HEADER VIRUS LIKE PARTICLE 22-FEB-21 7NLI TITLE S. CEREVISIAE TY1 P22 RESTRICTION FACTOR, GAG CA-CTD, AUG2 VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TY1 GAG P22; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: GAG CA-CTD, AUG2 VARIANT,CAPSID PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: TY1A, GAG, TYA1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS RESTRICTION FACTOR, TY1, GAG, CA, VIRUS LIKE PARTICLE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.COTTEE,S.C.LETHAM,I.A.TAYLOR REVDAT 2 01-MAY-24 7NLI 1 REMARK REVDAT 1 06-OCT-21 7NLI 0 JRNL AUTH M.A.COTTEE,S.L.BECKWITH,S.C.LETHAM,S.J.KIM,G.R.YOUNG, JRNL AUTH 2 J.P.STOYE,D.J.GARFINKEL,I.A.TAYLOR JRNL TITL STRUCTURE OF A TY1 RESTRICTION FACTOR REVEALS THE MOLECULAR JRNL TITL 2 BASIS OF TRANSPOSITION COPY NUMBER CONTROL. JRNL REF NAT COMMUN V. 12 5590 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34552077 JRNL DOI 10.1038/S41467-021-25849-0 REMARK 2 REMARK 2 RESOLUTION. 3.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.460 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 91.9430 - 7.1396 1.00 2537 130 0.1816 0.1802 REMARK 3 2 7.1396 - 5.6672 1.00 2453 173 0.2292 0.2807 REMARK 3 3 5.6672 - 4.9509 1.00 2529 143 0.2171 0.2208 REMARK 3 4 4.9509 - 4.4982 1.00 2484 131 0.2005 0.2230 REMARK 3 5 4.4982 - 4.1758 1.00 2519 168 0.2106 0.2299 REMARK 3 6 4.1758 - 3.9296 1.00 2522 140 0.2181 0.2915 REMARK 3 7 3.9296 - 3.7328 1.00 2498 115 0.2730 0.2725 REMARK 3 8 3.7328 - 3.5703 1.00 2556 119 0.2733 0.3242 REMARK 3 9 3.5703 - 3.4328 1.00 2502 131 0.2952 0.3560 REMARK 3 10 3.4328 - 3.3144 1.00 2522 131 0.2956 0.3245 REMARK 3 11 3.3144 - 3.2107 1.00 2539 130 0.3333 0.3185 REMARK 3 12 3.2107 - 3.1190 1.00 2430 152 0.3396 0.3883 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 261 THROUGH 351) REMARK 3 ORIGIN FOR THE GROUP (A): 124.5922 30.4999 -18.1608 REMARK 3 T TENSOR REMARK 3 T11: 1.0721 T22: -0.0624 REMARK 3 T33: 0.3594 T12: 0.7413 REMARK 3 T13: 0.2269 T23: 0.4478 REMARK 3 L TENSOR REMARK 3 L11: 0.0334 L22: 0.0515 REMARK 3 L33: 0.0174 L12: -0.0197 REMARK 3 L13: 0.0104 L23: -0.0097 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: -0.0827 S13: 0.0328 REMARK 3 S21: 0.0094 S22: 0.0531 S23: 0.0973 REMARK 3 S31: 0.0024 S32: -0.0324 S33: -0.0674 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 261 THROUGH 352) REMARK 3 ORIGIN FOR THE GROUP (A): 125.0964 14.1681 -38.6563 REMARK 3 T TENSOR REMARK 3 T11: 1.0525 T22: -0.1522 REMARK 3 T33: 0.4924 T12: 0.2556 REMARK 3 T13: 0.0150 T23: 0.3397 REMARK 3 L TENSOR REMARK 3 L11: 0.0849 L22: 0.0180 REMARK 3 L33: 0.0129 L12: 0.0410 REMARK 3 L13: 0.0034 L23: 0.0024 REMARK 3 S TENSOR REMARK 3 S11: 0.1116 S12: -0.0028 S13: -0.2300 REMARK 3 S21: -0.0769 S22: 0.0926 S23: 0.1837 REMARK 3 S31: -0.1369 S32: -0.1047 S33: 0.0092 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 261 THROUGH 351) REMARK 3 ORIGIN FOR THE GROUP (A): 115.9011 57.8377 -13.6544 REMARK 3 T TENSOR REMARK 3 T11: 1.0239 T22: 0.1512 REMARK 3 T33: 0.4736 T12: 0.8844 REMARK 3 T13: -0.0939 T23: 0.2742 REMARK 3 L TENSOR REMARK 