HEADER TRANSFERASE 22-FEB-21 7NLP TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS ARGB IN COMPLEX WITH TITLE 2 L-CANAVANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLGLUTAMATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: N-ACETYL-L-GLUTAMATE 5-PHOSPHOTRANSFERASE,NAG KINASE,NAGK; COMPND 5 EC: 2.7.2.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: ARGB, RV1654, MTCY06H11.19; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ARGB ACETYLGLUTAMATE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.MENDES,S.E.THOMAS,J.CORY-WRIGHT,T.L.BLUNDELL REVDAT 3 31-JAN-24 7NLP 1 REMARK REVDAT 2 15-NOV-23 7NLP 1 ATOM REVDAT 1 30-JUN-21 7NLP 0 JRNL AUTH P.GUPTA,S.E.THOMAS,S.A.ZAIDAN,M.A.PASILLAS,J.CORY-WRIGHT, JRNL AUTH 2 V.SEBASTIAN-PEREZ,A.BURGESS,E.CATTERMOLE,C.MEGHIR,C.ABELL, JRNL AUTH 3 A.G.COYNE,W.R.JACOBS,T.L.BLUNDELL,S.TIWARI,V.MENDES JRNL TITL A FRAGMENT-BASED APPROACH TO ASSESS THE LIGANDABILITY OF JRNL TITL 2 ARGB, ARGC, ARGD AND ARGF IN THE L-ARGININE BIOSYNTHETIC JRNL TITL 3 PATHWAY OF MYCOBACTERIUM TUBERCULOSIS JRNL REF COMPUT STRUCT BIOTECHNOL J V. 19 3491 2021 JRNL REFN ESSN 2001-0370 JRNL DOI 10.1016/J.CSBJ.2021.06.006 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 20398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.3460 - 4.2328 1.00 2888 141 0.1638 0.1980 REMARK 3 2 4.2328 - 3.3597 0.99 2756 156 0.1950 0.2199 REMARK 3 3 3.3597 - 2.9350 1.00 2790 147 0.2558 0.2659 REMARK 3 4 2.9350 - 2.6667 1.00 2809 139 0.2423 0.3201 REMARK 3 5 2.6667 - 2.4755 1.00 2781 122 0.2501 0.2887 REMARK 3 6 2.4755 - 2.3296 1.00 2794 140 0.2601 0.3310 REMARK 3 7 2.3296 - 2.2130 0.94 2599 136 0.3160 0.4002 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2151 REMARK 3 ANGLE : 1.014 2937 REMARK 3 CHIRALITY : 0.062 367 REMARK 3 PLANARITY : 0.006 378 REMARK 3 DIHEDRAL : 16.057 1265 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7784 2.6822 33.5260 REMARK 3 T TENSOR REMARK 3 T11: 0.5235 T22: 0.4480 REMARK 3 T33: 0.6764 T12: 0.0315 REMARK 3 T13: 0.0428 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 3.2645 L22: 7.8779 REMARK 3 L33: 7.9600 L12: 4.5956 REMARK 3 L13: 4.5733 L23: 4.6542 REMARK 3 S TENSOR REMARK 3 S11: 0.5360 S12: 0.6321 S13: 0.3972 REMARK 3 S21: 0.0692 S22: -0.0236 S23: -0.4249 REMARK 3 S31: 0.4079 S32: 0.8267 S33: -0.5057 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5232 -14.2210 33.2685 REMARK 3 T TENSOR REMARK 3 T11: 0.5144 T22: 0.3586 REMARK 3 T33: 0.7926 T12: 0.0053 REMARK 3 T13: -0.0301 T23: 0.0991 REMARK 3 L TENSOR REMARK 3 L11: 5.5316 L22: 1.6163 REMARK 3 L33: 7.1464 L12: 2.9890 REMARK 3 L13: 1.7069 L23: 1.0605 REMARK 3 S TENSOR REMARK 3 S11: 0.1494 S12: -0.0737 S13: -0.1658 REMARK 3 S21: 0.0992 S22: -0.1236 S23: -0.1797 REMARK 3 S31: 0.3842 S32: 0.1273 S33: 0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8617 -28.0430 25.8458 REMARK 3 T TENSOR REMARK 3 T11: 0.3315 T22: 0.4166 REMARK 3 T33: 0.5316 T12: 0.0367 REMARK 3 T13: 0.0020 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.5188 L22: 3.1310 REMARK 3 L33: 2.2475 L12: -0.4759 REMARK 3 L13: 0.1989 L23: 0.8415 