HEADER TRANSFERASE 22-FEB-21 7NLF TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS ARGB IN APO FORM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLGLUTAMATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: N-ACETYL-L-GLUTAMATE 5-PHOSPHOTRANSFERASE,NAG KINASE,NAGK; COMPND 5 EC: 2.7.2.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: ARGB, RV1654, MTCY06H11.19; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ARGB ACETYLGLUTAMATE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.MENDES,S.E.THOMAS,J.CORY-WRIGHT,T.L.BLUNDELL REVDAT 2 31-JAN-24 7NLF 1 REMARK REVDAT 1 30-JUN-21 7NLF 0 JRNL AUTH P.GUPTA,S.E.THOMAS,S.A.ZAIDAN,M.A.PASILLAS,J.CORY-WRIGHT, JRNL AUTH 2 V.SEBASTIAN-PEREZ,A.BURGESS,E.CATTERMOLE,C.MEGHIR,C.ABELL, JRNL AUTH 3 A.G.COYNE,W.R.JACOBS,T.L.BLUNDELL,S.TIWARI,V.MENDES JRNL TITL A FRAGMENT-BASED APPROACH TO ASSESS THE LIGANDABILITY OF JRNL TITL 2 ARGB, ARGC, ARGD AND ARGF IN THE L-ARGININE BIOSYNTHETIC JRNL TITL 3 PATHWAY OF MYCOBACTERIUM TUBERCULOSIS JRNL REF COMPUT STRUCT BIOTECHNOL J V. 19 3491 2021 JRNL REFN ESSN 2001-0370 JRNL DOI 10.1016/J.CSBJ.2021.06.006 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.2150 - 4.3154 1.00 2753 151 0.1510 0.1773 REMARK 3 2 4.3154 - 3.4255 1.00 2683 150 0.1671 0.2016 REMARK 3 3 3.4255 - 2.9925 1.00 2680 139 0.2107 0.2541 REMARK 3 4 2.9925 - 2.7190 1.00 2662 136 0.2154 0.2494 REMARK 3 5 2.7190 - 2.5241 1.00 2665 146 0.2236 0.2703 REMARK 3 6 2.5241 - 2.3753 1.00 2682 129 0.2134 0.2763 REMARK 3 7 2.3753 - 2.2563 1.00 2644 143 0.2105 0.2388 REMARK 3 8 2.2563 - 2.1581 1.00 2653 131 0.2244 0.2659 REMARK 3 9 2.1581 - 2.0800 1.00 2671 117 0.2702 0.3026 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2166 REMARK 3 ANGLE : 0.881 2953 REMARK 3 CHIRALITY : 0.064 365 REMARK 3 PLANARITY : 0.006 380 REMARK 3 DIHEDRAL : 15.182 1278 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8775 2.9811 34.0737 REMARK 3 T TENSOR REMARK 3 T11: 0.4490 T22: 0.5388 REMARK 3 T33: 0.8880 T12: -0.0076 REMARK 3 T13: 0.0944 T23: 0.0906 REMARK 3 L TENSOR REMARK 3 L11: 5.8165 L22: 6.2633 REMARK 3 L33: 8.8342 L12: 2.2041 REMARK 3 L13: 3.8938 L23: 1.6858 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: 0.4903 S13: 0.4090 REMARK 3 S21: -0.2448 S22: 0.1178 S23: -1.0161 REMARK 3 S31: -0.2417 S32: 1.0743 S33: -0.0781 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3710 -14.0687 33.5212 REMARK 3 T TENSOR REMARK 3 T11: 0.4525 T22: 0.4094 REMARK 3 T33: 0.6752 T12: 0.0617 REMARK 3 T13: 0.0787 T23: 0.1502 REMARK 3 L TENSOR REMARK 3 L11: 5.6295 L22: 1.6146 REMARK 3 L33: 5.7794 L12: 2.8387 REMARK 3 L13: 1.6231 L23: 0.7575 REMARK 3 S TENSOR REMARK 3 S11: 0.1821 S12: -0.0417 S13: -0.1560 REMARK 3 S21: -0.0359 S22: -0.2432 S23: -0.4049 REMARK 3 S31: 0.2045 S32: 0.5210 S33: 0.0330 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2169 -34.0180 25.9641 REMARK 3 T TENSOR REMARK 3 T11: 0.4723 T22: 0.5187 REMARK 3 T33: 0.4314 T12: 0.1233 REMARK 3 T13: 0.0759 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 2.6387 L22: 3.6990 REMARK 3 L33: 1.0391 L12: -0.9351 REMARK 3 L13: 0.4459 L23: -0.2115 REMARK 3 S TENSOR REMARK 3 S11: 0.1192 S12: 0.5457 S13: 0.0845 REMARK 3 S21: -0.3147 S22: -0.0923 S23: -0.2279 REMARK 3 S31: 0.2003 S32: 0.1627 S33: -0.0785 