3 L11: 0.0235 L22: 0.0523 REMARK 3 L33: 0.0123 L12: 0.0224 REMARK 3 L13: 0.0052 L23: -0.0158 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: 0.0140 S13: -0.1157 REMARK 3 S21: -0.0297 S22: 0.0222 S23: 0.0268 REMARK 3 S31: -0.1281 S32: -0.0330 S33: -0.0178 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 261 THROUGH 302 OR REMARK 3 RESID 304 THROUGH 322 OR RESID 324 REMARK 3 THROUGH 351)) REMARK 3 SELECTION : (CHAIN B AND (RESID 261 THROUGH 302 OR REMARK 3 RESID 304 THROUGH 322 OR RESID 324 REMARK 3 THROUGH 351)) REMARK 3 ATOM PAIRS NUMBER : 753 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 261 THROUGH 302 OR REMARK 3 RESID 304 THROUGH 322 OR RESID 324 REMARK 3 THROUGH 351)) REMARK 3 SELECTION : (CHAIN C AND (RESID 261 THROUGH 302 OR REMARK 3 RESID 304 THROUGH 322 OR RESID 324 REMARK 3 THROUGH 351)) REMARK 3 ATOM PAIRS NUMBER : 753 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT CARRIED OUT USING PEAK REMARK 3 WAVELENGTH (0.97928 A) DATASET, WITH FRIEDEL PAIRS SEPARATED TO REMARK 3 ACCOUNT FOR ANOMALOUS SIGNAL. COLUMNS USED: F_PEAK(+), SIGF_ REMARK 3 PEAK(+), F_PEAK(-), SIGF_PEAK(-) OR I_PEAK(+), SIGI_PEAK(+), I_ REMARK 3 PEAK(-), SIGI_PEAK(-). EXPERIMENTALLY MEASURED F'=-8.15 AND F''= REMARK 3 6.44. REMARK 4 REMARK 4 7NLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292114115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97928, 0.97943, 0.97281 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.6.3 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24442 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.410 REMARK 200 RESOLUTION RANGE LOW (A) : 81.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 55.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 115.8 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXDE 2018/1 REMARK 200 STARTING MODEL: TY1 P22 REMARK 200 REMARK 200 REMARK: 80X80X250 UM HEXAGONAL PRISMIC ROD. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 260 NL PROTEIN (13.6 MG/ML IN 50 MM REMARK 280 SODIUM ACETATE PH 5.0, 300 MM NACL 1MM TCEP) 120 NL MOTHER REMARK 280 LIQUOR (27.9% GLYCEROL, 17.7% PEG 4K 0.1M HEPES PH 7.5) 20 NL REMARK 280 SEED SOLUTION (SEEDS IN 20% GLYCEROL, 31% PEG 4K 0.1M HEPES PH REMARK 280 7.5), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.93667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.46833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.20250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 6.73417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.67083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.93667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 13.46833 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 6.73417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 20.20250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.67083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -6.73417 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 259 REMARK 465 GLN A 260 REMARK 465 GLY A 352 REMARK 465 SER A 353 REMARK 465 ARG A 354 REMARK 465 ASN A 355 REMARK 465 PRO A 356 