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: 0.2917 S13: 0.0700 REMARK 3 S21: -0.1756 S22: -0.2041 S23: 0.1751 REMARK 3 S31: -0.0800 S32: -0.1539 S33: 0.2140 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7368 -16.1304 18.5511 REMARK 3 T TENSOR REMARK 3 T11: 0.6253 T22: 0.6061 REMARK 3 T33: 0.7710 T12: 0.0632 REMARK 3 T13: -0.0567 T23: 0.0791 REMARK 3 L TENSOR REMARK 3 L11: 3.2417 L22: 0.9249 REMARK 3 L33: 2.5513 L12: 0.7463 REMARK 3 L13: -1.9194 L23: 0.6264 REMARK 3 S TENSOR REMARK 3 S11: 0.1414 S12: 0.3201 S13: -0.0749 REMARK 3 S21: -0.3309 S22: -0.1634 S23: -0.2241 REMARK 3 S31: -0.0024 S32: 0.3197 S33: 0.0173 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0040 -10.8413 10.0702 REMARK 3 T TENSOR REMARK 3 T11: 0.9013 T22: 0.7590 REMARK 3 T33: 0.6973 T12: 0.0617 REMARK 3 T13: -0.0007 T23: 0.0888 REMARK 3 L TENSOR REMARK 3 L11: 2.2613 L22: 2.4669 REMARK 3 L33: 3.4749 L12: -1.4537 REMARK 3 L13: 0.4297 L23: 1.9819 REMARK 3 S TENSOR REMARK 3 S11: -0.4724 S12: 0.8947 S13: 0.3262 REMARK 3 S21: 0.4159 S22: 0.4506 S23: -0.9289 REMARK 3 S31: -0.5640 S32: -0.4697 S33: 0.0972 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7605 -19.1511 11.6007 REMARK 3 T TENSOR REMARK 3 T11: 1.0091 T22: 0.6767 REMARK 3 T33: 0.6793 T12: 0.1386 REMARK 3 T13: 0.0806 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 6.4313 L22: 1.9345 REMARK 3 L33: 5.3662 L12: -0.0282 REMARK 3 L13: -1.5170 L23: 0.1249 REMARK 3 S TENSOR REMARK 3 S11: 0.1471 S12: 0.7423 S13: -0.0506 REMARK 3 S21: -1.5918 S22: -0.3306 S23: -0.5812 REMARK 3 S31: 1.1600 S32: 0.2391 S33: 0.4720 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0001 -9.0485 22.8331 REMARK 3 T TENSOR REMARK 3 T11: 0.5295 T22: 0.4243 REMARK 3 T33: 0.6906 T12: 0.0742 REMARK 3 T13: 0.0096 T23: 0.1360 REMARK 3 L TENSOR REMARK 3 L11: 3.4723 L22: 4.0989 REMARK 3 L33: 5.3387 L12: 3.6126 REMARK 3 L13: 1.2458 L23: 2.4051 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.3817 S13: 0.5669 REMARK 3 S21: -0.2798 S22: 0.0238 S23: -0.1118 REMARK 3 S31: -0.1333 S32: 0.4097 S33: -0.1433 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NLP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292114240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20426 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 87.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 2AP9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1260 MM AMMONIUM SULPHATE 100 MM CHES REMARK 280 PH 9.5 200 MM NACL, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 87.02900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.24622 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 23.71800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 87.02900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 50.24622 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 23.71800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 87.02900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 50.24622 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 23.71800 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 87.02900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 