HEADER NUCLEAR PROTEIN 01-MAR-21 7NQ6 TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN (RESIDUES 715- TITLE 2 866) OF NUCLEOPORIN-98 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP96; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUCLEAR PORE COMPLEX PROTEIN NUP98,NUCLEAR PORE COMPLEX COMPND 5 PROTEIN NUP98-NUP96,NUCLEOPORIN NUP96,NUCLEOPORIN NUP98; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS TROPICALIS; SOURCE 3 ORGANISM_COMMON: WESTERN CLAWED FROG, SILURANA TROPICALIS; SOURCE 4 ORGANISM_TAXID: 8364; SOURCE 5 GENE: NUP98; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: NEB EXPRESS KEYWDS NUP98, 1.5A RESOLUTION, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.TRAKHANOV,D.GOERLICH,T.HUYTON REVDAT 2 31-JAN-24 7NQ6 1 REMARK REVDAT 1 07-APR-21 7NQ6 0 JRNL AUTH S.TRAKHANOV,T.HUYTON,D.GOERLICH JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN JRNL TITL 2 (RESIDUES 715-866) OF NUCLEOPORIN-98 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5600 - 3.6100 1.00 2887 153 0.1588 0.1775 REMARK 3 2 3.6100 - 2.8700 1.00 2745 144 0.1569 0.1899 REMARK 3 3 2.8700 - 2.5100 1.00 2712 142 0.1511 0.1565 REMARK 3 4 2.5100 - 2.2800 1.00 2682 141 0.1515 0.1758 REMARK 3 5 2.2800 - 2.1100 1.00 2662 140 0.1612 0.1622 REMARK 3 6 2.1100 - 1.9900 1.00 2665 142 0.1665 0.1961 REMARK 3 7 1.9900 - 1.8900 1.00 2647 138 0.1721 0.2120 REMARK 3 8 1.8900 - 1.8100 1.00 2645 140 0.1876 0.2078 REMARK 3 9 1.8100 - 1.7400 1.00 2636 138 0.1958 0.2103 REMARK 3 10 1.7400 - 1.6800 1.00 2642 140 0.2147 0.2691 REMARK 3 11 1.6800 - 1.6300 1.00 2631 138 0.2292 0.2635 REMARK 3 12 1.6300 - 1.5800 1.00 2617 137 0.2525 0.3007 REMARK 3 13 1.5800 - 1.5400 1.00 2623 138 0.2815 0.2712 REMARK 3 14 1.5400 - 1.5000 1.00 2607 138 0.3316 0.3595 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.198 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.694 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1271 REMARK 3 ANGLE : 0.962 1727 REMARK 3 CHIRALITY : 0.060 186 REMARK 3 PLANARITY : 0.007 229 REMARK 3 DIHEDRAL : 5.252 1064 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 715 THROUGH 726 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8936 17.6256 -12.0619 REMARK 3 T TENSOR REMARK 3 T11: 0.3742 T22: 0.2493 REMARK 3 T33: 0.2289 T12: -0.1087 REMARK 3 T13: -0.0293 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 3.3077 L22: 4.8225 REMARK 3 L33: 3.9741 L12: -3.8889 REMARK 3 L13: 0.5224 L23: 0.3564 REMARK 3 S TENSOR REMARK 3 S11: -0.0952 S12: 0.4213 S13: -0.4157 REMARK 3 S21: -0.2039 S22: 0.1065 S23: 0.5052 REMARK 3 S31: 0.6211 S32: -0.4913 S33: -0.0928 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 727 THROUGH 738 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8586 13.9355 -3.9856 REMARK 3 T TENSOR REMARK 3 T11: 0.2912 T22: 0.1792 REMARK 3 T33: 0.2997 T12: 0.0074 REMARK 3 T13: 0.0191 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 6.3690 L22: 8.5640 REMARK 3 L33: 6.8145 L12: 5.4536 REMARK 3 L13: -1.7356 L23: -3.3349 REMARK 3 S TENSOR REMARK 3 S11: -0.1106 S12: -0.1066 S13: -0.8513 REMARK 3 S21: 0.0046 S22: -0.0790 S23: -0.4268 REMARK 3 S31: 0.5744 S32: 0.0410 S33: 0.2058 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 739 THROUGH 781 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3904 19.9724 -2.4261 REMARK 3 T TENSOR REMARK 3 T11: 0.2060 T22: 0.2006 REMARK 3 T33: 0.1623 T12: -0.0591 REMARK 3 T13: -0.0121 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 3.0840 L22: 3.5921 REMARK 3 L33: 1.8037 L12: 1.9982 REMARK 3 L13: -1.3834 L23: -1.6763 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: -0.1469 S13: -0.1869 REMARK 3 S21: -0.1007 S22: -0.0268 S23: 0.1337 REMARK 3 S31: 0.2892 S32: -0.1396 S33: 0.0634 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 782 THROUGH 793 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3270 32.8852 -8.2257 REMARK 3 T TENSOR REMARK 3 T11: 0.1643 