HEADER MEMBRANE PROTEIN 03-MAR-21 7NRE TITLE CRYSTAL STRUCTURE OF E.COLI BAMA BETA-BARREL IN COMPLEX WITH TITLE 2 DAROBACTIN (CRYSTAL FORM 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DAROBACTIN; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: BAMA, YAET, Z0188, ECS0179; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15A; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS BETA-BARREL, OUTER MEMBRANE, PROTEIN INSERTION, PROTEIN FOLDING, KEYWDS 2 PROTEIN MATURATION, ANTIBIOTIC, NATURAL PRODUCT, CYCLIZED PEPTIDE, KEYWDS 3 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.P.JAKOB,H.KAUR,J.K.MARZINEK,R.GREEN,Y.IMAI,J.BOLLA,C.ROBINSON, AUTHOR 2 P.J.BOND,K.LEWIS,T.MAIER,S.HILLER REVDAT 4 31-JAN-24 7NRE 1 LINK REVDAT 3 19-MAY-21 7NRE 1 JRNL REVDAT 2 28-APR-21 7NRE 1 JRNL REVDAT 1 21-APR-21 7NRE 0 JRNL AUTH H.KAUR,R.P.JAKOB,J.K.MARZINEK,R.GREEN,Y.IMAI,J.R.BOLLA, JRNL AUTH 2 E.AGUSTONI,C.V.ROBINSON,P.J.BOND,K.LEWIS,T.MAIER,S.HILLER JRNL TITL THE ANTIBIOTIC DAROBACTIN MIMICS A BETA-STRAND TO INHIBIT JRNL TITL 2 OUTER MEMBRANE INSERTASE. JRNL REF NATURE V. 593 125 2021 JRNL REFN ESSN 1476-4687 JRNL PMID 33854236 JRNL DOI 10.1038/S41586-021-03455-W REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6020 - 4.5989 1.00 2748 132 0.2230 0.2473 REMARK 3 2 4.5989 - 3.6508 1.00 2725 145 0.1740 0.1865 REMARK 3 3 3.6508 - 3.1894 1.00 2662 142 0.1776 0.2098 REMARK 3 4 3.1894 - 2.8978 1.00 2686 137 0.1984 0.2276 REMARK 3 5 2.8978 - 2.6902 1.00 2694 145 0.2014 0.2581 REMARK 3 6 2.6902 - 2.5316 1.00 2669 146 0.2186 0.2282 REMARK 3 7 2.5316 - 2.4048 1.00 2661 141 0.2493 0.2953 REMARK 3 8 2.4048 - 2.3001 0.99 2656 141 0.2868 0.3642 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 423 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4876 -0.7213 3.6636 REMARK 3 T TENSOR REMARK 3 T11: 0.3504 T22: 0.3841 REMARK 3 T33: 0.3468 T12: -0.0364 REMARK 3 T13: 0.0109 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.9110 L22: 0.3505 REMARK 3 L33: 0.3070 L12: 0.5638 REMARK 3 L13: 0.3447 L23: 0.2036 REMARK 3 S TENSOR REMARK 3 S11: -0.2052 S12: 0.0646 S13: 0.4406 REMARK 3 S21: 0.2302 S22: 0.2301 S23: 0.3303 REMARK 3 S31: -0.3587 S32: 0.1508 S33: 0.0327 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 447 THROUGH 563 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4390 -12.9977 0.1423 REMARK 3 T TENSOR REMARK 3 T11: 0.2861 T22: 0.2427 REMARK 3 T33: 0.2708 T12: 0.0126 REMARK 3 T13: 0.0225 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.6228 L22: 0.3656 REMARK 3 L33: 0.3570 L12: -0.4101 REMARK 3 L13: 0.2284 L23: -0.3208 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: 0.0244 S13: 0.0705 REMARK 3 S21: -0.0040 S22: 0.0394 S23: -0.0995 REMARK 3 S31: 0.0367 S32: 0.1002 S33: 0.0017 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 564 THROUGH 675 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8597 -15.0890 14.6153 REMARK 3 T TENSOR REMARK 3 T11: 0.2501 T22: 0.2879 REMARK 3 T33: 0.2381 T12: 0.0364 REMARK 3 T13: -0.0032 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.3390 L22: 0.0017 REMARK 3 L33: 0.0306 L12: 0.0362 REMARK 3 L13: 0.0954 L23: 0.0296 REMARK 3 S TENSOR REMARK 3 S11: -0.0858 S12: -0.0785 S13: 0.0018 REMARK 3 S21: -0.0376 S22: -0.0100 S23: 0.0764 REMARK 3 S31: -0.0538 S32: -0.0762 S33: -0.0013 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 