HEADER TRANSFERASE 22-FEB-21 7NLR TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS ARGB IN COMPLEX WITH TITLE 2 2-PHENYL-1H-IMIDAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLGLUTAMATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: N-ACETYL-L-GLUTAMATE 5-PHOSPHOTRANSFERASE,NAG KINASE,NAGK; COMPND 5 EC: 2.7.2.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: ARGB, RV1654, MTCY06H11.19; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ARGB ACETYLGLUTAMATE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.MENDES,S.E.THOMAS,J.CORY-WRIGHT,T.L.BLUNDELL REVDAT 2 31-JAN-24 7NLR 1 REMARK REVDAT 1 30-JUN-21 7NLR 0 JRNL AUTH P.GUPTA,S.E.THOMAS,S.A.ZAIDAN,M.A.PASILLAS,J.CORY-WRIGHT, JRNL AUTH 2 V.SEBASTIAN-PEREZ,A.BURGESS,E.CATTERMOLE,C.MEGHIR,C.ABELL, JRNL AUTH 3 A.G.COYNE,W.R.JACOBS,T.L.BLUNDELL,S.TIWARI,V.MENDES JRNL TITL A FRAGMENT-BASED APPROACH TO ASSESS THE LIGANDABILITY OF JRNL TITL 2 ARGB, ARGC, ARGD AND ARGF IN THE L-ARGININE BIOSYNTHETIC JRNL TITL 3 PATHWAY OF MYCOBACTERIUM TUBERCULOSIS JRNL REF COMPUT STRUCT BIOTECHNOL J V. 19 3491 2021 JRNL REFN ESSN 2001-0370 JRNL DOI 10.1016/J.CSBJ.2021.06.006 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.650 REMARK 3 FREE R VALUE TEST SET COUNT : 921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.1900 - 4.3120 1.00 2796 114 0.1473 0.1552 REMARK 3 2 4.3120 - 3.4227 1.00 2715 128 0.1764 0.2167 REMARK 3 3 3.4227 - 2.9901 1.00 2704 130 0.2301 0.2646 REMARK 3 4 2.9901 - 2.7168 1.00 2667 131 0.2187 0.2649 REMARK 3 5 2.7168 - 2.5220 1.00 2680 138 0.2379 0.2887 REMARK 3 6 2.5220 - 2.3733 1.00 2681 145 0.2322 0.2695 REMARK 3 7 2.3733 - 2.2545 0.99 2627 135 0.2542 0.2949 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2181 REMARK 3 ANGLE : 0.908 2975 REMARK 3 CHIRALITY : 0.059 365 REMARK 3 PLANARITY : 0.006 384 REMARK 3 DIHEDRAL : 16.246 1284 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7220 3.1912 33.9043 REMARK 3 T TENSOR REMARK 3 T11: 0.5635 T22: 0.7747 REMARK 3 T33: 0.7821 T12: -0.0836 REMARK 3 T13: 0.1556 T23: 0.0597 REMARK 3 L TENSOR REMARK 3 L11: 4.0089 L22: 6.9237 REMARK 3 L33: 4.6555 L12: 0.2465 REMARK 3 L13: 4.1586 L23: 1.1546 REMARK 3 S TENSOR REMARK 3 S11: 0.2604 S12: 0.5532 S13: 0.9555 REMARK 3 S21: -0.2553 S22: -0.0875 S23: -0.8802 REMARK 3 S31: -0.3377 S32: 1.2562 S33: -0.1649 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6186 -15.7842 29.4546 REMARK 3 T TENSOR REMARK 3 T11: 0.5129 T22: 0.5433 REMARK 3 T33: 0.5401 T12: 0.1045 REMARK 3 T13: 0.1342 T23: 0.1707 REMARK 3 L TENSOR REMARK 3 L11: 6.9317 L22: 2.1253 REMARK 3 L33: 7.0973 L12: 3.3586 REMARK 3 L13: 3.4903 L23: 1.2700 REMARK 3 S TENSOR REMARK 3 S11: 0.4803 S12: 0.3774 S13: 0.0074 REMARK 3 S21: -0.5953 S22: -0.4676 S23: -0.5178 REMARK 3 S31: 0.5585 S32: 0.8236 S33: 0.0082 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2760 -12.8260 37.3340 REMARK 3 T TENSOR REMARK 