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9076 -29.4966 34.3985 REMARK 3 T TENSOR REMARK 3 T11: 0.4775 T22: 0.3920 REMARK 3 T33: 0.5080 T12: 0.1161 REMARK 3 T13: 0.0060 T23: 0.1008 REMARK 3 L TENSOR REMARK 3 L11: 1.6066 L22: 7.8005 REMARK 3 L33: 7.8582 L12: 1.4529 REMARK 3 L13: 1.0749 L23: 7.7962 REMARK 3 S TENSOR REMARK 3 S11: 0.2063 S12: 0.0483 S13: -0.0458 REMARK 3 S21: 0.6735 S22: -0.2734 S23: -0.2167 REMARK 3 S31: 0.4919 S32: -0.1034 S33: 0.0151 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3254 -22.3941 23.1917 REMARK 3 T TENSOR REMARK 3 T11: 0.5091 T22: 0.5192 REMARK 3 T33: 0.5063 T12: 0.1615 REMARK 3 T13: 0.0618 T23: 0.0940 REMARK 3 L TENSOR REMARK 3 L11: 2.1390 L22: 3.7275 REMARK 3 L33: 2.4561 L12: 0.2774 REMARK 3 L13: 1.0270 L23: 0.2707 REMARK 3 S TENSOR REMARK 3 S11: 0.1183 S12: 0.4894 S13: 0.3261 REMARK 3 S21: -0.3423 S22: -0.1524 S23: 0.1385 REMARK 3 S31: 0.0032 S32: -0.0848 S33: 0.0093 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.3093 -16.3810 14.3951 REMARK 3 T TENSOR REMARK 3 T11: 0.7878 T22: 0.8994 REMARK 3 T33: 1.0749 T12: 0.1865 REMARK 3 T13: 0.1305 T23: 0.0915 REMARK 3 L TENSOR REMARK 3 L11: 3.6452 L22: 9.4431 REMARK 3 L33: 6.8181 L12: -4.4193 REMARK 3 L13: 0.9118 L23: 1.5654 REMARK 3 S TENSOR REMARK 3 S11: 0.2350 S12: 0.7136 S13: 0.2655 REMARK 3 S21: 0.1034 S22: -0.0267 S23: -0.3747 REMARK 3 S31: -1.0649 S32: 0.1140 S33: -0.2308 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7433 -15.7549 7.7579 REMARK 3 T TENSOR REMARK 3 T11: 1.0742 T22: 0.9157 REMARK 3 T33: 0.8100 T12: 0.0623 REMARK 3 T13: 0.3574 T23: 0.1753 REMARK 3 L TENSOR REMARK 3 L11: 8.1331 L22: 7.6835 REMARK 3 L33: 8.7685 L12: 1.3693 REMARK 3 L13: 2.5027 L23: 0.2566 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: 1.4885 S13: -0.2078 REMARK 3 S21: -0.8858 S22: -0.2272 S23: -1.2024 REMARK 3 S31: -0.4582 S32: 1.3138 S33: 0.2385 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8120 -19.0190 13.5831 REMARK 3 T TENSOR REMARK 3 T11: 1.0056 T22: 0.6165 REMARK 3 T33: 0.6690 T12: 0.0636 REMARK 3 T13: 0.1267 T23: 0.0515 REMARK 3 L TENSOR REMARK 3 L11: 4.3058 L22: 2.2145 REMARK 3 L33: 5.2485 L12: -3.0711 REMARK 3 L13: -0.8093 L23: 1.0144 REMARK 3 S TENSOR REMARK 3 S11: 0.2012 S12: 0.4777 S13: -0.5647 REMARK 3 S21: -2.1488 S22: 0.3053 S23: -0.0769 REMARK 3 S31: 0.7328 S32: 0.1857 S33: -0.4915 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9537 -9.3794 22.8559 REMARK 3 T TENSOR REMARK 3 T11: 0.5235 T22: 0.4852 REMARK 3 T33: 0.8312 T12: 0.1076 REMARK 3 T13: 0.1528 T23: 0.2104 REMARK 3 L TENSOR REMARK 3 L11: 3.2009 L22: 2.7658 REMARK 3 L33: 5.8483 L12: 1.1286 REMARK 3 L13: 0.9118 L23: 0.7870 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.2847 S13: 0.4185 REMARK 3 S21: -0.3843 S22: -0.1065 S23: -0.4478 REMARK 3 S31: -0.1431 S32: 0.6068 S33: 0.0703 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292114066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9865 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.23 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25346 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.075 REMARK 200 RESOLUTION RANGE LOW (A) : 86.