HEADER VIRUS LIKE PARTICLE 22-FEB-21 7NLH TITLE S. CEREVISIAE TY1 P22 RESTRICTION FACTOR, GAG CA-CTD, AUG1 VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TY1 GAG P22; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: GAG CA-CTD, AUG1 VARIANT,CAPSID PROTEIN,TY1 P22 RESTRICTION COMPND 5 FACTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: TY1A, GAG, TYA1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS RESTRICTION FACTOR, TY1, GAG, CA, VIRUS LIKE PARTICLE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.COTTEE,I.A.TAYLOR REVDAT 2 01-MAY-24 7NLH 1 REMARK REVDAT 1 06-OCT-21 7NLH 0 JRNL AUTH M.A.COTTEE,S.L.BECKWITH,S.C.LETHAM,S.J.KIM,G.R.YOUNG, JRNL AUTH 2 J.P.STOYE,D.J.GARFINKEL,I.A.TAYLOR JRNL TITL STRUCTURE OF A TY1 RESTRICTION FACTOR REVEALS THE MOLECULAR JRNL TITL 2 BASIS OF TRANSPOSITION COPY NUMBER CONTROL. JRNL REF NAT COMMUN V. 12 5590 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34552077 JRNL DOI 10.1038/S41467-021-25849-0 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 141.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1259 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1651 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3970 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2181 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 145.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.85000 REMARK 3 B22 (A**2) : 3.85000 REMARK 3 B33 (A**2) : -12.48000 REMARK 3 B12 (A**2) : 1.92000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.291 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.234 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.261 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.897 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2224 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2000 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3012 ; 1.287 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4633 ; 1.181 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 270 ; 6.374 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;32.347 ;23.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;17.331 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;12.969 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 305 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2518 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 463 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 261 349 B 261 349 2777 0.070 0.050 REMARK 3 2 A 261 350 C 261 350 2801 0.090 0.050 REMARK 3 3 B 261 349 C 261 349 2773 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 261 A 350 REMARK 3 ORIGIN FOR THE GROUP (A): 124.9868 30.5462 -18.5226 REMARK 3 T TENSOR REMARK 3 T11: 1.7982 T22: 0.3640 REMARK 3 T33: 1.0968 T12: 0.4906 REMARK 3 T13: 0.1537 T23: 0.1153 REMARK 3 L TENSOR REMARK 3 L11: 0.3697 L22: 0.1441 REMARK 3 L33: 1.0418 L12: 0.2044 REMARK 3 L13: -0.3451 L23: -0.0533 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: -0.0358 S13: -0.0944 REMARK 3 S21: -0.1451 S22: 0.0118 S23: -0.0301 REMARK 3 S31: -0.6899 S32: -0.1942 S33: -0.0417 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 261 B 351 REMARK 3 ORIGIN FOR THE GROUP (A): 126.2026 14.3240 -38.0438 REMARK 3 T TENSOR REMARK 3 T11: 1.3524 T22: 0.2712 REMARK 3 T33: 1.2112 T12: 0.1836 REMARK 3 T13: -0.0766 T23: 0.0866 REMARK 3 L TENSOR REMARK 3 L11: 2.6138 L22: 4.7318 REMARK 3 L33: 3.4003 L12: 1.1143 REMARK 3 L13: -2.4377 L23: -0.0854 REMARK 3 S TENSOR REMARK 3 S11: -0.0544 S12: 0.2459 S13: -0.3309 REMARK 3 S21: -0.4118 S22: 0.0321 S23: 0.1803 REMARK 3 S31: -0.3469 S32: -0.3942 S33: 0.0223 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 261 C 350 REMARK 3 ORIGIN FOR THE GROUP (A): 115.8494 57.8418 -13.1412 REMARK 3 T TENSOR REMARK 3 T11: 2.8281 T22: 0.7305 REMARK 3 T33: 1.1109 T12: 1.4250 REMARK 3 T13: 0.0435 T23: 0.0765 REMARK 3 L TENSOR REMARK 3 L11: 2.2951 L22: 9.3802 REMARK 3 L33: 6.0403 L12: -1.3890 REMARK 3 L13: -1.7577 L23: 7.3886 REMARK 3 S TENSOR REMARK 3 S11: 0.8074 S12: 0.3000 S13: -0.1563 REMARK 3 S21: -0.7920 S22: -0.5689 S23: -0.5189 REMARK 3 S31: -0.9074 S32: -0.5536 S33: -0.2385 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7NLH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292114116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.14.5 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 244.