HEADER TRANSFERASE 09-MAR-21 7NTH TITLE STRUCTURE OF TAK1 IN COMPLEX WITH COMPOUND 54 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7,TGF-BETA- COMPND 3 ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TRANSFORMING GROWTH FACTOR-BETA-ACTIVATED KINASE 1,TGF-BETA- COMPND 6 ACTIVATED KINASE 1,MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7- COMPND 7 INTERACTING PROTEIN 1,TGF-BETA-ACTIVATED KINASE 1-BINDING PROTEIN 1, COMPND 8 TAK1-BINDING PROTEIN 1; COMPND 9 EC: 2.7.11.25; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP3K7, TAK1, TAB1, MAP3K7IP1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.N.VEERMAN,Y.B.BRUSEKER,E.DAMEN,E.H.HEIJNE,W.VAN BRUGGEN, AUTHOR 2 K.F.W.HEKKING,R.WINKEL,C.D.HUPP,A.D.KEEFE,J.LIU,H.A.THOMSON,Y.ZHANG, AUTHOR 3 J.W.CUOZZO,A.J.MCRINER,M.J.MULVIHILL,P.VAN RIJNSBERGEN,B.ZECH, AUTHOR 4 L.M.RENZETTI,L.BABISS,G.MUELLER REVDAT 2 05-MAY-21 7NTH 1 JRNL REVDAT 1 07-APR-21 7NTH 0 JRNL AUTH J.J.N.VEERMAN,Y.B.BRUSEKER,E.DAMEN,E.H.HEIJNE,W.VAN BRUGGEN, JRNL AUTH 2 K.F.W.HEKKING,R.WINKEL,C.D.HUPP,A.D.KEEFE,J.LIU,H.A.THOMSON, JRNL AUTH 3 Y.ZHANG,J.W.CUOZZO,A.J.MCRINER,M.J.MULVIHILL, JRNL AUTH 4 P.VAN RIJNSBERGEN,B.ZECH,L.M.RENZETTI,L.BABISS,G.MULLER JRNL TITL DISCOVERY OF 2,4-1 H -IMIDAZOLE CARBOXAMIDES AS POTENT AND JRNL TITL 2 SELECTIVE TAK1 INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 12 555 2021 JRNL REFN ISSN 1948-5875 JRNL PMID 33859795 JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00547 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 37933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1976 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2863 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2341 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.08000 REMARK 3 B22 (A**2) : -0.84000 REMARK 3 B33 (A**2) : 4.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.307 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2585 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2365 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3513 ; 1.582 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5489 ; 0.993 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 6.266 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;35.663 ;23.273 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 416 ;16.202 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.707 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2830 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 546 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7NTH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40707 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 29.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.44500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0158 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.30 M SODIUM CHLORIDE, 0.60 M SODIUM REMARK 280 CITRATE, 0.10 M TRIS-HCL PH 7.