HEADER HYDROLASE 03-MAR-21 7NR6 TITLE STRUCTURE OF NUDT15 IN COMPLEX WITH NSC56456 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE 8-OXO-DGTP DIPHOSPHATASE NUDT15; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 8-OXO-DGTPASE NUDT15,7,8-DIHYDRO-8-OXOGUANINE-TRIPHOSPHATASE COMPND 5 NUDT15,MUTT HOMOLOG 2,MTH2,NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X COMPND 6 MOTIF 15,NUDIX MOTIF 15; COMPND 7 EC: 3.6.1.9; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT15, MTH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, COMPLEX, NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.REHLING,P.STENMARK REVDAT 2 31-JAN-24 7NR6 1 REMARK REVDAT 1 23-MAR-22 7NR6 0 JRNL AUTH N.C.K.VALERIE,D.REHLING,P.STENMARK JRNL TITL COUPLING CELLULAR TARGET ENGAGEMENT TO DRUG-INDUCED JRNL TITL 2 RESPONSES WITH CETEAM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 29528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 67.6900 - 3.8800 0.98 2950 167 0.1638 0.1709 REMARK 3 2 3.8800 - 3.0800 0.99 2861 145 0.1613 0.1950 REMARK 3 3 3.0800 - 2.6900 1.00 2837 154 0.2033 0.2131 REMARK 3 4 2.6900 - 2.4400 0.99 2780 150 0.2061 0.2159 REMARK 3 5 2.4400 - 2.2700 0.99 2796 137 0.2092 0.2400 REMARK 3 6 2.2700 - 2.1300 1.00 2793 126 0.2054 0.2202 REMARK 3 7 2.1300 - 2.0300 1.00 2828 119 0.1994 0.2463 REMARK 3 8 2.0300 - 1.9400 0.99 2731 148 0.2143 0.2259 REMARK 3 9 1.9400 - 1.8600 0.99 2766 143 0.2313 0.2798 REMARK 3 10 1.8600 - 1.8000 1.00 2767 130 0.2473 0.2958 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.189 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2629 REMARK 3 ANGLE : 0.822 3575 REMARK 3 CHIRALITY : 0.061 357 REMARK 3 PLANARITY : 0.006 494 REMARK 3 DIHEDRAL : 13.581 975 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 11:45) REMARK 3 ORIGIN FOR THE GROUP (A): 52.7087 55.3901 289.6347 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.1270 REMARK 3 T33: 0.1120 T12: 0.0231 REMARK 3 T13: 0.0155 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 3.2532 L22: 1.5208 REMARK 3 L33: 2.0771 L12: 1.1315 REMARK 3 L13: -0.4259 L23: 0.6054 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: 0.2941 S13: 0.0214 REMARK 3 S21: -0.0926 S22: -0.0125 S23: 0.3625 REMARK 3 S31: 0.3380 S32: -0.4830 S33: -0.0281 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 46:105) REMARK 3 ORIGIN FOR THE GROUP (A): 56.4400 63.2742 293.4390 REMARK 3 T TENSOR REMARK 3 T11: 0.1212 T22: 0.1060 REMARK 3 T33: 0.1360 T12: 0.0227 REMARK 3 T13: 0.0047 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.6882 L22: 2.2485 REMARK 3 L33: 1.0127 L12: 0.9669 REMARK 3 L13: -1.0476 L23: -0.4480 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: 0.0676 S13: 0.2835 REMARK 3 S21: 0.0684 S22: 0.1268 S23: 0.2091 REMARK 3 S31: 0.0452 S32: -0.1536 S33: 0.0268 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 106:134) REMARK 3 ORIGIN FOR THE GROUP (A): 49.3124 50.7390 290.3891 REMARK 3 T TENSOR REMARK 3 T11: 