50.24622 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 23.71800 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 87.02900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 50.24622 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 23.71800 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 87.02900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 50.24622 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 23.71800 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 100.49243 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 47.43600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 100.49243 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 47.43600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 100.49243 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 47.43600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 100.49243 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 47.43600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 100.49243 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 47.43600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 100.49243 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 47.43600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 71.15400 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 71.15400 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 71.15400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 302 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 4 CG1 CG2 CD1 REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 GLN A 14 CG CD OE1 NE2 REMARK 470 LYS A 87 NZ REMARK 470 GLN A 108 CD OE1 NE2 REMARK 470 ARG A 140 CD NE CZ NH1 NH2 REMARK 470 ARG A 221 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 226 CG OD1 OD2 REMARK 470 GLN A 239 CG CD OE1 NE2 REMARK 470 LEU A 240 CG CD1 CD2 REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 ARG A 257 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 108 -57.54 -132.74 REMARK 500 ASP A 158 -66.37 -90.66 REMARK 500 ASP A 214 42.62 -104.20 REMARK 500 PRO A 242 38.21 -71.35 REMARK 500 THR A 287 46.80 -146.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GGB A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 DBREF 7NLP A 2 294 UNP P9WQ01 ARGB_MYCTU 2 294 SEQADV 7NLP GLY A -2 UNP P9WQ01 EXPRESSION TAG SEQADV 7NLP SER A -1 UNP P9WQ01 EXPRESSION TAG SEQADV 7NLP MET A 0 UNP P9WQ01 EXPRESSION TAG SEQADV 7NLP VAL A 1 UNP P9WQ01 EXPRESSION TAG SEQRES 1 A 297 GLY SER MET VAL SER ARG ILE GLU ALA LEU PRO THR HIS SEQRES 2 A 297 ILE LYS ALA GLN VAL LEU ALA GLU ALA LEU PRO TRP LEU SEQRES 3 A 297 LYS GLN LEU HIS GLY LYS VAL VAL VAL VAL LYS TYR GLY SEQRES 4 A 297 GLY ASN ALA MET THR ASP ASP THR LEU ARG ARG ALA PHE SEQRES 5 A 297 ALA ALA ASP MET ALA PHE LEU ARG ASN CYS GLY ILE HIS SEQRES 6 A 297 PRO VAL VAL VAL HIS GLY GLY GLY PRO GLN ILE THR ALA SEQRES 7 A 297 MET LEU ARG ARG LEU GLY ILE GLU GLY ASP PHE LYS GLY SEQRES 8 A 297 GLY PHE ARG VAL THR THR PRO GLU VAL LEU ASP VAL ALA SEQRES 9 A 297 ARG MET VAL LEU PHE GLY GLN VAL GLY ARG GLU LEU VAL SEQRES 10 A 297 ASN