T22: 0.2619 REMARK 3 T33: 0.1681 T12: 0.0305 REMARK 3 T13: -0.0066 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 5.4337 L22: 2.5374 REMARK 3 L33: 3.1011 L12: -0.4935 REMARK 3 L13: 3.9270 L23: 0.4262 REMARK 3 S TENSOR REMARK 3 S11: 0.1372 S12: -0.1070 S13: 0.0696 REMARK 3 S21: 0.0125 S22: 0.0041 S23: 0.3554 REMARK 3 S31: -0.2296 S32: -0.6582 S33: -0.0302 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 794 THROUGH 804 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8126 27.0807 1.1418 REMARK 3 T TENSOR REMARK 3 T11: 0.1879 T22: 0.5757 REMARK 3 T33: 0.3274 T12: -0.0872 REMARK 3 T13: 0.0291 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 3.1475 L22: 1.1548 REMARK 3 L33: 1.0063 L12: 0.4915 REMARK 3 L13: 0.2858 L23: 1.0737 REMARK 3 S TENSOR REMARK 3 S11: 0.2206 S12: -0.4975 S13: 0.3011 REMARK 3 S21: 0.2599 S22: -0.4982 S23: 0.7330 REMARK 3 S31: 0.2783 S32: -1.1815 S33: 0.0966 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 805 THROUGH 825 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5122 40.3211 -5.1037 REMARK 3 T TENSOR REMARK 3 T11: 0.2269 T22: 0.3493 REMARK 3 T33: 0.2404 T12: -0.0838 REMARK 3 T13: -0.0387 T23: 0.0826 REMARK 3 L TENSOR REMARK 3 L11: 3.0188 L22: 2.6133 REMARK 3 L33: 3.6521 L12: 2.4391 REMARK 3 L13: -3.0495 L23: -1.8185 REMARK 3 S TENSOR REMARK 3 S11: -0.0556 S12: 0.1717 S13: 0.2586 REMARK 3 S21: -0.1385 S22: 0.0655 S23: 0.0322 REMARK 3 S31: -0.2389 S32: 0.1781 S33: -0.1118 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 826 THROUGH 833 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2867 45.3990 4.2842 REMARK 3 T TENSOR REMARK 3 T11: 0.2626 T22: 0.3885 REMARK 3 T33: 0.2453 T12: -0.1142 REMARK 3 T13: -0.0506 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 6.6558 L22: 7.8771 REMARK 3 L33: 3.8984 L12: -1.8796 REMARK 3 L13: -4.6498 L23: 3.4392 REMARK 3 S TENSOR REMARK 3 S11: -0.2930 S12: -0.5236 S13: 0.1607 REMARK 3 S21: 0.3249 S22: 0.2866 S23: -0.4563 REMARK 3 S31: 0.0043 S32: 1.0065 S33: -0.0413 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 834 THROUGH 844 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6156 44.7906 5.5909 REMARK 3 T TENSOR REMARK 3 T11: 0.2073 T22: 0.1902 REMARK 3 T33: 0.2581 T12: -0.0115 REMARK 3 T13: -0.0545 T23: 0.0587 REMARK 3 L TENSOR REMARK 3 L11: 9.9739 L22: 4.2739 REMARK 3 L33: 4.1227 L12: -3.4767 REMARK 3 L13: -5.7204 L23: 3.4509 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: 0.2183 S13: 0.3669 REMARK 3 S21: -0.0117 S22: -0.0036 S23: -0.0927 REMARK 3 S31: -0.5810 S32: 0.0211 S33: -0.0619 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 845 THROUGH 866 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0457 35.4749 4.2211 REMARK 3 T TENSOR REMARK 3 T11: 0.1521 T22: 0.1732 REMARK 3 T33: 0.1528 T12: -0.0244 REMARK 3 T13: -0.0169 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 7.3904 L22: 2.9963 REMARK 3 L33: 4.1855 L12: 0.3692 REMARK 3 L13: 1.9643 L23: 0.9388 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: 0.1923 S13: 0.2334 REMARK 3 S21: 0.0246 S22: -0.0994 S23: 0.1075 REMARK 3 S31: -0.0869 S32: -0.1947 S33: 0.1058 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114437. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROW REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39371 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 90.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 37.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5E0Q REMARK 200 REMARK 200 REMARK: RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% (V/W) PEG 6000, 8% (V/V) 2-METHY REMARK 280 -2,4-PENTANEDIOL, 0.1 M HEPES, PH 7.