3 T11: 0.5991 T22: 0.5696 REMARK 3 T33: 0.6840 T12: 0.0650 REMARK 3 T13: 0.0230 T23: 0.1532 REMARK 3 L TENSOR REMARK 3 L11: 7.0390 L22: 7.2138 REMARK 3 L33: 2.8345 L12: -2.1520 REMARK 3 L13: -0.0808 L23: 3.7319 REMARK 3 S TENSOR REMARK 3 S11: -0.0353 S12: -0.4065 S13: 0.1058 REMARK 3 S21: 0.7184 S22: -0.1786 S23: -0.3281 REMARK 3 S31: 0.1864 S32: 0.6683 S33: 0.1802 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1560 -34.1095 25.9966 REMARK 3 T TENSOR REMARK 3 T11: 0.5921 T22: 0.5826 REMARK 3 T33: 0.4532 T12: 0.1514 REMARK 3 T13: 0.0530 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.7965 L22: 3.1782 REMARK 3 L33: 0.0516 L12: -0.5148 REMARK 3 L13: 0.2022 L23: -0.6260 REMARK 3 S TENSOR REMARK 3 S11: 0.0652 S12: 0.3873 S13: 0.0320 REMARK 3 S21: -0.2587 S22: -0.0491 S23: -0.0552 REMARK 3 S31: 0.1077 S32: 0.1274 S33: -0.0359 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8493 -29.4922 34.5045 REMARK 3 T TENSOR REMARK 3 T11: 0.6298 T22: 0.4881 REMARK 3 T33: 0.4862 T12: 0.1537 REMARK 3 T13: 0.0165 T23: 0.0921 REMARK 3 L TENSOR REMARK 3 L11: 1.5516 L22: 7.8689 REMARK 3 L33: 7.8998 L12: 1.9021 REMARK 3 L13: 1.4948 L23: 7.5778 REMARK 3 S TENSOR REMARK 3 S11: 0.1286 S12: 0.1294 S13: -0.0376 REMARK 3 S21: 0.9351 S22: -0.3975 S23: 0.0062 REMARK 3 S31: 0.6952 S32: 0.0633 S33: 0.0871 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5788 -21.8202 29.8068 REMARK 3 T TENSOR REMARK 3 T11: 0.5820 T22: 0.4840 REMARK 3 T33: 0.5489 T12: 0.1366 REMARK 3 T13: 0.0391 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 3.0169 L22: 1.0508 REMARK 3 L33: 4.2601 L12: 1.7133 REMARK 3 L13: 1.8967 L23: 0.2364 REMARK 3 S TENSOR REMARK 3 S11: 0.1939 S12: 0.2344 S13: 0.1827 REMARK 3 S21: 0.1798 S22: -0.2653 S23: 0.0710 REMARK 3 S31: 0.5974 S32: -0.1171 S33: 0.0186 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9182 -31.2439 13.1568 REMARK 3 T TENSOR REMARK 3 T11: 0.9526 T22: 0.9288 REMARK 3 T33: 0.5417 T12: 0.2328 REMARK 3 T13: 0.0572 T23: 0.1470 REMARK 3 L TENSOR REMARK 3 L11: 2.7811 L22: 7.8070 REMARK 3 L33: 7.0817 L12: -0.0431 REMARK 3 L13: 3.2292 L23: 2.2562 REMARK 3 S TENSOR REMARK 3 S11: 0.5882 S12: 1.1439 S13: -0.3518 REMARK 3 S21: -2.3196 S22: -0.5710 S23: 0.3521 REMARK 3 S31: -0.2564 S32: 0.5004 S33: -0.2091 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8779 -18.8972 24.5857 REMARK 3 T TENSOR REMARK 3 T11: 0.5866 T22: 0.5603 REMARK 3 T33: 0.5529 T12: 0.1962 REMARK 3 T13: 0.0469 T23: 0.0765 REMARK 3 L TENSOR REMARK 3 L11: 1.5938 L22: 4.5738 REMARK 3 L33: 1.7366 L12: 1.1192 REMARK 3 L13: 0.1419 L23: -0.5924 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: 0.3654 S13: 0.3416 REMARK 3 S21: -0.0774 S22: 0.0880 S23: 0.3638 REMARK 3 S31: -0.1682 S32: -0.0861 S33: -0.0296 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.3975 -16.1344 14.4378 REMARK 3 T TENSOR REMARK 3 T11: 0.9962 T22: 1.2038 REMARK 3 T33: 1.0886 T12: 0.2301 