676 THROUGH 810 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5427 -18.8623 20.8515 REMARK 3 T TENSOR REMARK 3 T11: 0.2366 T22: 0.3124 REMARK 3 T33: 0.2630 T12: 0.0311 REMARK 3 T13: 0.0222 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 1.1641 L22: 0.2491 REMARK 3 L33: 1.1992 L12: 0.1982 REMARK 3 L13: 0.0597 L23: 0.3535 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: -0.2498 S13: -0.0548 REMARK 3 S21: 0.1017 S22: 0.0631 S23: -0.0563 REMARK 3 S31: 0.0437 S32: 0.0723 S33: 0.0021 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NRE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292108227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000009 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22630 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.602 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.15600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 1.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6QGW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06 M MAGNESIUM CHLORIDE/CALCIUM REMARK 280 CHLORIDE, 0.1 M IMIDAZOLE/2-(N-MORPHOLINO)ETHANESULFONIC ACID PH REMARK 280 6.5, 12.5% V/V 2-METHYL-2,4-PENTANEDIOL, 12.5% W/V POLYETHYLENE REMARK 280 GLYCOL 1,000, AND 12.5% W/V POLYETHYLENE GLYCOL 3,350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 19.92658 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.28150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.67914 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 19.92658 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.28150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 44.67914 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1183 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1265 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1295 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE DAROBACTIN IS PEPTIDE-LIKE, A MEMBER OF ANTIBIOTIC CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: DAROBACTIN REMARK 400 CHAIN: C REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 400 REMARK 465 GLY A 401 REMARK 465 SER A 402 REMARK 465 SER A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 HIS A 409 REMARK 465 SER A 410 REMARK 465 SER A 411 REMARK 465 GLY A 412 REMARK 465 GLU A 413 REMARK 465 ASN A 414 REMARK 465 LEU A 415 REMARK 465 TYR A 416 REMARK 465 PHE A 417 REMARK 465 GLN A 418 REMARK 465 HIS A 419 REMARK 465 MET A 420 REMARK 465 ARG A 421 REMARK 465 ASN A 422 REMARK 465 ALA A 679 REMARK 465 SER A 680 REMARK 465 ASN A 681 REMARK 465 TYR A 682 REMARK 465 ASP A 683 REMARK 465 PRO A 684 REMARK 465 ASP A 685 REMARK 465 TYR A 686 REMARK 465 ASP A 687 REMARK 465 TYR A 688 REMARK 465 GLU A 689 REMARK 465 SER A 690 REMARK 465 ALA A 691 REMARK 465 THR A 692 REMARK 465 GLN A 693 REMARK 465 ASP A 694 REMARK 465 GLY A 695 REMARK 465 ALA A 696 REMARK 465 LYS A 697 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 574 O HOH A 1108 1.56 REMARK 500 OD2 ASP A 498 O HOH A 1101 2.12 REMARK 500 OD2 ASP A 569 O HOH A 1102 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 560 132.76 -170.42 REMARK 500 THR A 659 -75.97 -132.00 REMARK 500 GLU A 800 84.28 -156.