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.91000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.03500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.03500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.95500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.03500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.03500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.86500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.03500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.03500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 22.95500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.03500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.03500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.86500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1158 O HOH A 1178 1.99 REMARK 500 OE1 GLN A 848 O HOH A 1002 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1146 O HOH A 1159 3555 1.93 REMARK 500 O HOH A 1142 O HOH A 1191 7565 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 726 -20.73 86.36 REMARK 500 SER A 726 -5.39 77.84 REMARK 500 PHE A 758 -47.37 -130.16 REMARK 500 TYR A 788 103.04 73.78 REMARK 500 HIS A 865 -175.48 -177.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1214 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A1215 DISTANCE = 7.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 902 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 758 O REMARK 620 2 ASP A 810 O 95.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 903 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 806 O REMARK 620 2 THR A 808 OG1 126.0 REMARK 620 3 HOH A1066 O 126.2 95.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 904 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 855 OE2 REMARK 620 2 HOH A1161 O 108.3 REMARK 620 3 HOH A1180 O 109.4 2.2 REMARK 620 N 1 2 DBREF 7NQ6 A 716 866 UNP F6ZMG3 F6ZMG3_XENTR 672 822 SEQADV 7NQ6 SER A 715 UNP F6ZMG3 EXPRESSION TAG SEQRES 1 A 152 SER HIS PRO ALA GLY ILE ILE LEU THR ARG ASP SER TYR SEQRES 2 A 152 TYR THR ILE PRO SER MET GLU GLU LEU ALA ARG SER VAL SEQRES 3 A 152 ASP GLU ASN GLY GLU CYS ILE VAL ASN GLY PHE THR ILE SEQRES 4 A 152 GLY ARG GLU GLY PHE GLY SER ILE TYR PHE GLU GLY ILE SEQRES 5 A 152 VAL ASN LEU THR ASN LEU ASP LEU ASP SER ILE VAL HIS SEQRES 6 A 152 ILE ARG ARG LYS GLU VAL ILE VAL TYR VAL ASP ASP GLN SEQRES 7 A 152 ASN LYS PRO PRO LEU GLY GLU GLY LEU ASN ARG PRO ALA SEQRES 8 A 152 GLN VAL THR LEU ASP GLU VAL TRP PRO ILE ASP LYS THR SEQRES 9 A 152 SER ARG CYS MET ILE THR SER PRO GLU ARG LEU SER GLU SEQRES 10 A 152 MET ASN TYR LYS SER LYS LEU GLU ASN ALA SER ARG LYS SEQRES 11 A 152 GLN GLY ALA GLN PHE VAL ASP TYR ARG PRO GLU SER GLY SEQRES 12 A 152 SER TRP VAL PHE LYS VAL ASN HIS PHE HET MPD A 901 22 HET NA A 902 1 HET NA A 903 1 HET NA A 904 1 HET CL A 905 1 HET CL A 906 1 HET CL A 907 1 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 2 MPD C6 H14 O2 FORMUL 3 NA 3(NA 1+) FORMUL 6 CL 3(CL 1-) FORMUL 9 HOH *215(H2 O) HELIX 1 AA1 SER A 732 ARG A 738 1 7 HELIX 2 AA2 ASP A 773 ILE A 777 1 5 HELIX 3 AA3 ASP A 790 LYS A 794 5 5 HELIX 4 AA4 SER A 825 MET A 832 1 8 HELIX 5 AA5 ASN A 833 GLN A 845 1 13 SHEET 1 AA1 6 TYR A 727 ILE A 730 0 SHEET 2 AA1 6 ILE A 747 ARG A 755 -1 O THR A 752 N ILE A 730 SHEET 3 AA1 6 GLY A 759 ASN A 768 -1 O PHE A 763 N PHE A 751 SHEET 4 AA1 6 ALA A 805 LEU A 809 -1 O THR A 808 N SER A 760 SHEET 5 AA1 6 SER A 858 VAL A 863 -1 O PHE A 861 N VAL A 807 SHEET 6 AA1 6 GLN A 848 ARG A 853 -1 N ASP A 851 O VAL A 860 SHEET 1 AA2 2 VAL A 778 ARG A 781 0 SHEET 2 AA2 2 GLU A 784 VAL A 787 -1 O GLU A 784 N ARG A 781 LINK O PHE A 758 NA NA A 902 1555 1555 2.82 LINK O GLN A 806 NA NA A 903 1555 1555 2.77 LINK OG1 THR A 808 NA NA A 903 1555 1555 2.76 LINK O ASP A 810 NA NA A 902 1555 1555 2.54 LINK OE2 GLU A 855 NA NA A 904 1555 3555 2.71 LINK NA NA A 903 O HOH A1066 1555 1555 2.81 LINK NA NA A 904 O HOH A1161 1555 1555 2.82 LINK NA NA A 904 O HOH A1180 1555 4454 2.30 CISPEP 1 ILE A 730 PRO A 731 0 -5.37 CRYST1 72.070 72.070 91.820 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013875 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010891 0.00000