0904 L12: 0.0193 REMARK 3 L13: -0.0180 L23: -0.0364 REMARK 3 S TENSOR REMARK 3 S11: 0.1916 S12: 0.3661 S13: 0.0947 REMARK 3 S21: -0.1911 S22: 0.0139 S23: -0.7483 REMARK 3 S31: -0.3547 S32: 0.4189 S33: 0.0000 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 135 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4865 27.7786 -9.1009 REMARK 3 T TENSOR REMARK 3 T11: 0.3513 T22: 0.2687 REMARK 3 T33: 0.2165 T12: 0.0460 REMARK 3 T13: -0.0217 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.2936 L22: 0.1847 REMARK 3 L33: 0.2366 L12: -0.0054 REMARK 3 L13: -0.2784 L23: 0.1679 REMARK 3 S TENSOR REMARK 3 S11: -0.0355 S12: 0.0357 S13: -0.1821 REMARK 3 S21: -0.2375 S22: -0.0366 S23: 0.2550 REMARK 3 S31: -0.1738 S32: -0.5437 S33: -0.0062 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 23 THROUGH 28 OR REMARK 3 RESID 30 THROUGH 33 OR (RESID 34 THROUGH REMARK 3 35 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 36 THROUGH REMARK 3 40 OR RESID 42 THROUGH 51 OR (RESID 52 REMARK 3 THROUGH 53 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 54 REMARK 3 THROUGH 72 OR RESID 74 THROUGH 97 OR REMARK 3 RESID 103 THROUGH 120 OR (RESID 121 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG OR NAME CD2)) OR REMARK 3 (RESID 122 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 CD )) OR RESID 123 OR (RESID 124 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG OR NAME CD OR NAME CE ) REMARK 3 ) OR (RESID 125 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 126 THROUGH 130 OR RESID 132 THROUGH 149)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 23 THROUGH 28 OR REMARK 3 RESID 30 THROUGH 40 OR RESID 42 THROUGH REMARK 3 43 OR (RESID 44 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 45 THROUGH 72 OR RESID 74 THROUGH 87 OR REMARK 3 (RESID 88 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 89 THROUGH 97 OR RESID 103 THROUGH REMARK 3 130 OR (RESID 132 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB OR NAME CG REMARK 3 OR NAME CD )) OR RESID 133 THROUGH 149)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292114247. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.02 REMARK 200 DATA SCALING SOFTWARE : XDS 1.02 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42121 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.80000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 7.0.047 REMARK 200 STARTING MODEL: 6SCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4000, 0.05 M TRIS (PH 7.0), REMARK 280 0.3 M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.34667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.17333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.17333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.34667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -28.76500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 49.82244 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.17333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 ILE A 11 REMARK 465 SER A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 ILE A 16 REMARK 465 ASP A 17 REMARK 465 ALA A 18 REMARK 465 ILE A 19 REMARK 465 ASN A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 GLN B 151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 28 CG1 CG2 CD1 REMARK 470 ASN A 29 OD1 ND2 REMARK 470 ASP A 34 OD1 OD2 REMARK 470 TYR A 44 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 49 CE NZ REMARK 470 GLU A 53 CD OE1 OE2 REMARK 470 GLN A 88 CD OE1 NE2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 ASN A 102 CG OD1 ND2 REMARK 470 LYS A 118 CE NZ REMARK 470 GLU A 125 CD OE1 OE2 REMARK 470 GLN A 132 OE1 NE2 REMARK 470 LYS A 138 CE NZ REMARK 470 SER B 21 OG REMARK 470 ILE B 28 CG1 CG2 CD1 REMARK 470 ASN B 29 OD1 ND2 REMARK 470 ASP B 34 CG OD1 OD2 REMARK 470 MET B 35 CG SD CE REMARK 470 LYS B 49 CE NZ REMARK 470 ILE B 52 CG1 CG2 CD1 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 LYS B 101 CD CE NZ REMARK 470 ASN B 102 CG OD1 ND2 REMARK 470 LYS B 118 CE NZ REMARK 470 LEU B 121 CD1 REMARK 470 LYS B 122 CE NZ REMARK 470 LYS B 124 NZ REMARK 470 GLU B 125 CG CD OE1 OE2 REMARK 470 LYS B 138 CE NZ REMARK 470 ILE B 150 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 101 -46.73 68.68 REMARK 500 SER B 21 0.11 57.