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1294 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1295 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1296 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A1297 DISTANCE = 7.08 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ORIGINAL REFINEMENT WAS DONE WITH DAROBACTIN DEFINED AS ONE LIGAND. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 C8E A 1001 REMARK 610 C8E A 1002 REMARK 610 C8E A 1004 REMARK 610 C8E A 1005 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 497 OD2 REMARK 620 2 ASP A 497 OD2 0.0 REMARK 620 3 HOH A1157 O 159.2 159.2 REMARK 620 4 HOH A1163 O 86.6 86.6 81.1 REMARK 620 5 HOH A1176 O 88.3 88.3 71.3 63.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1006 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 703 OD1 REMARK 620 2 ASP A 704 OD1 82.7 REMARK 620 N 1 DBREF 7NRE A 421 810 UNP P0A942 BAMA_ECO57 421 810 DBREF 7NRE C 1 7 PDB 7NRE 7NRE 1 7 SEQADV 7NRE MET A 400 UNP P0A942 INITIATING METHIONINE SEQADV 7NRE GLY A 401 UNP P0A942 EXPRESSION TAG SEQADV 7NRE SER A 402 UNP P0A942 EXPRESSION TAG SEQADV 7NRE SER A 403 UNP P0A942 EXPRESSION TAG SEQADV 7NRE HIS A 404 UNP P0A942 EXPRESSION TAG SEQADV 7NRE HIS A 405 UNP P0A942 EXPRESSION TAG SEQADV 7NRE HIS A 406 UNP P0A942 EXPRESSION TAG SEQADV 7NRE HIS A 407 UNP P0A942 EXPRESSION TAG SEQADV 7NRE HIS A 408 UNP P0A942 EXPRESSION TAG SEQADV 7NRE HIS A 409 UNP P0A942 EXPRESSION TAG SEQADV 7NRE SER A 410 UNP P0A942 EXPRESSION TAG SEQADV 7NRE SER A 411 UNP P0A942 EXPRESSION TAG SEQADV 7NRE GLY A 412 UNP P0A942 EXPRESSION TAG SEQADV 7NRE GLU A 413 UNP P0A942 EXPRESSION TAG SEQADV 7NRE ASN A 414 UNP P0A942 EXPRESSION TAG SEQADV 7NRE LEU A 415 UNP P0A942 EXPRESSION TAG SEQADV 7NRE TYR A 416 UNP P0A942 EXPRESSION TAG SEQADV 7NRE PHE A 417 UNP P0A942 EXPRESSION TAG SEQADV 7NRE GLN A 418 UNP P0A942 EXPRESSION TAG SEQADV 7NRE HIS A 419 UNP P0A942 EXPRESSION TAG SEQADV 7NRE MET A 420 UNP P0A942 EXPRESSION TAG SEQADV 7NRE SER A 690 UNP P0A942 CYS 690 CONFLICT SEQADV 7NRE SER A 700 UNP P0A942 CYS 700 CONFLICT SEQRES 1 A 411 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 411 GLU ASN LEU TYR PHE GLN HIS MET ARG ASN THR GLY SER SEQRES 3 A 411 PHE ASN PHE GLY ILE GLY TYR GLY THR GLU SER GLY VAL SEQRES 4 A 411 SER PHE GLN ALA GLY VAL GLN GLN ASP ASN TRP LEU GLY SEQRES 5 A 411 THR GLY TYR ALA VAL GLY ILE ASN GLY THR LYS ASN ASP SEQRES 6 A 411 TYR GLN THR TYR ALA GLU LEU SER VAL THR ASN PRO TYR SEQRES 7 A 411 PHE THR VAL ASP GLY VAL SER LEU GLY GLY ARG LEU PHE SEQRES 8 A 411 TYR ASN ASP PHE GLN ALA ASP ASP ALA ASP LEU SER ASP SEQRES 9 A 411 TYR THR ASN LYS SER TYR GLY THR ASP VAL THR LEU GLY SEQRES 10 A 411 PHE PRO ILE ASN GLU TYR ASN SER LEU ARG ALA GLY LEU SEQRES 11 A 411 GLY TYR VAL HIS ASN SER LEU SER ASN MET GLN PRO GLN SEQRES 12 A 411 VAL ALA MET TRP ARG TYR LEU TYR SER MET GLY GLU HIS SEQRES 13 A 411 PRO SER THR SER ASP GLN ASP ASN SER PHE LYS THR ASP SEQRES 14 A 411 ASP PHE THR PHE ASN TYR GLY TRP THR TYR ASN LYS LEU SEQRES 15 A 411 ASP ARG GLY TYR PHE PRO THR ASP GLY SER ARG VAL ASN SEQRES 16 A 411 LEU THR GLY LYS VAL THR ILE PRO GLY SER ASP ASN GLU SEQRES 17 A 411 TYR TYR LYS VAL THR LEU ASP THR ALA THR TYR VAL PRO SEQRES 18 A 411 ILE ASP ASP ASP HIS LYS TRP VAL VAL LEU GLY ARG THR SEQRES 19 A 411 ARG TRP GLY TYR GLY ASP GLY LEU GLY GLY LYS GLU MET SEQRES 20 A 411 PRO PHE TYR GLU ASN PHE TYR ALA GLY GLY SER SER THR SEQRES 21 A 411 VAL ARG GLY PHE GLN SER ASN THR