REMARK 3 T13: 0.0910 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 5.5391 L22: 8.8882 REMARK 3 L33: 7.8594 L12: -4.0983 REMARK 3 L13: 0.9228 L23: 0.5021 REMARK 3 S TENSOR REMARK 3 S11: 0.2808 S12: 1.1040 S13: -0.5060 REMARK 3 S21: -0.1120 S22: -0.7715 S23: -0.6230 REMARK 3 S31: -0.9499 S32: 1.1561 S33: 0.5127 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7760 -15.7296 7.7309 REMARK 3 T TENSOR REMARK 3 T11: 1.3726 T22: 1.1002 REMARK 3 T33: 0.7565 T12: 0.1689 REMARK 3 T13: 0.3202 T23: 0.1848 REMARK 3 L TENSOR REMARK 3 L11: 4.4861 L22: 1.7098 REMARK 3 L33: 3.5851 L12: -0.1388 REMARK 3 L13: 0.2098 L23: 1.9327 REMARK 3 S TENSOR REMARK 3 S11: 0.0124 S12: 0.8588 S13: -0.1869 REMARK 3 S21: -1.4630 S22: -0.3581 S23: -1.0923 REMARK 3 S31: -0.0064 S32: 1.2904 S33: 0.3261 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8865 -18.7923 13.5752 REMARK 3 T TENSOR REMARK 3 T11: 1.1088 T22: 0.7232 REMARK 3 T33: 0.7707 T12: 0.1497 REMARK 3 T13: 0.1300 T23: 0.0711 REMARK 3 L TENSOR REMARK 3 L11: 5.5688 L22: 1.9908 REMARK 3 L33: 2.7310 L12: -2.3632 REMARK 3 L13: 1.3209 L23: -2.0589 REMARK 3 S TENSOR REMARK 3 S11: -0.1852 S12: 0.4626 S13: -1.0676 REMARK 3 S21: -1.2338 S22: 0.4929 S23: 0.3080 REMARK 3 S31: 1.0612 S32: -0.1082 S33: -0.4130 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0384 -9.2865 22.9996 REMARK 3 T TENSOR REMARK 3 T11: 0.6450 T22: 0.6041 REMARK 3 T33: 0.7574 T12: 0.1303 REMARK 3 T13: 0.0955 T23: 0.1758 REMARK 3 L TENSOR REMARK 3 L11: 2.1936 L22: 2.0641 REMARK 3 L33: 9.5657 L12: 2.1151 REMARK 3 L13: 1.6529 L23: 1.6881 REMARK 3 S TENSOR REMARK 3 S11: -0.1342 S12: 0.2694 S13: 0.2042 REMARK 3 S21: -0.4816 S22: 0.2078 S23: -0.1806 REMARK 3 S31: -0.4165 S32: 0.5350 S33: -0.0406 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NLR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292114243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19795 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 86.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.86100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 2AP9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1260 MM AMMONIUM SULPHATE 100 MM CHES REMARK 280 PH 9.5 200 MM NACL, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 86.90950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.17722 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 24.14400 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 86.90950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 50.17722 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.14400 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 86.90950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 50.17722 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 24.14400 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 86.90950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 50.17722 