0.2418 T22: 0.2807 REMARK 3 T33: 0.1801 T12: -0.0233 REMARK 3 T13: 0.0087 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 1.3727 L22: 1.1575 REMARK 3 L33: 2.1716 L12: 1.3078 REMARK 3 L13: 0.2656 L23: -0.5308 REMARK 3 S TENSOR REMARK 3 S11: -0.0493 S12: 0.1438 S13: -0.1887 REMARK 3 S21: -0.0543 S22: 0.1144 S23: 0.2080 REMARK 3 S31: 0.2410 S32: -0.5651 S33: -0.0059 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 135:163) REMARK 3 ORIGIN FOR THE GROUP (A): 64.7892 57.2274 283.2356 REMARK 3 T TENSOR REMARK 3 T11: 0.2295 T22: 0.1994 REMARK 3 T33: 0.1892 T12: 0.0246 REMARK 3 T13: 0.0170 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.0714 L22: 1.5127 REMARK 3 L33: 0.8893 L12: 1.3489 REMARK 3 L13: -0.5791 L23: 0.2271 REMARK 3 S TENSOR REMARK 3 S11: -0.1308 S12: 0.1895 S13: -0.1814 REMARK 3 S21: -0.2454 S22: 0.1264 S23: -0.1445 REMARK 3 S31: 0.2905 S32: 0.1241 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 11:84) REMARK 3 ORIGIN FOR THE GROUP (A): 73.0250 77.7006 281.1454 REMARK 3 T TENSOR REMARK 3 T11: 0.1414 T22: 0.1384 REMARK 3 T33: 0.1842 T12: 0.0078 REMARK 3 T13: -0.0023 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 2.2731 L22: 1.8683 REMARK 3 L33: 2.8547 L12: 1.3156 REMARK 3 L13: -0.8275 L23: -0.6992 REMARK 3 S TENSOR REMARK 3 S11: 0.0122 S12: 0.2384 S13: 0.4009 REMARK 3 S21: 0.0044 S22: 0.1170 S23: 0.2593 REMARK 3 S31: -0.3275 S32: 0.0982 S33: 0.0370 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 85:99) REMARK 3 ORIGIN FOR THE GROUP (A): 65.8454 78.3424 291.1689 REMARK 3 T TENSOR REMARK 3 T11: 0.3120 T22: 0.0875 REMARK 3 T33: 0.4493 T12: 0.0150 REMARK 3 T13: 0.0776 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 1.1746 L22: 0.3785 REMARK 3 L33: 0.9295 L12: -0.1918 REMARK 3 L13: 0.1467 L23: -0.5673 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: -0.0289 S13: 1.0530 REMARK 3 S21: 0.3586 S22: 0.1591 S23: 0.0379 REMARK 3 S31: -0.6535 S32: 0.3011 S33: 0.0933 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 100:132) REMARK 3 ORIGIN FOR THE GROUP (A): 81.9386 82.8930 280.7862 REMARK 3 T TENSOR REMARK 3 T11: 0.2683 T22: 0.2316 REMARK 3 T33: 0.2201 T12: -0.0743 REMARK 3 T13: 0.0471 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.4637 L22: 1.1881 REMARK 3 L33: 1.8411 L12: 0.4623 REMARK 3 L13: -0.3779 L23: 0.0263 REMARK 3 S TENSOR REMARK 3 S11: 0.1080 S12: 0.0685 S13: 0.2354 REMARK 3 S21: 0.0114 S22: 0.0395 S23: -0.0947 REMARK 3 S31: -0.4272 S32: 0.4764 S33: 0.0101 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 133:163) REMARK 3 ORIGIN FOR THE GROUP (A): 75.4665 70.3765 292.6103 REMARK 3 T TENSOR REMARK 3 T11: 0.2076 T22: 0.2449 REMARK 3 T33: 0.2111 T12: 0.0079 REMARK 3 T13: -0.0183 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.6370 L22: 1.6060 REMARK 3 L33: 1.2640 L12: 1.6248 REMARK 3 L13: -0.2626 L23: -0.7851 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: -0.1949 S13: 0.0097 REMARK 3 S21: 0.0873 S22: -0.0559 S23: -0.1108 REMARK 3 S31: -0.0907 S32: 0.3567 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29634 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 67.