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 38.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 38.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: TY1 P22 AUG2 VARIANT PARTIAL MODEL REMARK 200 REMARK 200 REMARK: 160X160X160 HEXAGONAL PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300 NL PROTEIN (6.25 MG ML-1, IN 20 MM REMARK 280 TRIS-HCL PH 8.5, 150 MM NACL, 1 MM TCEP) 100 NL MOTHER LIQUOR REMARK 280 (1.16 M LI2SO4, 0.1 M TRIS-HCL PH 9.0) PH SCREENED 7.5-9.0, REMARK 280 LI2SO4 SCREENED 1.125M-1.25M., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.64467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.32233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.98350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 6.66117 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.30583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.64467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 13.32233 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 6.66117 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 19.98350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.30583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -6.66117 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 249 REMARK 465 LYS A 250 REMARK 465 ILE A 251 REMARK 465 LEU A 252 REMARK 465 SER A 253 REMARK 465 LYS A 254 REMARK 465 SER A 255 REMARK 465 ILE A 256 REMARK 465 GLU A 257 REMARK 465 LYS A 258 REMARK 465 MET A 259 REMARK 465 GLN A 260 REMARK 465 GLN A 351 REMARK 465 GLY A 352 REMARK 465 SER A 353 REMARK 465 ARG A 354 REMARK 465 ASN A 355 REMARK 465 PRO A 356 REMARK 465 LEU A 357 REMARK 465 GLU A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 MET B 249 REMARK 465 LYS B 250 REMARK 465 ILE B 251 REMARK 465 LEU B 252 REMARK 465 SER B 253 REMARK 465 LYS B 254 REMARK 465 SER B 255 REMARK 465 ILE B 256 REMARK 465 GLU B 257 REMARK 465 LYS B 258 REMARK 465 MET B 259 REMARK 465 GLN B 260 REMARK 465 GLY B 352 REMARK 465 SER B 353 REMARK 465 ARG B 354 REMARK 465 ASN B 355 REMARK 465 PRO B 356 REMARK 465 LEU B 357 REMARK 465 GLU B 358 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362 REMARK 465 HIS B 363 REMARK 465 HIS B 364 REMARK 465 MET C 249 REMARK 465 LYS C 250 REMARK 465 ILE C 251 REMARK 465 LEU C 252 REMARK 465 SER C 253 REMARK 465 LYS C 254 REMARK 465 SER C 255 REMARK 465 ILE C 256 REMARK 465 GLU C 257 REMARK 465 LYS C 258 REMARK 465 MET C 259 REMARK 465 GLN C 260 REMARK 465 GLN C 351 REMARK 465 GLY C 352 REMARK 465 SER C 353 REMARK 465 ARG C 354 REMARK 465 ASN C 355 REMARK 465 PRO C 356 REMARK 465 LEU C 357 REMARK 465 GLU C 358 REMARK 465 HIS C 359 REMARK 465 HIS C 360 REMARK 465 HIS C 361 REMARK 465 HIS C 362 REMARK 465 HIS C 363 REMARK 465 HIS C 364 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 328 -24.76 -16.06 REMARK 500 GLU A 349 34.57 -87.16 REMARK 500 ARG B 328 -23.70 -18.23 REMARK 500 ARG C 328 -25.76 -15.14 REMARK 500 GLU C 349 34.59 -87.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7NLI RELATED DB: PDB REMARK 900 DIFFERENT CONSTRUCT SAME LATTICE, SHARES RFREE SET REMARK 900 RELATED ID: 7NLG RELATED DB: PDB REMARK 900 DIFFERENT CONSTRUCT SAME LATTICE, SHARES RFREE SET DBREF 7NLH A 249 355 UNP P08405 TY1A_YEASX 249 355 DBREF 7NLH B 249 355 UNP P08405 TY1A_YEASX 249 355 DBREF 7NLH C 249 355 UNP P08405 TY1A_YEASX 249 355 SEQADV 7NLH PRO A 356 UNP P08405 EXPRESSION TAG SEQADV 7NLH LEU A 357 UNP P08405 EXPRESSION TAG SEQADV 7NLH GLU A 358 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS A 359 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS A 360 