HEADER TRANSCRIPTION 24-FEB-21 7NN6 TITLE PERIPLASMIC DOMAIN OF VIBRIO CHOLERAE TOXR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: TOXR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIBRIO CHOLERAE TRANCRIPTION FACTOR SENSORY DOMAIN, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.GUBENSAEK,G.E.WAGNER,K.ZANGGER REVDAT 2 30-JUN-21 7NN6 1 JRNL REVDAT 1 07-APR-21 7NN6 0 JRNL AUTH N.GUBENSAK,G.E.WAGNER,E.SCHRANK,F.S.FALSONE,T.M.I.BERGER, JRNL AUTH 2 T.PAVKOV-KELLER,J.REIDL,K.ZANGGER JRNL TITL THE PERIPLASMIC DOMAINS OF VIBRIOCHOLERAE TOXR AND TOXS ARE JRNL TITL 2 FORMING A STRONG HETERODIMERIC COMPLEX INDEPENDENT ON THE JRNL TITL 3 REDOX STATE OF TOXR CYSTEINES. JRNL REF MOL.MICROBIOL. V. 115 1277 2021 JRNL REFN ESSN 1365-2958 JRNL PMID 33368680 JRNL DOI 10.1111/MMI.14673 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292114288. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 400 UM [U-13C; U-15N] TOXRP, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HCCH-TOCSY; 3D HNCA; 3D REMARK 210 HNCACB; 3D HNCO; 3D HNCACO; 3D REMARK 210 HN(CO)CA; 3D H(CCO)NH; 3D 1H-13C REMARK 210 NOESY; 3D 1H-13C NOESY AROMATIC; REMARK 210 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, CCPNMR REMARK 210 ANALYSIS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 189 REMARK 465 ARG A 190 REMARK 465 GLY A 191 REMARK 465 SER A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 GLY A 199 REMARK 465 SER A 200 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 209 -55.99 -124.38 REMARK 500 1 ASP A 213 -3.73 75.09 REMARK 500 1 PRO A 224 -173.18 -69.73 REMARK 500 1 LEU A 226 51.41 -112.72 REMARK 500 1 SER A 274 -179.90 -174.78 REMARK 500 1 GLU A 276 -169.86 -125.86 REMARK 500 1 ASN A 277 -74.68 -116.21 REMARK 500 1 ILE A 278 147.19 -175.63 REMARK 500 1 LEU A 280 -74.43 -106.32 REMARK 500 1 VAL A 283 71.38 52.38 REMARK 500 1 ASN A 285 73.31 -168.61 REMARK 500 2 GLN A 203 67.05 62.65 REMARK 500 2 ASP A 213 -7.35 76.50 REMARK 500 2 ALA A 216 97.89 -59.43 REMARK 500 2 PRO A 224 -165.67 -69.79 REMARK 500 2 GLN A 259 58.34 -96.94 REMARK 500 2 ASN A 260 34.56 -142.83 REMARK 500 2 SER A 270 89.75 -156.90 REMARK 500 2 VAL A 273 50.48 -113.76 REMARK 500 2 PRO A 286 -179.97 -69.70 REMARK 500 2 CYS A 293 101.80 -55.68 REMARK 500 3 LEU A 209 -55.34 -122.07 REMARK 500 3 ASP A 213 -3.37 76.91 REMARK 500 3 ALA A 216 98.41 -62.74 REMARK 500 3 PRO A 224 -165.82 -69.80 REMARK 500 3 GLU A 272 -43.26 -137.60 REMARK 500 3 SER A 274 -74.50 -90.89 REMARK 500 3 ASN A 277 124.52 -175.55 REMARK 500 3 ALA A 284 -70.34 -90.73 REMARK 500 4 GLN A 203 