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.91900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5BON REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 0.2M SODIUM REMARK 280 ACETATE, 30% PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.42150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.69000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.51600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.69000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.42150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.51600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 PRO A 7 REMARK 465 ARG A 8 REMARK 465 GLY A 9 REMARK 465 ARG A 10 REMARK 465 LEU A 164 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLN B 6 REMARK 465 PRO B 7 REMARK 465 ARG B 8 REMARK 465 GLY B 9 REMARK 465 ARG B 10 REMARK 465 LEU B 164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 113 76.80 -118.54 REMARK 500 GLU B 113 77.88 -119.33 REMARK 500 TRP B 136 -70.92 -37.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 529 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 530 DISTANCE = 5.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 47 O REMARK 620 2 GLU A 63 OE1 76.6 REMARK 620 3 GLU A 67 OE2 70.9 100.3 REMARK 620 4 HOH A 438 O 66.2 142.7 71.0 REMARK 620 5 HOH A 449 O 126.7 137.7 64.5 72.6 REMARK 620 6 HOH A 504 O 141.6 73.2 91.7 141.1 68.4 REMARK 620 7 HOH A 518 O 116.2 85.1 172.2 108.1 107.7 84.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 47 O REMARK 620 2 GLU B 63 OE1 76.4 REMARK 620 3 GLU B 67 OE2 69.7 90.4 REMARK 620 4 HOH B 436 O 70.8 147.1 82.0 REMARK 620 5 HOH B 491 O 141.9 67.7 97.5 145.0 REMARK 620 6 HOH B 507 O 107.4 90.3 176.8 95.7 85.7 REMARK 620 N 1 2 3 4 5 DBREF 7NR6 A 1 164 UNP Q9NV35 NUD15_HUMAN 1 164 DBREF 7NR6 B 1 164 UNP Q9NV35 NUD15_HUMAN 1 164 SEQRES 1 A 164 MET THR ALA SER ALA GLN PRO ARG GLY ARG ARG PRO GLY SEQRES 2 A 164 VAL GLY VAL GLY VAL VAL VAL THR SER CYS LYS HIS PRO SEQRES 3 A 164 ARG CYS VAL LEU LEU GLY LYS ARG LYS GLY SER VAL GLY SEQRES 4 A 164 ALA GLY SER PHE GLN LEU PRO GLY GLY HIS LEU GLU PHE SEQRES 5 A 164 GLY GLU THR TRP GLU GLU CYS ALA GLN ARG GLU THR TRP SEQRES 6 A 164 GLU GLU ALA ALA LEU HIS LEU LYS ASN VAL HIS PHE ALA SEQRES 7 A 164 SER VAL VAL ASN SER PHE ILE GLU LYS GLU ASN TYR HIS SEQRES 8 A 164 TYR VAL THR ILE LEU MET LYS GLY GLU VAL ASP VAL THR SEQRES 9 A 164 HIS ASP SER GLU PRO LYS ASN VAL GLU PRO GLU LYS ASN SEQRES 10 A 164 GLU SER TRP GLU TRP VAL PRO TRP GLU GLU LEU PRO PRO SEQRES 11 A 164 LEU ASP GLN LEU PHE TRP GLY LEU ARG CYS LEU LYS GLU SEQRES 12 A 164 GLN GLY TYR ASP PRO PHE LYS GLU ASP LEU ASN HIS LEU SEQRES 13 A 164 VAL GLY TYR LYS GLY ASN HIS LEU SEQRES 1 B 164 MET THR ALA SER ALA GLN PRO ARG GLY ARG ARG PRO GLY SEQRES 2 B 164 VAL GLY VAL GLY