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 24.14400 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 86.90950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 50.17722 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 24.14400 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 86.90950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 50.17722 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.14400 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 100.35445 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 48.28800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 100.35445 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 48.28800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 100.35445 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 48.28800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 100.35445 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 48.28800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 100.35445 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 48.28800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 100.35445 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 48.28800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 64410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -232.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 72.43200 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 72.43200 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 72.43200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 4 CG1 CG2 CD1 REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 ASP A 145 CG OD1 OD2 REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 239 CG CD OE1 NE2 REMARK 470 LYS A 290 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 108 -59.68 -135.16 REMARK 500 ASN A 118 3.02 -67.51 REMARK 500 ASP A 145 -77.49 64.69 REMARK 500 ASP A 158 -84.09 -98.26 REMARK 500 ASP A 214 58.78 -98.62 REMARK 500 ALA A 285 35.32 -82.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PIY A 303 DBREF 7NLR A 2 294 UNP P9WQ01 ARGB_MYCTU 2 294 SEQADV 7NLR GLY A -2 UNP P9WQ01 EXPRESSION TAG SEQADV 7NLR SER A -1 UNP P9WQ01 EXPRESSION TAG SEQADV 7NLR MET A 0 UNP P9WQ01 EXPRESSION TAG SEQADV 7NLR VAL A 1 UNP P9WQ01 EXPRESSION TAG SEQRES 1 A 297 GLY SER MET VAL SER ARG ILE GLU ALA LEU PRO THR HIS SEQRES 2 A 297 ILE LYS ALA GLN VAL LEU ALA GLU ALA LEU PRO TRP LEU SEQRES 3 A 297 LYS GLN LEU HIS GLY LYS VAL VAL VAL VAL LYS TYR GLY SEQRES 4 A 297 GLY ASN ALA MET THR ASP ASP THR LEU ARG ARG ALA PHE SEQRES 5 A 297 ALA ALA ASP MET ALA PHE LEU ARG ASN CYS GLY ILE HIS SEQRES 6 A 297 PRO VAL VAL VAL HIS GLY GLY GLY PRO GLN ILE THR ALA SEQRES 7 A 297 MET LEU ARG ARG LEU GLY ILE GLU GLY ASP PHE LYS GLY SEQRES 8 A 297 GLY PHE ARG VAL THR THR PRO GLU VAL LEU ASP VAL ALA SEQRES 9 A 297 ARG MET VAL LEU PHE GLY GLN VAL GLY ARG GLU LEU VAL SEQRES 10 A 