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.92200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 2AP9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1260 MM AMMONIUM SULPHATE 100 MM CHES REMARK 280 PH 9.5 200 MM NACL, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 86.97500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.21504 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 24.09733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 86.97500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 50.21504 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.09733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 86.97500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 50.21504 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 24.09733 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 86.97500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 50.21504 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 24.09733 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 86.97500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 50.21504 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 24.09733 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 86.97500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 50.21504 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.09733 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 100.43008 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 48.19467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 100.43008 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 48.19467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 100.43008 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 48.19467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 100.43008 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 48.19467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 100.43008 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 48.19467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 100.43008 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 48.19467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 72.29200 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 72.29200 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 72.29200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 462 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 4 CG1 CG2 CD1 REMARK 470 ARG A 47 CZ NH1 NH2 REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 145 CG OD1 OD2 REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 239 CG CD OE1 NE2 REMARK 470 LYS A 290 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 108 -65.06 -132.17 REMARK 500 ASN A 118 2.32 -69.68 REMARK 500 ALA A 132 28.07 48.94 REMARK 500 ASP A 158 -73.11 -95.56 REMARK 500 ASP A 214 51.82 -94.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 DBREF 7NLF A 2 294 UNP P9WQ01 ARGB_MYCTU 2 294 SEQADV 7NLF GLY A -2 UNP P9WQ01 EXPRESSION TAG SEQADV 7NLF SER A -1 UNP P9WQ01 EXPRESSION TAG SEQADV 7NLF MET A 0 UNP P9WQ01 EXPRESSION TAG SEQADV 7NLF VAL A 1 UNP P9WQ01 EXPRESSION TAG SEQRES 1 A 297 GLY SER MET VAL SER ARG ILE GLU ALA LEU PRO THR HIS SEQRES 2 A 297 ILE LYS ALA GLN VAL LEU ALA GLU ALA LEU PRO TRP LEU SEQRES 3 A 297 LYS GLN LEU HIS GLY LYS VAL VAL VAL VAL LYS TYR GLY SEQRES 4 A 297 GLY ASN ALA