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.21050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.39150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.72450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.21050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.39150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.72450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.21050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 67.39150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.72450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.21050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 67.39150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.72450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1412 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 179 REMARK 465 CYS A 180 REMARK 465 ASP A 181 REMARK 465 ILE A 182 REMARK 465 GLN A 183 REMARK 465 THR A 184 REMARK 465 HIS A 185 REMARK 465 MET A 186 REMARK 465 THR A 187 REMARK 465 ASN A 188 REMARK 465 ASN A 189 REMARK 465 LYS A 190 REMARK 465 GLU A 497 REMARK 465 GLN A 498 REMARK 465 SER A 499 REMARK 465 VAL A 500 REMARK 465 VAL A 501 REMARK 465 THR A 502 REMARK 465 ALA A 503 REMARK 465 PRO A 504 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1105 O HOH A 1329 2.01 REMARK 500 O HOH A 1166 O HOH A 1356 2.04 REMARK 500 O HOH A 1190 O HOH A 1409 2.05 REMARK 500 O HOH A 1244 O HOH A 1289 2.08 REMARK 500 O HOH A 1325 O HOH A 1335 2.11 REMARK 500 OE1 GLU A 486 O HOH A 1105 2.12 REMARK 500 OE1 GLN A 299 O HOH A 1106 2.18 REMARK 500 O HOH A 1373 O HOH A 1415 2.18 REMARK 500 O HOH A 1217 O HOH A 1279 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1435 O HOH A 1435 2655 1.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 303 O - C - N ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 39 -158.68 -97.47 REMARK 500 GLU A 40 126.88 -33.97 REMARK 500 ARG A 155 -8.71 79.57 REMARK 500 ASP A 156 50.79 -143.17 REMARK 500 ASP A 175 77.98 61.78 REMARK 500 GLN A 299 -7.13 -142.25 REMARK 500 HIS A 468 115.00 -17.26 REMARK 500 PRO A 472 93.27 -55.81 REMARK 500 GLU A 474 -4.04 58.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 303 19.80 REMARK 500 GLN A 303 10.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1446 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1447 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1448 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1449 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH A1450 DISTANCE = 7.70 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URW A 1005 DBREF 7NTH A 31 303 UNP O43318 M3K7_HUMAN 31 303 DBREF 7NTH A 468 504 UNP Q15750 TAB1_HUMAN 468 504 SEQADV 7NTH GLY A 26 UNP O43318 EXPRESSION TAG SEQADV 7NTH SER A 27 UNP O43318 EXPRESSION TAG SEQADV 7NTH LEU A 28 UNP O43318 EXPRESSION TAG SEQADV 7NTH HIS A 29 UNP O43318 EXPRESSION TAG SEQADV 7NTH MET A 30 UNP O43318 EXPRESSION TAG SEQRES 1 A 315 GLY SER LEU HIS MET ILE ASP TYR LYS GLU ILE GLU VAL SEQRES 2 A 315 GLU GLU VAL VAL GLY ARG GLY ALA PHE GLY VAL VAL CYS SEQRES 3 A 315 LYS ALA LYS TRP ARG ALA LYS ASP VAL ALA ILE LYS GLN SEQRES 4 A 315 ILE GLU SER GLU SER GLU ARG LYS ALA PHE ILE VAL GLU SEQRES 5 A 315 LEU ARG GLN LEU SER ARG VAL ASN HIS PRO ASN ILE VAL SEQRES 6 A 315 LYS LEU TYR GLY ALA CYS LEU ASN PRO VAL CYS LEU VAL SEQRES 7 A 315 MET GLU TYR ALA GLU GLY GLY SER LEU TYR ASN VAL LEU SEQRES 8 A 315 HIS GLY ALA GLU PRO LEU PRO TYR TYR THR ALA ALA HIS SEQRES 9 A 315 ALA MET SER TRP CYS LEU GLN CYS SER GLN GLY VAL ALA SEQRES 10 A 315 TYR LEU HIS SER MET GLN PRO LYS ALA LEU ILE HIS ARG SEQRES 11 A 315 ASP LEU LYS PRO PRO ASN LEU LEU LEU VAL ALA GLY GLY SEQRES 12 A 315 THR VAL LEU LYS ILE CYS ASP PHE GLY THR ALA CYS ASP SEQRES 13 A 315 