LEU ILE ASN ALA HIS GLY PRO TYR ALA VAL GLY ILE SEQRES 11 A 297 THR GLY GLU ASP ALA GLN LEU PHE THR ALA VAL ARG ARG SEQRES 12 A 297 SER VAL THR VAL ASP GLY VAL ALA THR ASP ILE GLY LEU SEQRES 13 A 297 VAL GLY ASP VAL ASP GLN VAL ASN THR ALA ALA MET LEU SEQRES 14 A 297 ASP LEU VAL ALA ALA GLY ARG ILE PRO VAL VAL SER THR SEQRES 15 A 297 LEU ALA PRO ASP ALA ASP GLY VAL VAL HIS ASN ILE ASN SEQRES 16 A 297 ALA ASP THR ALA ALA ALA ALA VAL ALA GLU ALA LEU GLY SEQRES 17 A 297 ALA GLU LYS LEU LEU MET LEU THR ASP ILE ASP GLY LEU SEQRES 18 A 297 TYR THR ARG TRP PRO ASP ARG ASP SER LEU VAL SER GLU SEQRES 19 A 297 ILE ASP THR GLY THR LEU ALA GLN LEU LEU PRO THR LEU SEQRES 20 A 297 GLU SER GLY MET VAL PRO LYS VAL GLU ALA CYS LEU ARG SEQRES 21 A 297 ALA VAL ILE GLY GLY VAL PRO SER ALA HIS ILE ILE ASP SEQRES 22 A 297 GLY ARG VAL THR HIS CYS VAL LEU VAL GLU LEU PHE THR SEQRES 23 A 297 ASP ALA GLY THR GLY THR LYS VAL VAL ARG GLY HET GGB A 301 12 HET SO4 A 302 5 HETNAM GGB L-CANAVANINE HETNAM SO4 SULFATE ION HETSYN GGB L-2-AMINO-4-(GUANIDINOOXY)BUTYRIC ACID FORMUL 2 GGB C5 H12 N4 O3 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *11(H2 O) HELIX 1 AA1 PRO A 8 ALA A 19 1 12 HELIX 2 AA2 ALA A 19 HIS A 27 1 9 HELIX 3 AA3 GLY A 36 THR A 41 5 6 HELIX 4 AA4 ASP A 42 ASN A 58 1 17 HELIX 5 AA5 GLY A 69 LEU A 80 1 12 HELIX 6 AA6 THR A 94 GLN A 108 1 15 HELIX 7 AA7 GLN A 108 ASN A 118 1 11 HELIX 8 AA8 GLU A 130 GLN A 133 5 4 HELIX 9 AA9 ASN A 161 ALA A 171 1 11 HELIX 10 AB1 ASN A 192 GLY A 205 1 14 HELIX 11 AB2 ASP A 224 ASP A 226 5 3 HELIX 12 AB3 THR A 234 LEU A 241 1 8 HELIX 13 AB4 PRO A 242 LEU A 244 5 3 HELIX 14 AB5 MET A 248 GLY A 261 1 14 HELIX 15 AB6 HIS A 275 THR A 283 1 9 SHEET 1 AA1 8 ALA A 124 ILE A 127 0 SHEET 2 AA1 8 ILE A 174 SER A 178 1 O VAL A 176 N VAL A 125 SHEET 3 AA1 8 HIS A 62 HIS A 67 1 N VAL A 65 O VAL A 177 SHEET 4 AA1 8 VAL A 30 TYR A 35 1 N VAL A 33 O VAL A 64 SHEET 5 AA1 8 LYS A 208 THR A 213 1 O LEU A 210 N LYS A 34 SHEET 6 AA1 8 SER A 265 ASP A 270 1 O HIS A 267 N MET A 211 SHEET 7 AA1 8 GLY A 288 VAL A 292 -1 O VAL A 291 N ALA A 266 SHEET 8 AA1 8 GLU A 231 ASP A 233 1 N ILE A 232 O VAL A 292 SHEET 1 AA2 2 PHE A 86 LYS A 87 0 SHEET 2 AA2 2 PHE A 90 ARG A 91 -1 O PHE A 90 N LYS A 87 SHEET 1 AA3 4 PHE A 135 ARG A 139 0 SHEET 2 AA3 4 VAL A 154 VAL A 160 -1 O ASP A 158 N THR A 136 SHEET 3 AA3 4 VAL A 188 ILE A 191 1 O ASN A 190 N GLY A 155 SHEET 4 AA3 4 LEU A 180 PRO A 182 -1 N ALA A 181 O HIS A 189 SHEET 1 AA4 2 VAL A 142 VAL A 144 0 SHEET 2 AA4 2 VAL A 147 THR A 149 -1 O THR A 149 N VAL A 142 SHEET 1 AA5 2 LEU A 218 TYR A 219 0 SHEET 2 AA5 2 LEU A 228 VAL A 229 -1 O VAL A 229 N LEU A 218 CISPEP 1 TRP A 222 PRO A 223 0 10.45 SITE 1 AC1 13 TRP A 22 LYS A 208 SER A 230 HIS A 267 SITE 2 AC1 13 GLU A 280 LEU A 281 THR A 283 ASP A 284 SITE 3 AC1 13 ALA A 285 GLY A 286 GLY A 288 THR A 289 SITE 4 AC1 13 LYS A 290 SITE 1 AC2 3 ARG A 78 PHE A 86 ARG A 91 CRYST1 174.058 174.058 71.154 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005745 0.003317 0.000000 0.00000 SCALE2 0.000000 0.006634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014054 0.00000