55.35 -143.92 REMARK 500 4 LEU A 209 -54.72 -136.03 REMARK 500 4 ALA A 216 96.60 -60.94 REMARK 500 4 PRO A 224 -165.82 -69.79 REMARK 500 4 VAL A 273 -73.05 -71.54 REMARK 500 4 ASN A 277 136.89 -172.42 REMARK 500 4 ALA A 289 -75.49 -64.38 REMARK 500 5 GLN A 203 171.74 -58.32 REMARK 500 5 THR A 204 149.18 -175.26 REMARK 500 5 SER A 205 52.80 -93.39 REMARK 500 5 LEU A 209 -52.40 -129.13 REMARK 500 5 ALA A 216 96.73 -58.90 REMARK 500 5 PRO A 224 -177.31 -69.83 REMARK 500 5 SER A 270 -61.96 -174.56 REMARK 500 5 LEU A 280 -63.61 -105.68 REMARK 500 5 ASN A 285 68.60 -179.27 REMARK 500 5 ILE A 290 78.68 -101.87 REMARK 500 6 SER A 205 64.55 -109.39 REMARK 500 6 VAL A 212 -80.74 -50.94 REMARK 500 6 ALA A 216 97.49 -58.05 REMARK 500 6 PRO A 224 -170.69 -69.76 REMARK 500 REMARK 500 THIS ENTRY HAS 188 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34607 RELATED DB: BMRB REMARK 900 PERIPLASMIC DOMAIN OF VIBRIO CHOLERAE TOXR DBREF1 7NN6 A 201 294 UNP A0A2P1E022_VIBCL DBREF2 7NN6 A A0A2P1E022 201 294 SEQADV 7NN6 MET A 189 UNP A0A2P1E02 INITIATING METHIONINE SEQADV 7NN6 ARG A 190 UNP A0A2P1E02 EXPRESSION TAG SEQADV 7NN6 GLY A 191 UNP A0A2P1E02 EXPRESSION TAG SEQADV 7NN6 SER A 192 UNP A0A2P1E02 EXPRESSION TAG SEQADV 7NN6 HIS A 193 UNP A0A2P1E02 EXPRESSION TAG SEQADV 7NN6 HIS A 194 UNP A0A2P1E02 EXPRESSION TAG SEQADV 7NN6 HIS A 195 UNP A0A2P1E02 EXPRESSION TAG SEQADV 7NN6 HIS A 196 UNP A0A2P1E02 EXPRESSION TAG SEQADV 7NN6 HIS A 197 UNP A0A2P1E02 EXPRESSION TAG SEQADV 7NN6 HIS A 198 UNP A0A2P1E02 EXPRESSION TAG SEQADV 7NN6 GLY A 199 UNP A0A2P1E02 EXPRESSION TAG SEQADV 7NN6 SER A 200 UNP A0A2P1E02 EXPRESSION TAG SEQRES 1 A 106 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER PRO SEQRES 2 A 106 SER GLN THR SER PHE LYS PRO LEU THR VAL VAL ASP GLY SEQRES 3 A 106 VAL ALA VAL ASN MET PRO ASN ASN HIS PRO ASP LEU SER SEQRES 4 A 106 ASN TRP LEU PRO SER ILE GLU LEU CYS VAL LYS LYS TYR SEQRES 5 A 106 ASN GLU LYS HIS THR GLY GLY LEU LYS PRO ILE GLU VAL SEQRES 6 A 106 ILE ALA THR GLY GLY GLN ASN ASN GLN LEU THR LEU ASN SEQRES 7 A 106 TYR ILE HIS SER PRO GLU VAL SER GLY GLU ASN ILE THR SEQRES 8 A 106 LEU ARG ILE VAL ALA ASN PRO ASN ASP ALA ILE LYS VAL SEQRES 9 A 106 CYS GLU HELIX 1 AA1 ASN A 228 HIS A 244 1 17 HELIX 2 AA2 THR A 245 LYS A 249 5 5 SHEET 1 AA1 4 PHE A 206 VAL A 211 0 SHEET 2 AA1 4 ALA A 216 PRO A 220 -1 O VAL A 217 N THR A 210 SHEET 3 AA1 4 GLU A 252 ILE A 254 1 O VAL A 253 N ALA A 216 SHEET 4 AA1 4 TYR A 267 ILE A 268 -1 O ILE A 268 N GLU A 252 SSBOND 1 CYS A 236 CYS A 293 1555 1555 2.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1