HEADER SIGNALING PROTEIN 27-FEB-21 7NPO TITLE BRANCHED K48-K63-UB3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYUBIQUITIN-B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: POLYUBIQUITIN-B; COMPND 7 CHAIN: B, C; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UBB; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BRANCHED UBIQUITIN CHAINS, HETEROTYPIC UBIQUITIN CHAINS, K48-K63- KEYWDS 2 TRIUBIQUITIN, K48-K63-UB3, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.M.LANGE,D.KWASNA,Y.KULATHU REVDAT 2 31-JAN-24 7NPO 1 REMARK REVDAT 1 10-AUG-22 7NPO 0 JRNL AUTH S.M.LANGE,Y.KULATHU JRNL TITL BRANCHED LYS48-LYS63-LINKED TRIUBIQUITIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC4_4035 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 9862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.650 REMARK 3 FREE R VALUE TEST SET COUNT : 459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7300 - 3.1600 1.00 3133 187 0.1834 0.2520 REMARK 3 2 3.1600 - 2.5100 1.00 3149 132 0.2983 0.3715 REMARK 3 3 2.5100 - 2.1900 0.99 3121 140 0.3277 0.3611 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.325 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.051 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1766 REMARK 3 ANGLE : 0.566 2380 REMARK 3 CHIRALITY : 0.043 285 REMARK 3 PLANARITY : 0.006 308 REMARK 3 DIHEDRAL : 5.327 239 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 72 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5847 -8.3217 -5.9475 REMARK 3 T TENSOR REMARK 3 T11: 1.1111 T22: 0.7181 REMARK 3 T33: 1.3604 T12: 0.1117 REMARK 3 T13: -0.0545 T23: 0.1076 REMARK 3 L TENSOR REMARK 3 L11: 8.4076 L22: 9.2014 REMARK 3 L33: 3.6495 L12: -8.7064 REMARK 3 L13: -1.7259 L23: 2.0109 REMARK 3 S TENSOR REMARK 3 S11: 0.9021 S12: -0.5404 S13: -1.0044 REMARK 3 S21: 2.5334 S22: -1.1407 S23: 0.4449 REMARK 3 S31: -1.6680 S32: 0.1618 S33: 0.5939 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1953 6.3001 5.1822 REMARK 3 T TENSOR REMARK 3 T11: 0.3310 T22: 0.3640 REMARK 3 T33: 0.4641 T12: 0.0605 REMARK 3 T13: -0.0058 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 7.4497 L22: 8.9099 REMARK 3 L33: 8.0632 L12: 1.7809 REMARK 3 L13: 3.5746 L23: 4.1892 REMARK 3 S TENSOR REMARK 3 S11: -0.4837 S12: 1.1430 S13: -0.9433 REMARK 3 S21: -0.1130 S22: 0.7348 S23: -1.1704 REMARK 3 S31: 0.5369 S32: 1.0588 S33: -0.2236 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9860 4.5426 13.9783 REMARK 3 T TENSOR REMARK 3 T11: 0.4730 T22: 0.7841 REMARK 3 T33: 0.5450 T12: 0.1477 REMARK 3 T13: 0.0409 T23: 0.1656 REMARK 3 L TENSOR REMARK 3 L11: 2.8381 L22: 2.5550 REMARK 3 L33: 3.3457 L12: 0.6974 REMARK 3 L13: 2.8825 L23: -0.2598 REMARK 3 S TENSOR REMARK 3 S11: -0.1748 S12: -1.6446 S13: -0.9446 REMARK 3 S21: 0.8153 S22: 0.0151 S23: -0.2392 REMARK 3 S31: 1.0151 S32: 0.8214 S33: 0.2521 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9399 12.3166 16.8618 REMARK 3 T TENSOR REMARK 3 T11: 0.3460 T22: 0.7095 REMARK 3 T33: 0.5144 T12: -0.1039 REMARK 3 T13: -0.0301 T23: 0.0929 REMARK 3 L TENSOR REMARK 3 L11: 2.1506 L22: 8.3449 REMARK 3 L33: 2.2423 L12: 0.7531 REMARK 3 L13: -0.0256 L23: 4.2149 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: -0.8786 S13: 1.3057 REMARK 3 S21: 1.6665 S22: -0.4973 S23: 0.6206 REMARK 3 S31: 0.5020 S32: 0.5776 S33: 0.1731 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2871 12.6837 8.7009 REMARK 3 T TENSOR REMARK 3 T11: 0.2218 T22: 0.4328 REMARK 3 T33: 0.4966 T12: -0.0419 REMARK 3 T13: -0.0263 T23: 0.0999 REMARK 3 L TENSOR REMARK 3 L11: 4.1418 L22: 9.7264 REMARK 3 L33: 6.9551 