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 375 O REMARK 620 2 HOH B 310 O 176.9 REMARK 620 3 HOH B 337 O 89.9 87.2 REMARK 620 4 HOH B 345 O 90.6 92.4 175.3 REMARK 620 5 HOH B 360 O 94.4 86.3 86.2 89.1 REMARK 620 6 HOH B 367 O 86.2 92.8 88.8 95.9 174.9 REMARK 620 N 1 2 3 4 5 DBREF 7NL8 A 10 151 UNP P0A2U4 IPGC_SHIFL 10 151 DBREF 7NL8 B 10 151 UNP P0A2U4 IPGC_SHIFL 10 151 SEQADV 7NL8 GLY A 9 UNP P0A2U4 EXPRESSION TAG SEQADV 7NL8 GLY B 9 UNP P0A2U4 EXPRESSION TAG SEQRES 1 A 143 GLY SER ILE SER THR ALA VAL ILE ASP ALA ILE ASN SER SEQRES 2 A 143 GLY ALA THR LEU LYS ASP ILE ASN ALA ILE PRO ASP ASP SEQRES 3 A 143 MET MET ASP ASP ILE TYR SER TYR ALA TYR ASP PHE TYR SEQRES 4 A 143 ASN LYS GLY ARG ILE GLU GLU ALA GLU VAL PHE PHE ARG SEQRES 5 A 143 PHE LEU CYS ILE TYR ASP PHE TYR ASN VAL ASP TYR ILE SEQRES 6 A 143 MET GLY LEU ALA ALA ILE TYR GLN ILE LYS GLU GLN PHE SEQRES 7 A 143 GLN GLN ALA ALA ASP LEU TYR ALA VAL ALA PHE ALA LEU SEQRES 8 A 143 GLY LYS ASN ASP TYR THR PRO VAL PHE HIS THR GLY GLN SEQRES 9 A 143 CYS GLN LEU ARG LEU LYS ALA PRO LEU LYS ALA LYS GLU SEQRES 10 A 143 CYS PHE GLU LEU VAL ILE GLN HIS SER ASN ASP GLU LYS SEQRES 11 A 143 LEU LYS ILE LYS ALA GLN SER TYR LEU ASP ALA ILE GLN SEQRES 1 B 143 GLY SER ILE SER THR ALA VAL ILE ASP ALA ILE ASN SER SEQRES 2 B 143 GLY ALA THR LEU LYS ASP ILE ASN ALA ILE PRO ASP ASP SEQRES 3 B 143 MET MET ASP ASP ILE TYR SER TYR ALA TYR ASP PHE TYR SEQRES 4 B 143 ASN LYS GLY ARG ILE GLU GLU ALA GLU VAL PHE PHE ARG SEQRES 5 B 143 PHE LEU CYS ILE TYR ASP PHE TYR ASN VAL ASP TYR ILE SEQRES 6 B 143 MET GLY LEU ALA ALA ILE TYR GLN ILE LYS GLU GLN PHE SEQRES 7 B 143 GLN GLN ALA ALA ASP LEU TYR ALA VAL ALA PHE ALA LEU SEQRES 8 B 143 GLY LYS ASN ASP TYR THR PRO VAL PHE HIS THR GLY GLN SEQRES 9 B 143 CYS GLN LEU ARG LEU LYS ALA PRO LEU LYS ALA LYS GLU SEQRES 10 B 143 CYS PHE GLU LEU VAL ILE GLN HIS SER ASN ASP GLU LYS SEQRES 11 B 143 LEU LYS ILE LYS ALA GLN SER TYR LEU ASP ALA ILE GLN HET CL A 201 1 HET CL A 202 1 HET DMS A 203 4 HET DMS A 204 4 HET PEG A 205 7 HET CL B 201 1 HET CL B 202 1 HET MG B 203 1 HET 45L B 204 11 HET PGE B 205 10 HETNAM CL CHLORIDE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MG MAGNESIUM ION HETNAM 45L 3-METHYLBENZOHYDRAZIDE HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 CL 4(CL 1-) FORMUL 5 DMS 2(C2 H6 O S) FORMUL 7 PEG C4 H10 O3 FORMUL 10 MG MG 2+ FORMUL 11 45L C8 H10 N2 O FORMUL 12 PGE C6 H14 O4 FORMUL 13 HOH *178(H2 O) HELIX 1 AA1 PRO A 32 LYS A 49 1 18 HELIX 2 AA2 ARG A 51 ASP A 66 1 16 HELIX 3 AA3 ASN A 69 LYS A 83 1 15 HELIX 4 AA4 GLN A 85 GLY A 100 1 16 HELIX 5 AA5 TYR A 104 LEU A 117 1 14 HELIX 6 AA6 ALA A 119 SER A 134 1 16 HELIX 7 AA7 ASP A 136 ILE A 150 1 15 HELIX 8 AA8 SER B 10 SER B 21 1 12 HELIX 9 AA9 LEU B 25 ASN B 29 5 5 HELIX 10 AB1 PRO B 32 LYS B 49 1 18 HELIX 11 AB2 ARG B 51 ASP B 66 1 16 HELIX 12 AB3 ASN B 69 LYS B 83 1 15 HELIX 13 AB4 GLN B 85 GLY B 100 1 16 HELIX 14 AB5 TYR B 104 LEU B 117 1 14 HELIX 15 AB6 ALA B 119 SER B 134 1 16 HELIX 16 AB7 ASP B 136 ALA B 149 1 14 LINK O HOH A 375 MG MG B 203 4455 1555 2.14 LINK MG MG B 203 O HOH B 310 1555 1555 2.24 LINK MG MG B 203 O HOH B 337 1555 1555 2.12 LINK MG MG B 203 O HOH B 345 1555 1555 2.18 LINK MG MG B 203 O HOH B 360 1555 1555 2.23 LINK MG MG B 203 O HOH B 367 1555 1555 2.03 CRYST1 57.530 57.530 159.520 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017382 0.010036 0.000000 0.00000 SCALE2 0.000000 0.020071 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006269 0.00000