ILE GLN THR HIS MET THR ASN ASN LYS GLY SER ALA ALA SEQRES 14 A 315 TRP MET ALA PRO GLU VAL PHE GLU GLY SER ASN TYR SER SEQRES 15 A 315 GLU LYS CYS ASP VAL PHE SER TRP GLY ILE ILE LEU TRP SEQRES 16 A 315 GLU VAL ILE THR ARG ARG LYS PRO PHE ASP GLU ILE GLY SEQRES 17 A 315 GLY PRO ALA PHE ARG ILE MET TRP ALA VAL HIS ASN GLY SEQRES 18 A 315 THR ARG PRO PRO LEU ILE LYS ASN LEU PRO LYS PRO ILE SEQRES 19 A 315 GLU SER LEU MET THR ARG CYS TRP SER LYS ASP PRO SER SEQRES 20 A 315 GLN ARG PRO SER MET GLU GLU ILE VAL LYS ILE MET THR SEQRES 21 A 315 HIS LEU MET ARG TYR PHE PRO GLY ALA ASP GLU PRO LEU SEQRES 22 A 315 GLN TYR PRO CYS GLN HIS SER LEU PRO PRO GLY GLU ASP SEQRES 23 A 315 GLY ARG VAL GLU PRO TYR VAL ASP PHE ALA GLU PHE TYR SEQRES 24 A 315 ARG LEU TRP SER VAL ASP HIS GLY GLU GLN SER VAL VAL SEQRES 25 A 315 THR ALA PRO HET GOL A1001 6 HET GOL A1002 6 HET GOL A1003 6 HET DMS A1004 4 HET URW A1005 78 HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETNAM URW 2-[[5-[[2-[BIS(FLUORANYL)METHOXY]PHENYL]METHYL- HETNAM 2 URW [(2~{R})-1-(METHYLAMINO)-1-OXIDANYLIDENE-PROPAN-2- HETNAM 3 URW YL]CARBAMOYL]-1~{H}-IMIDAZOL-2-YL]CARBONYL]ISOINDOLE- HETNAM 4 URW 5-CARBOXAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 DMS C2 H6 O S FORMUL 6 URW C26 H24 F2 N6 O5 FORMUL 7 HOH *350(H2 O) HELIX 1 AA1 ASP A 32 LYS A 34 5 3 HELIX 2 AA2 SER A 67 SER A 69 5 3 HELIX 3 AA3 GLU A 70 VAL A 84 1 15 HELIX 4 AA4 LEU A 112 GLY A 118 1 7 HELIX 5 AA5 THR A 126 SER A 146 1 21 HELIX 6 AA6 LYS A 158 PRO A 160 5 3 HELIX 7 AA7 SER A 192 MET A 196 5 5 HELIX 8 AA8 ALA A 197 GLU A 202 1 6 HELIX 9 AA9 GLU A 208 ARG A 225 1 18 HELIX 10 AB1 PRO A 235 ASN A 245 1 11 HELIX 11 AB2 PRO A 256 TRP A 267 1 12 HELIX 12 AB3 ASP A 270 ARG A 274 5 5 HELIX 13 AB4 SER A 276 ARG A 289 1 14 HELIX 14 AB5 PHE A 484 HIS A 495 1 12 SHEET 1 AA1 6 HIS A 29 MET A 30 0 SHEET 2 AA1 6 LEU A 92 CYS A 96 1 O ALA A 95 N HIS A 29 SHEET 3 AA1 6 CYS A 101 GLU A 105 -1 O VAL A 103 N TYR A 93 SHEET 4 AA1 6 ASP A 59 GLN A 64 -1 N ALA A 61 O MET A 104 SHEET 5 AA1 6 VAL A 49 TRP A 55 -1 N CYS A 51 O ILE A 62 SHEET 6 AA1 6 ILE A 36 ARG A 44 -1 N GLU A 40 O LYS A 52 SHEET 1 AA2 3 GLY A 109 SER A 111 0 SHEET 2 AA2 3 LEU A 162 VAL A 165 -1 O LEU A 164 N GLY A 110 SHEET 3 AA2 3 VAL A 170 ILE A 173 -1 O LYS A 172 N LEU A 163 SHEET 1 AA3 2 LEU A 122 PRO A 123 0 SHEET 2 AA3 2 PRO A 301 CYS A 302 -1 O CYS A 302 N LEU A 122 SHEET 1 AA4 2 LEU A 251 ILE A 252 0 SHEET 2 AA4 2 ARG A 477 VAL A 478 1 O VAL A 478 N LEU A 251 CISPEP 1 ASN A 98 PRO A 99 0 -8.22 CISPEP 2 GLU A 120 PRO A 121 0 -1.10 CISPEP 3 GLN A 148 PRO A 149 0 8.39 SITE 1 AC1 5 PRO A 121 GLN A 299 TYR A 300 PRO A 301 SITE 2 AC1 5 HIS A 495 SITE 1 AC2 7 ARG A 289 TYR A 290 GLN A 303 ASP A 494 SITE 2 AC2 7 HOH A1158 HOH A1189 HOH A1224 SITE 1 AC3 3 SER A 132 THR A 169 ASP A 295 SITE 1 AC4 4 PRO A 258 TYR A 488 TRP A 491 HOH A1278 SITE 1 AC5 24 VAL A 42 GLY A 43 ARG A 44 GLY A 45 SITE 2 AC5 24 LYS A 63 VAL A 90 MET A 104 GLU A 105 SITE 3 AC5 24 TYR A 106 ALA A 107 GLY A 109 GLY A 110 SITE 4 AC5 24 SER A 111 ASN A 114 PRO A 160 LEU A 162 SITE 5 AC5 24 LEU A 163 ASP A 175 HOH A1114 HOH A1131 SITE 6 AC5 24 HOH A1219 HOH A1255 HOH A1267 HOH A1276 CRYST1 58.421 134.783 145.449 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017117 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006875 0.00000