VAL VAL VAL THR SER CYS LYS HIS PRO SEQRES 3 B 164 ARG CYS VAL LEU LEU GLY LYS ARG LYS GLY SER VAL GLY SEQRES 4 B 164 ALA GLY SER PHE GLN LEU PRO GLY GLY HIS LEU GLU PHE SEQRES 5 B 164 GLY GLU THR TRP GLU GLU CYS ALA GLN ARG GLU THR TRP SEQRES 6 B 164 GLU GLU ALA ALA LEU HIS LEU LYS ASN VAL HIS PHE ALA SEQRES 7 B 164 SER VAL VAL ASN SER PHE ILE GLU LYS GLU ASN TYR HIS SEQRES 8 B 164 TYR VAL THR ILE LEU MET LYS GLY GLU VAL ASP VAL THR SEQRES 9 B 164 HIS ASP SER GLU PRO LYS ASN VAL GLU PRO GLU LYS ASN SEQRES 10 B 164 GLU SER TRP GLU TRP VAL PRO TRP GLU GLU LEU PRO PRO SEQRES 11 B 164 LEU ASP GLN LEU PHE TRP GLY LEU ARG CYS LEU LYS GLU SEQRES 12 B 164 GLN GLY TYR ASP PRO PHE LYS GLU ASP LEU ASN HIS LEU SEQRES 13 B 164 VAL GLY TYR LYS GLY ASN HIS LEU HET EDO A 301 4 HET MG A 302 1 HET UO8 A 303 17 HET EDO B 301 4 HET MG B 302 1 HET UO8 B 303 17 HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM UO8 2-AZANYL-9-CYCLOHEXYL-3~{H}-PURINE-6-THIONE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 MG 2(MG 2+) FORMUL 5 UO8 2(C11 H15 N5 S) FORMUL 9 HOH *284(H2 O) HELIX 1 AA1 THR A 55 ALA A 69 1 15 HELIX 2 AA2 GLU A 86 ASN A 89 5 4 HELIX 3 AA3 GLU A 126 LEU A 128 5 3 HELIX 4 AA4 PRO A 130 LEU A 134 5 5 HELIX 5 AA5 PHE A 135 GLN A 144 1 10 HELIX 6 AA6 LEU A 153 VAL A 157 5 5 HELIX 7 AA7 THR B 55 ALA B 69 1 15 HELIX 8 AA8 GLU B 86 ASN B 89 5 4 HELIX 9 AA9 GLU B 126 LEU B 128 5 3 HELIX 10 AB1 PRO B 130 LEU B 134 5 5 HELIX 11 AB2 PHE B 135 GLN B 144 1 10 HELIX 12 AB3 LEU B 153 VAL B 157 5 5 SHEET 1 AA1 4 GLY A 47 HIS A 49 0 SHEET 2 AA1 4 GLY A 13 THR A 21 -1 N VAL A 16 O GLY A 48 SHEET 3 AA1 4 TYR A 90 VAL A 101 1 O MET A 97 N VAL A 19 SHEET 4 AA1 4 LEU A 72 ILE A 85 -1 N SER A 79 O LEU A 96 SHEET 1 AA2 3 PHE A 43 GLN A 44 0 SHEET 2 AA2 3 CYS A 28 ARG A 34 -1 N GLY A 32 O GLN A 44 SHEET 3 AA2 3 ASN A 117 PRO A 124 -1 O GLU A 118 N LYS A 33 SHEET 1 AA3 4 GLY B 47 HIS B 49 0 SHEET 2 AA3 4 GLY B 13 THR B 21 -1 N VAL B 16 O GLY B 48 SHEET 3 AA3 4 TYR B 90 VAL B 101 1 O MET B 97 N VAL B 19 SHEET 4 AA3 4 LEU B 72 ILE B 85 -1 N SER B 79 O LEU B 96 SHEET 1 AA4 3 PHE B 43 GLN B 44 0 SHEET 2 AA4 3 CYS B 28 ARG B 34 -1 N GLY B 32 O GLN B 44 SHEET 3 AA4 3 ASN B 117 PRO B 124 -1 O GLU B 118 N LYS B 33 LINK O GLY A 47 MG MG A 302 1555 1555 2.48 LINK OE1 GLU A 63 MG MG A 302 1555 1555 2.63 LINK OE2 GLU A 67 MG MG A 302 1555 1555 2.16 LINK MG MG A 302 O HOH A 438 1555 1555 2.42 LINK MG MG A 302 O HOH A 449 1555 1555 2.82 LINK MG MG A 302 O HOH A 504 1555 1555 2.43 LINK MG MG A 302 O HOH A 518 1555 1555 2.22 LINK O GLY B 47 MG MG B 302 1555 1555 2.34 LINK OE1 GLU B 63 MG MG B 302 1555 1555 2.90 LINK OE2 GLU B 67 MG MG B 302 1555 1555 2.77 LINK MG MG B 302 O HOH B 436 1555 1555 2.32 LINK MG MG B 302 O HOH B 491 1555 1555 2.47 LINK MG MG B 302 O HOH B 507 1555 1555 2.23 CRYST1 46.843 49.032 135.380 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021348 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007387 0.00000