L12: -0.8033 REMARK 3 L13: 1.3272 L23:2.3344066 REMARK 3 S TENSOR REMARK 3 S11: -0.3920 S12: -0.6506 S13: 0.0432 REMARK 3 S21: 0.6643 S22: 0.2400 S23: 0.6395 REMARK 3 S31: -0.0094 S32: 0.4412 S33: 0.1520 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8963 10.5820 4.0514 REMARK 3 T TENSOR REMARK 3 T11: 0.2509 T22: 0.4447 REMARK 3 T33: 0.2900 T12: -0.0324 REMARK 3 T13: 0.0293 T23: 0.1165 REMARK 3 L TENSOR REMARK 3 L11: 5.5755 L22: 8.8396 REMARK 3 L33: 3.4557 L12: -0.6605 REMARK 3 L13: 3.7741 L23: 1.5762 REMARK 3 S TENSOR REMARK 3 S11: 0.2397 S12: -0.3909 S13: -0.3001 REMARK 3 S21: -0.3287 S22: -0.1565 S23: 0.1665 REMARK 3 S31: -0.0292 S32: 0.0653 S33: -0.1775 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4030 33.6085 4.5224 REMARK 3 T TENSOR REMARK 3 T11: 1.0139 T22: 0.6057 REMARK 3 T33: 0.9145 T12: -0.3048 REMARK 3 T13: -0.3614 T23: 0.3139 REMARK 3 L TENSOR REMARK 3 L11: 3.5974 L22: 3.8363 REMARK 3 L33: 7.6032 L12: -3.0080 REMARK 3 L13: -2.7387 L23: 4.5558 REMARK 3 S TENSOR REMARK 3 S11: 0.1882 S12: 0.5241 S13: 0.7774 REMARK 3 S21: -0.7635 S22: 0.0296 S23: -2.1012 REMARK 3 S31: -1.7856 S32: 1.3156 S33: -0.6386 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2390 40.3065 17.8222 REMARK 3 T TENSOR REMARK 3 T11: 1.3466 T22: 1.0633 REMARK 3 T33: 0.9676 T12: -0.1149 REMARK 3 T13: 0.2720 T23: 0.1270 REMARK 3 L TENSOR REMARK 3 L11: 1.2255 L22: 9.4916 REMARK 3 L33: 1.6338 L12: 0.1803 REMARK 3 L13: 1.1655 L23: 1.6330 REMARK 3 S TENSOR REMARK 3 S11: -0.2162 S12: 0.1669 S13: 0.0081 REMARK 3 S21: -1.4597 S22: 1.1878 S23: -0.8338 REMARK 3 S31: -1.3464 S32: 1.4858 S33: -0.9765 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1541 30.7865 14.4412 REMARK 3 T TENSOR REMARK 3 T11: 0.9061 T22: 0.4451 REMARK 3 T33: 0.8873 T12: -0.0452 REMARK 3 T13: -0.3959 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 4.3108 L22: 6.3165 REMARK 3 L33: 4.9060 L12: -1.2539 REMARK 3 L13: -2.2968 L23: -0.2361 REMARK 3 S TENSOR REMARK 3 S11: -0.4010 S12: -0.1542 S13: 1.1952 REMARK 3 S21: -0.2429 S22: -0.4387 S23: 0.1635 REMARK 3 S31: -1.6549 S32: 0.1762 S33: 0.7915 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6996 35.7890 11.2654 REMARK 3 T TENSOR REMARK 3 T11: 0.8419 T22: 0.5400 REMARK 3 T33: 0.9424 T12: -1.1840 REMARK 3 T13: -0.6541 T23: -0.0450 REMARK 3 L TENSOR REMARK 3 L11: 3.1869 L22: 3.7508 REMARK 3 L33: 1.6932 L12: 2.8786 REMARK 3 L13: -2.2437 L23: -2.4153 REMARK 3 S TENSOR REMARK 3 S11: 0.4592 S12: 0.0603 S13: -1.0092 REMARK 3 S21: 0.3885 S22: 0.6731 S23: -0.7685 REMARK 3 S31: 1.5239 S32: -0.8076 S33: 0.1953 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4877 23.3807 9.6560 REMARK 3 T TENSOR REMARK 3 T11: 0.6077 T22: 0.4846 REMARK 3 T33: 0.8450 T12: -0.0592 REMARK 3 T13: -0.3282 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 4.7856 L22: 5.7341 REMARK 3 L33: 6.4872 L12: 4.6221 REMARK 3 L13: 0.4686 L23: 2.7490 REMARK 3 S TENSOR REMARK 3 S11: -0.5787 S12: -0.1791 S13: 0.6885 REMARK 3 S21: 0.8866 S22: -0.5091 S23: -0.1161 REMARK 3 S31: -1.9348 S32: -0.4777 S33: 0.6514 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4696 -27.4432 -10.6789 REMARK 3 T TENSOR REMARK 3 T11: 0.3031 T22: 0.4701 REMARK 3 T33: 0.3212 T12: -0.0448 REMARK 3 T13: -0.0403 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 7.2710 L22: 5.1494 REMARK 3 L33: 9.2008 L12: 2.4225 REMARK 3 L13: -7.5278 L23: -1.0378 REMARK 3 S TENSOR REMARK 3 S11: 1.2621 S12: 0.7033 S13: 0.2373 REMARK 3 S21: -0.7092 S22: -0.7250 S23: 0.1223 REMARK 3 S31: -0.1727 S32: -0.1521 S33: -0.3153 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 8 