297 ASN LEU ILE ASN ALA HIS GLY PRO TYR ALA VAL GLY ILE SEQRES 11 A 297 THR GLY GLU ASP ALA GLN LEU PHE THR ALA VAL ARG ARG SEQRES 12 A 297 SER VAL THR VAL ASP GLY VAL ALA THR ASP ILE GLY LEU SEQRES 13 A 297 VAL GLY ASP VAL ASP GLN VAL ASN THR ALA ALA MET LEU SEQRES 14 A 297 ASP LEU VAL ALA ALA GLY ARG ILE PRO VAL VAL SER THR SEQRES 15 A 297 LEU ALA PRO ASP ALA ASP GLY VAL VAL HIS ASN ILE ASN SEQRES 16 A 297 ALA ASP THR ALA ALA ALA ALA VAL ALA GLU ALA LEU GLY SEQRES 17 A 297 ALA GLU LYS LEU LEU MET LEU THR ASP ILE ASP GLY LEU SEQRES 18 A 297 TYR THR ARG TRP PRO ASP ARG ASP SER LEU VAL SER GLU SEQRES 19 A 297 ILE ASP THR GLY THR LEU ALA GLN LEU LEU PRO THR LEU SEQRES 20 A 297 GLU SER GLY MET VAL PRO LYS VAL GLU ALA CYS LEU ARG SEQRES 21 A 297 ALA VAL ILE GLY GLY VAL PRO SER ALA HIS ILE ILE ASP SEQRES 22 A 297 GLY ARG VAL THR HIS CYS VAL LEU VAL GLU LEU PHE THR SEQRES 23 A 297 ASP ALA GLY THR GLY THR LYS VAL VAL ARG GLY HET SO4 A 301 5 HET SO4 A 302 5 HET PIY A 303 11 HETNAM SO4 SULFATE ION HETNAM PIY 2-PHENYL-1H-IMIDAZOLE FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 PIY C9 H8 N2 FORMUL 5 HOH *23(H2 O) HELIX 1 AA1 PRO A 8 GLU A 18 1 11 HELIX 2 AA2 ALA A 19 HIS A 27 1 9 HELIX 3 AA3 GLY A 37 ASP A 42 1 6 HELIX 4 AA4 ASP A 42 ASN A 58 1 17 HELIX 5 AA5 GLY A 69 LEU A 80 1 12 HELIX 6 AA6 THR A 94 GLN A 108 1 15 HELIX 7 AA7 GLN A 108 ASN A 118 1 11 HELIX 8 AA8 GLU A 130 GLN A 133 5 4 HELIX 9 AA9 ASN A 161 ALA A 171 1 11 HELIX 10 AB1 ASN A 192 GLY A 205 1 14 HELIX 11 AB2 ASP A 224 LEU A 228 5 5 HELIX 12 AB3 THR A 234 LEU A 241 1 8 HELIX 13 AB4 PRO A 242 LEU A 244 5 3 HELIX 14 AB5 GLY A 247 GLY A 261 1 15 HELIX 15 AB6 HIS A 275 THR A 283 1 9 SHEET 1 AA1 8 ALA A 124 ILE A 127 0 SHEET 2 AA1 8 ILE A 174 SER A 178 1 O VAL A 176 N VAL A 125 SHEET 3 AA1 8 HIS A 62 HIS A 67 1 N VAL A 65 O VAL A 177 SHEET 4 AA1 8 VAL A 30 TYR A 35 1 N TYR A 35 O VAL A 66 SHEET 5 AA1 8 LYS A 208 THR A 213 1 O LEU A 210 N LYS A 34 SHEET 6 AA1 8 SER A 265 ASP A 270 1 O HIS A 267 N MET A 211 SHEET 7 AA1 8 THR A 289 VAL A 292 -1 O VAL A 291 N ALA A 266 SHEET 8 AA1 8 GLU A 231 ASP A 233 1 N ILE A 232 O LYS A 290 SHEET 1 AA2 2 PHE A 86 LYS A 87 0 SHEET 2 AA2 2 PHE A 90 ARG A 91 -1 O PHE A 90 N LYS A 87 SHEET 1 AA3 4 PHE A 135 ARG A 139 0 SHEET 2 AA3 4 VAL A 154 VAL A 160 -1 O ASP A 158 N THR A 136 SHEET 3 AA3 4 VAL A 188 ILE A 191 1 O ASN A 190 N GLY A 155 SHEET 4 AA3 4 LEU A 180 PRO A 182 -1 N ALA A 181 O HIS A 189 SHEET 1 AA4 2 VAL A 142 VAL A 144 0 SHEET 2 AA4 2 VAL A 147 THR A 149 -1 O THR A 149 N VAL A 142 CISPEP 1 TRP A 222 PRO A 223 0 2.41 SITE 1 AC1 2 ARG A 78 PHE A 86 SITE 1 AC2 3 TRP A 22 LYS A 208 LYS A 290 SITE 1 AC3 3 VAL A 125 ILE A 127 LEU A 168 CRYST1 173.819 173.819 72.432 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005753 0.003322 0.000000 0.00000 SCALE2 0.000000 0.006643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013806 0.00000