HEADER ENDOCYTOSIS 04-MAR-21 7NRN TITLE NMR STRUCTURE OF GIPC1-GH2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PDZ DOMAIN-CONTAINING PROTEIN GIPC1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAIP C-TERMINUS-INTERACTING PROTEIN,RGS-GAIP-INTERACTING COMPND 5 PROTEIN,RGS19-INTERACTING PROTEIN 1,SEMAF CYTOPLASMIC DOMAIN- COMPND 6 ASSOCIATED PROTEIN 1,SEMCAP-1,SYNECTIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GIPC1, GIPC, RGS19IP1, SEMCAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-HELICAL BUNDLE, PROTEIN BINDING, ENDOCYTOSIS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.BARTHE,C.ROUMESTAND REVDAT 2 14-JUN-23 7NRN 1 REMARK REVDAT 1 14-APR-21 7NRN 0 JRNL AUTH C.DUBOIS,V.J.PLANELLES-HERRERO,C.TILLATTE-TRIPODI,S.DELBECQ, JRNL AUTH 2 L.MAMMRI,E.M.SIRKIA,V.ROPARS,C.ROUMESTAND,P.BARTHE JRNL TITL PRESSURE AND CHEMICAL UNFOLDING OF AN ALPHA-HELICAL BUNDLE JRNL TITL 2 PROTEIN: THE GH2 DOMAIN OF THE PROTEIN ADAPTOR GIPC1. JRNL REF INT J MOL SCI V. 22 2021 JRNL REFN ESSN 1422-0067 JRNL PMID 33808390 JRNL DOI 10.3390/IJMS22073597 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NRN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114463. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-15N] GIPC1-GH2, 20 MM REMARK 210 TRIS, 0.1 MM EDTA, 0.1 MM PMSF, REMARK 210 95% H2O/5% D2O; 1.0 MM [U-13C; U- REMARK 210 15N] GIPC1-GH2, 20 MM TRIS, 0.1 REMARK 210 MM EDTA, 0.1 MM PMSF, 95% H2O/5% REMARK 210 D2O; 1.0 MM GIPC1-GH2, 20 MM REMARK 210 TRIS, 0.1 MM EDTA, 0.1 MM PMSF, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D HNCACB; 3D REMARK 210 HNCO; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CINDY REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 21 OD1 ASP A 66 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 3 36.27 -86.77 REMARK 500 1 ASP A 26 91.80 -160.94 REMARK 500 3 PRO A 3 92.49 -69.93 REMARK 500 3 ASP A 26 103.49 -169.45 REMARK 500 4 ASP A 26 115.04 -165.23 REMARK 500 5 ASP A 26 106.42 -176.61 REMARK 500 6 ASP A 26 104.02 -170.73 REMARK 500 7 LEU A 2 95.09 63.02 REMARK 500 7 SER A 4 -70.61 -81.55 REMARK 500 7 ASP A 26 99.09 -170.25 REMARK 500 8 PRO A 3 99.21 -54.52 REMARK 500 8 ASP A 26 103.95 -161.94 REMARK 500 8 ARG A 78 32.81 -91.16 REMARK 500 9 LEU A 2 83.02 48.25 REMARK 500 9 ASP A 26 99.13 -164.72 REMARK 500 10 PRO A 3 79.51 -66.11 REMARK 500 10 ASP A 26 103.41 -164.37 REMARK 500 11 ASP A 26 98.59 -169.20 REMARK 500 14 ASP A 26 104.08 -162.90 REMARK 500 17 ASP A 26 98.91 -160.00 REMARK 500 18 LEU A 2 74.81 55.92 REMARK 500 18 ASP A 26 103.44 -169.32 REMARK 500 19 PRO A 3 83.07 -69.62 REMARK 500 19 ASP A 26 104.71 -167.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34609 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF GIPC1-GH2 DOMAIN DBREF 7NRN A 1 79 UNP Q9Z0G0 GIPC1_MOUSE 255 333 SEQADV 7NRN GLY A -3 UNP Q9Z0G0 EXPRESSION TAG SEQADV 7NRN ALA A -2 UNP Q9Z0G0 EXPRESSION TAG SEQADV 7NRN MET A -1 UNP Q9Z0G0 EXPRESSION TAG SEQADV 7NRN GLY A 0 UNP Q9Z0G0 EXPRESSION TAG SEQRES 1 A 83 GLY ALA MET GLY ASP LEU PRO SER ALA PHE GLU GLU LYS SEQRES 2 A 83 ALA ILE GLU LYS VAL ASP ASP LEU LEU GLU SER TYR MET SEQRES 3 A 83 GLY ILE ARG ASP THR GLU LEU ALA ALA THR MET VAL GLU SEQRES 4 A 83 LEU GLY LYS ASP LYS ARG ASN PRO ASP GLU LEU ALA GLU SEQRES 5 A 83 ALA LEU ASP GLU ARG LEU GLY ASP PHE ALA PHE PRO ASP SEQRES 6 A 83 GLU PHE VAL PHE ASP VAL TRP GLY ALA ILE GLY ASP ALA SEQRES 7 A 83 LYS VAL GLY ARG TYR HELIX 1 AA1 SER A 4 MET A 22 1 19 HELIX 2 AA2 ASP A 26 LYS A 40 1 15 HELIX 3 AA3 ASN A 42 LEU A 54 1 13 HELIX 4 AA4 PRO A 60 GLY A 77 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1