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS A 361 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS A 362 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS A 363 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS A 364 UNP P08405 EXPRESSION TAG SEQADV 7NLH PRO B 356 UNP P08405 EXPRESSION TAG SEQADV 7NLH LEU B 357 UNP P08405 EXPRESSION TAG SEQADV 7NLH GLU B 358 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS B 359 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS B 360 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS B 361 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS B 362 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS B 363 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS B 364 UNP P08405 EXPRESSION TAG SEQADV 7NLH PRO C 356 UNP P08405 EXPRESSION TAG SEQADV 7NLH LEU C 357 UNP P08405 EXPRESSION TAG SEQADV 7NLH GLU C 358 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS C 359 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS C 360 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS C 361 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS C 362 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS C 363 UNP P08405 EXPRESSION TAG SEQADV 7NLH HIS C 364 UNP P08405 EXPRESSION TAG SEQRES 1 A 116 MET LYS ILE LEU SER LYS SER ILE GLU LYS MET GLN SER SEQRES 2 A 116 ASP THR GLN GLU ALA ASN ASP ILE VAL THR LEU ALA ASN SEQRES 3 A 116 LEU GLN TYR ASN GLY SER THR PRO ALA ASP ALA PHE GLU SEQRES 4 A 116 THR LYS VAL THR ASN ILE ILE ASP ARG LEU ASN ASN ASN SEQRES 5 A 116 GLY ILE HIS ILE ASN ASN LYS VAL ALA CYS GLN LEU ILE SEQRES 6 A 116 MET ARG GLY LEU SER GLY GLU TYR LYS PHE LEU ARG TYR SEQRES 7 A 116 THR ARG HIS ARG HIS LEU ASN MET THR VAL ALA GLU LEU SEQRES 8 A 116 PHE LEU ASP ILE HIS ALA ILE TYR GLU GLU GLN GLN GLY SEQRES 9 A 116 SER ARG ASN PRO LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 116 MET LYS ILE LEU SER LYS SER ILE GLU LYS MET GLN SER SEQRES 2 B 116 ASP THR GLN GLU ALA ASN ASP ILE VAL THR LEU ALA ASN SEQRES 3 B 116 LEU GLN TYR ASN GLY SER THR PRO ALA ASP ALA PHE GLU SEQRES 4 B 116 THR LYS VAL THR ASN ILE ILE ASP ARG LEU ASN ASN ASN SEQRES 5 B 116 GLY ILE HIS ILE ASN ASN LYS VAL ALA CYS GLN LEU ILE SEQRES 6 B 116 MET ARG GLY LEU SER GLY GLU TYR LYS PHE LEU ARG TYR SEQRES 7 B 116 THR ARG HIS ARG HIS LEU ASN MET THR VAL ALA GLU LEU SEQRES 8 B 116 PHE LEU ASP ILE HIS ALA ILE TYR GLU GLU GLN GLN GLY SEQRES 9 B 116 SER ARG ASN PRO LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 116 MET LYS ILE LEU SER LYS SER ILE GLU LYS MET GLN SER SEQRES 2 C 116 ASP THR GLN GLU ALA ASN ASP ILE VAL THR LEU ALA ASN SEQRES 3 C 116 LEU GLN TYR ASN GLY SER THR PRO ALA ASP ALA PHE GLU SEQRES 4 C 116 THR LYS VAL THR ASN ILE ILE ASP ARG LEU ASN ASN ASN SEQRES 5 C 116 GLY ILE HIS ILE ASN ASN LYS VAL ALA CYS GLN LEU ILE SEQRES 6 C 116 MET ARG GLY LEU SER GLY GLU TYR LYS PHE LEU ARG TYR SEQRES 7 C 116 THR ARG HIS ARG HIS LEU ASN MET THR VAL ALA GLU LEU SEQRES 8 C 116 PHE LEU ASP ILE HIS ALA ILE TYR GLU GLU GLN GLN GLY SEQRES 9 C 116 SER ARG ASN PRO LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 AA1 THR A 263 ALA A 273 1 11 HELIX 2 AA2 PRO A 282 ASN A 300 1 19 HELIX 3 AA3 ASN A 305 ARG A 315 1 11 HELIX 4 AA4 SER A 318 LYS A 322 5 5 HELIX 5 AA5 PHE A 323 ARG A 328 1 6 HELIX 6 AA6 THR A 335 GLU A 349 1 15 HELIX 7 AA7 THR B 263 ALA B 273 1 11 HELIX 8 AA8 PRO B 282 ASN B 300 1 19 HELIX 9 AA9 ASN B 305 ARG B 315 1 11 HELIX 10 AB1 SER B 318 LYS B 322 5 5 HELIX 11 AB2 PHE B 323 ARG B 328 1 6 HELIX 12 AB3 THR B 335 GLN B 351 1 17 HELIX 13 AB4 THR C 263 ALA C 273 1 11 HELIX 14 AB5 PRO C 282 ASN C 300 1 19 HELIX 15 AB6 ASN C 305 ARG C 315 1 11 HELIX 16 AB7 SER C 318 LYS C 322 5 5 HELIX 17 AB8 PHE C 323 ARG C 328 1 6 HELIX 18 AB9 THR C 335 GLU C 349 1 15 CRYST1 282.124 282.124 39.967 90.00 90.00 120.00 P 65 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003545 0.002046 0.000000 0.00000 SCALE2 0.000000 0.004093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025021 0.00000