ILE GLY PRO LYS ALA SEQRES 22 A 411 VAL TYR PHE PRO HIS GLN ALA SER ASN TYR ASP PRO ASP SEQRES 23 A 411 TYR ASP TYR GLU SER ALA THR GLN ASP GLY ALA LYS ASP SEQRES 24 A 411 LEU SER LYS SER ASP ASP ALA VAL GLY GLY ASN ALA MET SEQRES 25 A 411 ALA VAL ALA SER LEU GLU PHE ILE THR PRO THR PRO PHE SEQRES 26 A 411 ILE SER ASP LYS TYR ALA ASN SER VAL ARG THR SER PHE SEQRES 27 A 411 PHE TRP ASP MET GLY THR VAL TRP ASP THR ASN TRP ASP SEQRES 28 A 411 SER SER GLN TYR SER GLY TYR PRO ASP TYR SER ASP PRO SEQRES 29 A 411 SER ASN ILE ARG MET SER ALA GLY ILE ALA LEU GLN TRP SEQRES 30 A 411 MET SER PRO LEU GLY PRO LEU VAL PHE SER TYR ALA GLN SEQRES 31 A 411 PRO PHE LYS LYS TYR ASP GLY ASP LYS ALA GLU GLN PHE SEQRES 32 A 411 GLN PHE ASN ILE GLY LYS THR TRP SEQRES 1 C 7 TRP ASN UX8 SER LYS SER PHE HET UX8 C 3 23 HET C8E A1001 34 HET C8E A1002 39 HET MG A1003 1 HET C8E A1004 23 HET C8E A1005 36 HET MG A1006 1 HETNAM UX8 (2~{S},3~{R})-2-AZANYL-3-(1~{H}-INDOL-3-YL)-3-OXIDANYL- HETNAM 2 UX8 PROPANOIC ACID HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE HETNAM MG MAGNESIUM ION FORMUL 2 UX8 C11 H12 N2 O3 FORMUL 3 C8E 4(C16 H34 O5) FORMUL 5 MG 2(MG 2+) FORMUL 9 HOH *201(H2 O) HELIX 1 AA1 ASP A 497 ASP A 500 5 4 HELIX 2 AA2 GLN A 542 MET A 552 1 11 HELIX 3 AA3 PRO A 647 ASN A 651 5 5 HELIX 4 AA4 SER A 726 ALA A 730 5 5 HELIX 5 AA5 ASP A 750 SER A 755 5 6 SHEET 1 AA118 ASN C 2 SER C 6 0 SHEET 2 AA118 GLY A 424 GLY A 433 -1 N PHE A 428 O UX8 C 3 SHEET 3 AA118 PHE A 802 ILE A 806 -1 O ILE A 806 N TYR A 432 SHEET 4 AA118 GLY A 781 LYS A 792 -1 N SER A 786 O GLN A 803 SHEET 5 AA118 ARG A 767 SER A 778 -1 N ALA A 770 O GLN A 789 SHEET 6 AA118 VAL A 733 TRP A 745 -1 N SER A 736 O ALA A 773 SHEET 7 AA118 ALA A 710 THR A 720 -1 N ALA A 714 O MET A 741 SHEET 8 AA118 VAL A 628 GLY A 640 -1 N ARG A 634 O VAL A 713 SHEET 9 AA118 TYR A 608 PRO A 620 -1 N LEU A 613 O TRP A 635 SHEET 10 AA118 GLY A 590 THR A 600 -1 N GLY A 590 O TYR A 618 SHEET 11 AA118 SER A 564 ASN A 579 -1 N TYR A 578 O VAL A 593 SHEET 12 AA118 ASN A 523 SER A 537 -1 N GLY A 528 O ASN A 573 SHEET 13 AA118 THR A 505 ASN A 520 -1 N TYR A 509 O HIS A 533 SHEET 14 AA118 SER A 484 GLN A 495 -1 N ASN A 492 O SER A 508 SHEET 15 AA118 GLN A 466 ASN A 475 -1 N VAL A 473 O GLY A 487 SHEET 16 AA118 ALA A 455 LYS A 462 -1 N ALA A 455 O THR A 474 SHEET 17 AA118 GLY A 437 GLN A 446 -1 N GLN A 446 O VAL A 456 SHEET 18 AA118 GLY A 424 GLY A 433 -1 N SER A 425 O GLN A 445 SHEET 1 AA2 2 GLY A 662 PHE A 663 0 SHEET 2 AA2 2 ALA A 799 GLU A 800 -1 O GLU A 800 N GLY A 662 SHEET 1 AA3 2 LYS A 671 TYR A 674 0 SHEET 2 AA3 2 SER A 700 ALA A 705 -1 O ASP A 704 N ALA A 672 LINK CZ2 TRP C 1 O9 UX8 C 3 1555 1555 1.38 LINK C ASN C 2 N UX8 C 3 1555 1555 1.40 LINK C UX8 C 3 N SER C 4 1555 1555 1.42 LINK CH2 UX8 C 3 CB LYS C 5 1555 1555 1.41 LINK OD2 ASP A 497 MG MG A1003 1555 1555 2.50 LINK OD2 ASP A 497 MG MG A1003 1555 2655 2.19 LINK OD1 ASP A 703 MG MG A1006 1555 1555 2.25 LINK OD1 ASP A 704 MG MG A1006 1555 1555 2.86 LINK MG MG A1003 O HOH A1157 1555 2655 2.72 LINK MG MG A1003 O HOH A1163 1555 1555 2.71 LINK MG MG A1003 O HOH A1176 1555 2655 2.21 CRYST1 69.995 82.563 94.305 90.00 108.64 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014287 0.000000 0.004820 0.00000 SCALE2 0.000000 0.012112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011191 0.00000