REMARK 465 LEU A 357 REMARK 465 GLU A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 MSE B 259 REMARK 465 GLN B 260 REMARK 465 SER B 353 REMARK 465 ARG B 354 REMARK 465 ASN B 355 REMARK 465 PRO B 356 REMARK 465 LEU B 357 REMARK 465 GLU B 358 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362 REMARK 465 HIS B 363 REMARK 465 HIS B 364 REMARK 465 MSE C 259 REMARK 465 GLN C 260 REMARK 465 GLY C 352 REMARK 465 SER C 353 REMARK 465 ARG C 354 REMARK 465 ASN C 355 REMARK 465 PRO C 356 REMARK 465 LEU C 357 REMARK 465 GLU C 358 REMARK 465 HIS C 359 REMARK 465 HIS C 360 REMARK 465 HIS C 361 REMARK 465 HIS C 362 REMARK 465 HIS C 363 REMARK 465 HIS C 364 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 351 78.28 -119.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7NLH RELATED DB: PDB REMARK 900 DIFFERENT CONSTRUCT SAME LATTICE, SHARES RFREE SET REMARK 900 RELATED ID: 7NLG RELATED DB: PDB REMARK 900 DIFFERENT CONSTRUCT SAME LATTICE, SHARES RFREE SET DBREF 7NLI A 259 355 UNP P08405 TY1A_YEASX 259 355 DBREF 7NLI B 259 355 UNP P08405 TY1A_YEASX 259 355 DBREF 7NLI C 259 355 UNP P08405 TY1A_YEASX 259 355 SEQADV 7NLI PRO A 356 UNP P08405 EXPRESSION TAG SEQADV 7NLI LEU A 357 UNP P08405 EXPRESSION TAG SEQADV 7NLI GLU A 358 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS A 359 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS A 360 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS A 361 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS A 362 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS A 363 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS A 364 UNP P08405 EXPRESSION TAG SEQADV 7NLI PRO B 356 UNP P08405 EXPRESSION TAG SEQADV 7NLI LEU B 357 UNP P08405 EXPRESSION TAG SEQADV 7NLI GLU B 358 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS B 359 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS B 360 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS B 361 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS B 362 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS B 363 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS B 364 UNP P08405 EXPRESSION TAG SEQADV 7NLI PRO C 356 UNP P08405 EXPRESSION TAG SEQADV 7NLI LEU C 357 UNP P08405 EXPRESSION TAG SEQADV 7NLI GLU C 358 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS C 359 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS C 360 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS C 361 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS C 362 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS C 363 UNP P08405 EXPRESSION TAG SEQADV 7NLI HIS C 364 UNP P08405 EXPRESSION TAG SEQRES 1 A 106 MSE GLN SER ASP THR GLN GLU ALA ASN ASP ILE VAL THR SEQRES 2 A 106 LEU ALA ASN LEU GLN TYR ASN GLY SER THR PRO ALA ASP SEQRES 3 A 106 ALA PHE GLU THR LYS VAL THR ASN ILE ILE ASP ARG LEU SEQRES 4 A 106 ASN ASN ASN GLY ILE HIS ILE ASN ASN LYS VAL ALA CYS SEQRES 5 A 106 GLN LEU ILE MSE ARG GLY LEU SER GLY GLU TYR LYS PHE SEQRES 6 A 106 LEU ARG TYR THR ARG HIS ARG HIS LEU ASN MSE THR VAL SEQRES 7 A 106 ALA GLU LEU PHE LEU