MET THR ASP ASP THR LEU ARG ARG ALA PHE SEQRES 5 A 297 ALA ALA ASP MET ALA PHE LEU ARG ASN CYS GLY ILE HIS SEQRES 6 A 297 PRO VAL VAL VAL HIS GLY GLY GLY PRO GLN ILE THR ALA SEQRES 7 A 297 MET LEU ARG ARG LEU GLY ILE GLU GLY ASP PHE LYS GLY SEQRES 8 A 297 GLY PHE ARG VAL THR THR PRO GLU VAL LEU ASP VAL ALA SEQRES 9 A 297 ARG MET VAL LEU PHE GLY GLN VAL GLY ARG GLU LEU VAL SEQRES 10 A 297 ASN LEU ILE ASN ALA HIS GLY PRO TYR ALA VAL GLY ILE SEQRES 11 A 297 THR GLY GLU ASP ALA GLN LEU PHE THR ALA VAL ARG ARG SEQRES 12 A 297 SER VAL THR VAL ASP GLY VAL ALA THR ASP ILE GLY LEU SEQRES 13 A 297 VAL GLY ASP VAL ASP GLN VAL ASN THR ALA ALA MET LEU SEQRES 14 A 297 ASP LEU VAL ALA ALA GLY ARG ILE PRO VAL VAL SER THR SEQRES 15 A 297 LEU ALA PRO ASP ALA ASP GLY VAL VAL HIS ASN ILE ASN SEQRES 16 A 297 ALA ASP THR ALA ALA ALA ALA VAL ALA GLU ALA LEU GLY SEQRES 17 A 297 ALA GLU LYS LEU LEU MET LEU THR ASP ILE ASP GLY LEU SEQRES 18 A 297 TYR THR ARG TRP PRO ASP ARG ASP SER LEU VAL SER GLU SEQRES 19 A 297 ILE ASP THR GLY THR LEU ALA GLN LEU LEU PRO THR LEU SEQRES 20 A 297 GLU SER GLY MET VAL PRO LYS VAL GLU ALA CYS LEU ARG SEQRES 21 A 297 ALA VAL ILE GLY GLY VAL PRO SER ALA HIS ILE ILE ASP SEQRES 22 A 297 GLY ARG VAL THR HIS CYS VAL LEU VAL GLU LEU PHE THR SEQRES 23 A 297 ASP ALA GLY THR GLY THR LYS VAL VAL ARG GLY HET SO4 A 301 5 HET SO4 A 302 5 HET EDO A 303 4 HET EDO A 304 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *62(H2 O) HELIX 1 AA1 PRO A 8 GLU A 18 1 11 HELIX 2 AA2 ALA A 19 HIS A 27 1 9 HELIX 3 AA3 GLY A 37 ASP A 42 1 6 HELIX 4 AA4 ASP A 42 ASN A 58 1 17 HELIX 5 AA5 GLY A 69 LEU A 80 1 12 HELIX 6 AA6 THR A 94 GLN A 108 1 15 HELIX 7 AA7 GLN A 108 ASN A 118 1 11 HELIX 8 AA8 GLU A 130 GLN A 133 5 4 HELIX 9 AA9 ASN A 161 ALA A 171 1 11 HELIX 10 AB1 ASN A 192 GLY A 205 1 14 HELIX 11 AB2 ASP A 224 LEU A 228 5 5 HELIX 12 AB3 THR A 234 LEU A 241 1 8 HELIX 13 AB4 PRO A 242 LEU A 244 5 3 HELIX 14 AB5 MET A 248 GLY A 261 1 14 HELIX 15 AB6 HIS A 275 THR A 283 1 9 SHEET 1 AA1 8 ALA A 124 ILE A 127 0 SHEET 2 AA1 8 ILE A 174 SER A 178 1 O VAL A 176 N VAL A 125 SHEET 3 AA1 8 HIS A 62 HIS A 67 1 N VAL A 65 O VAL A 177 SHEET 4 AA1 8 VAL A 30 TYR A 35 1 N VAL A 33 O VAL A 64 SHEET 5 AA1 8 LYS A 208 THR A 213 1 O LEU A 210 N LYS A 34 SHEET 6 AA1 8 SER A 265 ASP A 270 1 O HIS A 267 N LEU A 209 SHEET 7 AA1 8 THR A 289 VAL A 292 -1 O VAL A 291 N ALA A 266 SHEET 8 AA1 8 GLU A 231 ASP A 233 1 N ILE A 232 O LYS A 290 SHEET 1 AA2 2 PHE A 86 LYS A 87 0 SHEET 2 AA2 2 PHE A 90 ARG A 91 -1 O PHE A 90 N LYS A 87 SHEET 1 AA3 4 PHE A 135 ARG A 139 0 SHEET 2 AA3 4 VAL A 154 VAL A 160 -1 O ASP A 158 N THR A 136 SHEET 3 AA3 4 VAL A 188 ILE A 191 1 O ASN A 190 N GLY A 155 SHEET 4 AA3 4 LEU A 180 PRO A 182 -1 N ALA A 181 O HIS A 189 SHEET 1 AA4 2 VAL A 142 VAL A 144 0 SHEET 2 AA4 2 VAL A 147 THR A 149 -1 O THR A 149 N VAL A 142 CISPEP 1 TRP A 222 PRO A 223 0 3.35 SITE 1 AC1 4 TRP A 22 LYS A 208 LYS A 290 HOH A 443 SITE 1 AC2 3 ARG A 78 PHE A 86 ARG A 91 SITE 1 AC3 2 THR A 93 ASN A 190 SITE 1 AC4 3 PRO A 122 ASN A 161 ARG A 173 CRYST1 173.950 173.950 72.292 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005749 0.003319 0.000000 0.00000 SCALE2 0.000000 0.006638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013833 0.00000