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9721 -26.7496 -11.6836 REMARK 3 T TENSOR REMARK 3 T11: 0.4052 T22: 0.7081 REMARK 3 T33: 0.4245 T12: -0.0190 REMARK 3 T13: -0.0691 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 8.1886 L22: 4.4457 REMARK 3 L33: 6.9272 L12: -0.6633 REMARK 3 L13: -6.1460 L23: -1.3176 REMARK 3 S TENSOR REMARK 3 S11: -0.7775 S12: 0.1090 S13: -0.5477 REMARK 3 S21: -0.2559 S22: -0.2957 S23: 0.3741 REMARK 3 S31: 0.8032 S32: -0.5215 S33: 0.8164 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 17 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5498 -18.1584 -15.3358 REMARK 3 T TENSOR REMARK 3 T11: 0.4027 T22: 0.6500 REMARK 3 T33: 0.4481 T12: -0.0193 REMARK 3 T13: -0.0639 T23: 0.1819 REMARK 3 L TENSOR REMARK 3 L11: 7.4953 L22: 4.8333 REMARK 3 L33: 8.0915 L12: -2.9380 REMARK 3 L13: 1.5967 L23: 2.3133 REMARK 3 S TENSOR REMARK 3 S11: 0.1986 S12: 0.8768 S13: 0.3963 REMARK 3 S21: -0.6266 S22: -0.3558 S23: -0.5336 REMARK 3 S31: -0.1967 S32: 0.3638 S33: 0.1729 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 35 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3389 -14.2749 -9.4446 REMARK 3 T TENSOR REMARK 3 T11: 0.5690 T22: 0.7708 REMARK 3 T33: 0.6946 T12: 0.1289 REMARK 3 T13: -0.0948 T23: 0.0568 REMARK 3 L TENSOR REMARK 3 L11: 8.2225 L22: 7.5624 REMARK 3 L33: 2.1912 L12: -3.7915 REMARK 3 L13: 3.8678 L23: -1.2426 REMARK 3 S TENSOR REMARK 3 S11: -0.1837 S12: -0.4089 S13: 1.0998 REMARK 3 S21: 0.1323 S22: 0.3917 S23: 1.6674 REMARK 3 S31: -1.2293 S32: -2.1920 S33: -0.0473 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 45 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3525 -16.3320 -3.6389 REMARK 3 T TENSOR REMARK 3 T11: 0.2921 T22: 0.5402 REMARK 3 T33: 0.5580 T12: -0.0408 REMARK 3 T13: -0.0781 T23: 0.0697 REMARK 3 L TENSOR REMARK 3 L11: 5.8208 L22: 9.5840 REMARK 3 L33: 7.2309 L12: -1.6367 REMARK 3 L13: 0.0469 L23: 0.7463 REMARK 3 S TENSOR REMARK 3 S11: 0.1793 S12: -0.1487 S13: 1.4593 REMARK 3 S21: 0.0606 S22: 0.0091 S23: -0.3511 REMARK 3 S31: -0.6927 S32: 0.3797 S33: 0.1640 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 57 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9426 -25.0738 -6.4048 REMARK 3 T TENSOR REMARK 3 T11: 0.4883 T22: 0.6142 REMARK 3 T33: 0.4683 T12: 0.0809 REMARK 3 T13: -0.0454 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 2.2230 L22: 4.3474 REMARK 3 L33: 2.3617 L12: -0.2943 REMARK 3 L13: 0.6404 L23: 1.3417 REMARK 3 S TENSOR REMARK 3 S11: 0.4378 S12: 0.9469 S13: -0.0760 REMARK 3 S21: -0.3858 S22: -0.2285 S23: -2.3191 REMARK 3 S31: 0.5027 S32: 1.4056 S33: 0.0379 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 65 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8471 -22.6927 -5.5115 REMARK 3 T TENSOR REMARK 3 T11: 0.3105 T22: 0.5687 REMARK 3 T33: 0.3305 T12: -0.0118 REMARK 3 T13: -0.0520 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 6.1705 L22: 7.6356 REMARK 3 L33: 4.6833 L12: -2.6575 REMARK 3 L13: -2.2991 L23: 2.4764 REMARK 3 S TENSOR REMARK 3 S11: -0.7038 S12: 0.1877 S13: -0.2717 REMARK 3 S21: -0.7463 S22: 0.2104 S23: 0.6989 REMARK 3 S31: 0.6301 S32: -1.0050 S33: 0.3000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NPO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292112442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873128 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS, POINTLESS, STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9868 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 24.