ASP ILE HIS ALA ILE TYR GLU GLU SEQRES 8 A 106 GLN GLN GLY SER ARG ASN PRO LEU GLU HIS HIS HIS HIS SEQRES 9 A 106 HIS HIS SEQRES 1 B 106 MSE GLN SER ASP THR GLN GLU ALA ASN ASP ILE VAL THR SEQRES 2 B 106 LEU ALA ASN LEU GLN TYR ASN GLY SER THR PRO ALA ASP SEQRES 3 B 106 ALA PHE GLU THR LYS VAL THR ASN ILE ILE ASP ARG LEU SEQRES 4 B 106 ASN ASN ASN GLY ILE HIS ILE ASN ASN LYS VAL ALA CYS SEQRES 5 B 106 GLN LEU ILE MSE ARG GLY LEU SER GLY GLU TYR LYS PHE SEQRES 6 B 106 LEU ARG TYR THR ARG HIS ARG HIS LEU ASN MSE THR VAL SEQRES 7 B 106 ALA GLU LEU PHE LEU ASP ILE HIS ALA ILE TYR GLU GLU SEQRES 8 B 106 GLN GLN GLY SER ARG ASN PRO LEU GLU HIS HIS HIS HIS SEQRES 9 B 106 HIS HIS SEQRES 1 C 106 MSE GLN SER ASP THR GLN GLU ALA ASN ASP ILE VAL THR SEQRES 2 C 106 LEU ALA ASN LEU GLN TYR ASN GLY SER THR PRO ALA ASP SEQRES 3 C 106 ALA PHE GLU THR LYS VAL THR ASN ILE ILE ASP ARG LEU SEQRES 4 C 106 ASN ASN ASN GLY ILE HIS ILE ASN ASN LYS VAL ALA CYS SEQRES 5 C 106 GLN LEU ILE MSE ARG GLY LEU SER GLY GLU TYR LYS PHE SEQRES 6 C 106 LEU ARG TYR THR ARG HIS ARG HIS LEU ASN MSE THR VAL SEQRES 7 C 106 ALA GLU LEU PHE LEU ASP ILE HIS ALA ILE TYR GLU GLU SEQRES 8 C 106 GLN GLN GLY SER ARG ASN PRO LEU GLU HIS HIS HIS HIS SEQRES 9 C 106 HIS HIS MODRES 7NLI MSE A 314 MET MODIFIED RESIDUE MODRES 7NLI MSE A 334 MET MODIFIED RESIDUE MODRES 7NLI MSE B 314 MET MODIFIED RESIDUE MODRES 7NLI MSE B 334 MET MODIFIED RESIDUE MODRES 7NLI MSE C 314 MET MODIFIED RESIDUE MODRES 7NLI MSE C 334 MET MODIFIED RESIDUE HET MSE A 314 8 HET MSE A 334 8 HET MSE B 314 8 HET MSE B 334 8 HET MSE C 314 8 HET MSE C 334 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) HELIX 1 AA1 THR A 263 ASN A 274 1 12 HELIX 2 AA2 PRO A 282 ASN A 300 1 19 HELIX 3 AA3 ASN A 305 ARG A 315 1 11 HELIX 4 AA4 SER A 318 LYS A 322 5 5 HELIX 5 AA5 PHE A 323 ARG A 328 1 6 HELIX 6 AA6 THR A 335 GLN A 351 1 17 HELIX 7 AA7 THR B 263 ASN B 274 1 12 HELIX 8 AA8 PRO B 282 ASN B 300 1 19 HELIX 9 AA9 ASN B 305 ARG B 315 1 11 HELIX 10 AB1 SER B 318 LYS B 322 5 5 HELIX 11 AB2 PHE B 323 ARG B 328 1 6 HELIX 12 AB3 THR B 335 GLN B 350 1 16 HELIX 13 AB4 THR C 263 ASN C 274 1 12 HELIX 14 AB5 PRO C 282 ASN C 300 1 19 HELIX 15 AB6 ASN C 305 ARG C 315 1 11 HELIX 16 AB7 SER C 318 LYS C 322 5 5 HELIX 17 AB8 PHE C 323 ARG C 328 1 6 HELIX 18 AB9 THR C 335 GLN C 350 1 16 LINK C ILE A 313 N MSE A 314 1555 1555 1.33 LINK C MSE A 314 N ARG A 315 1555 1555 1.33 LINK C ASN A 333 N MSE A 334 1555 1555 1.33 LINK C MSE A 334 N THR A 335 1555 1555 1.33 LINK C ILE B 313 N MSE B 314 1555 1555 1.33 LINK C MSE B 314 N ARG B 315 1555 1555 1.33 LINK C ASN B 333 N MSE B 334 1555 1555 1.33 LINK C MSE B 334 N THR B 335 1555 1555 1.33 LINK C ILE C 313 N MSE C 314 1555 1555 1.33 LINK C MSE C 314 N ARG C 315 1555 1555 1.33 LINK C ASN C 333 N MSE C 334 1555 1555 1.33 LINK C MSE C 334 N THR C 335 1555 1555 1.33 CRYST1 280.890 280.890 40.405 90.00 90.00 120.00 P 65 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003560 0.002055 0.000000 0.00000 SCALE2 0.000000 0.004111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024749 0.00000