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UBQ REMARK 200 REMARK 200 REMARK: ROUND PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 20 MM TRIS PH REMARK 280 7.5, 50 MM NACL, 0.1 M SODIUM CITRATE TRIBASIC DIHYDRATE PH 5.6, REMARK 280 30% W/V PEG 4000; 22 MG/ML, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 29.81500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 29.81500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2 GOL A 101 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 VAL B 17 CG1 CG2 REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 LEU B 56 CG CD1 CD2 REMARK 470 SER B 57 OG REMARK 470 ASN B 60 CG OD1 ND2 REMARK 470 ILE B 61 CG1 CG2 CD1 REMARK 470 GLN B 62 CG CD OE1 NE2 REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 SER B 65 OG REMARK 470 ARG C 74 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 63 C GLY C 76 1.40 REMARK 500 NZ LYS A 48 C GLY B 76 1.40 REMARK 500 NZ LYS A 63 O GLY C 76 1.74 REMARK 500 NZ LYS A 48 O GLY B 76 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 62 -159.50 -122.10 REMARK 500 GLU C 64 18.82 59.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7NBB RELATED DB: PDB REMARK 900 7NBB CONTAINS THE SAME BRANCHED CHAIN BOUND TO SYNTHETIC NANOBODY DBREF 7NPO A 1 72 UNP J3QS39 J3QS39_HUMAN 1 72 DBREF 7NPO B 1 76 UNP J3QS39 J3QS39_HUMAN 1 76 DBREF 7NPO C 1 76 UNP J3QS39 J3QS39_HUMAN 1 76 SEQADV 7NPO ARG B 48 UNP J3QS39 LYS 48 ENGINEERED MUTATION SEQADV 7NPO ARG B 63 UNP J3QS39 LYS 63 ENGINEERED MUTATION SEQADV 7NPO ARG C 48 UNP J3QS39 LYS 48 ENGINEERED MUTATION SEQADV 7NPO ARG C 63 UNP J3QS39 LYS 63 ENGINEERED MUTATION SEQRES 1 A 72 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 72 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 72 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 72 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 72 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 72 THR LEU HIS LEU VAL LEU ARG SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY ARG GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN ARG GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 76 GLN GLN ARG LEU ILE PHE ALA GLY ARG GLN LEU GLU ASP SEQRES 5 C 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN ARG GLU SER SEQRES 6 C 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET GOL A 101 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *25(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 LEU A 56 ASN A 60 5 5 HELIX 4 AA4 THR B 22 GLY B 35 1 14 HELIX 5 AA5 PRO B 37 ASP B 39 5 3 HELIX 6 AA6 THR C 22 GLY C 35 1 14 HELIX 7 AA7 PRO C 37 ASP C 39 5 3 HELIX 8 AA8 LEU C 56 ASN C 60 5 5 SHEET 1 AA1 5 THR A 12 GLU A 16 0 SHEET 2 AA1 5 GLN A 2 THR A 7 -1 N VAL A 5 O ILE A 13 SHEET 3 AA1 5 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 AA1 5 GLN A 41 PHE A 45 -1 N ILE A 44 O HIS A 68 SHEET 5 AA1 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 AA2 5 THR B 12 GLU B 16 0 SHEET 2 AA2 5 GLN B 2 THR B 7 -1 N VAL B 5 O ILE B 13 SHEET 3 AA2 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 AA2 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA2 5 ARG B 48 GLN B 49 -1 O ARG B 48 N PHE B 45 SHEET 1 AA3 5 THR C 12 GLU C 16 0 SHEET 2 AA3 5 GLN C 2 THR C 7 -1 N VAL C 5 O ILE C 13 SHEET 3 AA3 5 SER C 65 LEU C 71 1 O LEU C 67 N PHE C 4 SHEET 4 AA3 5 GLN C 41 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 AA3 5 ARG C 48 GLN C 49 -1 O ARG C 48 N PHE C 45 CRYST1 59.630 77.570 50.610 90.00 123.98 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016770 0.000000 0.011301 0.00000 SCALE2 0.000000 0.012892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023827 0.00000