HEADER CELL ADHESION 10-MAR-21 7NTJ TITLE PALS1 PDZ1 DOMAIN WITH SARS-COV-1_E PBM COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAGUK P55 SUBFAMILY MEMBER 5; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ENVELOPE SMALL MEMBRANE PROTEIN; COMPND 7 CHAIN: G, C; COMPND 8 SYNONYM: E PROTEIN,SM PROTEIN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MPP5, PALS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CODON+; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS; SOURCE 12 ORGANISM_COMMON: SARS-COV; SOURCE 13 ORGANISM_TAXID: 694009 KEYWDS CELL POLARITY, PALS1, SARS-COV-1, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.JAVORSKY,M.KVANSAKUL REVDAT 3 31-JAN-24 7NTJ 1 REMARK REVDAT 2 21-JUL-21 7NTJ 1 JRNL REMARK REVDAT 1 16-JUN-21 7NTJ 0 JRNL AUTH A.JAVORSKY,P.O.HUMBERT,M.KVANSAKUL JRNL TITL STRUCTURAL BASIS OF CORONAVIRUS E PROTEIN INTERACTIONS WITH JRNL TITL 2 HUMAN PALS1 PDZ DOMAIN. JRNL REF COMMUN BIOL V. 4 724 2021 JRNL REFN ESSN 2399-3642 JRNL PMID 34117354 JRNL DOI 10.1038/S42003-021-02250-7 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 16269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7600 - 3.1500 0.98 2596 147 0.1494 0.1604 REMARK 3 2 3.1500 - 2.5000 0.97 2588 136 0.1574 0.2111 REMARK 3 3 2.5000 - 2.1900 0.97 2620 118 0.1435 0.1876 REMARK 3 4 2.1900 - 1.9900 0.96 2580 135 0.1430 0.1919 REMARK 3 5 1.9900 - 1.8500 0.96 2571 129 0.1581 0.2018 REMARK 3 6 1.8500 - 1.7400 0.94 2541 108 0.1731 0.2231 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.142 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.913 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1389 REMARK 3 ANGLE : 0.839 1871 REMARK 3 CHIRALITY : 0.062 229 REMARK 3 PLANARITY : 0.005 242 REMARK 3 DIHEDRAL : 27.127 529 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 250 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2876 -14.4621 -8.1372 REMARK 3 T TENSOR REMARK 3 T11: 0.1516 T22: 0.1187 REMARK 3 T33: 0.1573 T12: -0.0023 REMARK 3 T13: -0.0120 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.0483 L22: 3.5874 REMARK 3 L33: 2.2381 L12: -0.4296 REMARK 3 L13: 0.1039 L23: -1.2335 REMARK 3 S TENSOR REMARK 3 S11: 0.0963 S12: -0.1573 S13: -0.1848 REMARK 3 S21: 0.4009 S22: 0.1402 S23: -0.0184 REMARK 3 S31: -0.0416 S32: -0.0503 S33: 0.0125 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 262 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5284 -2.2571 -19.9335 REMARK 3 T TENSOR REMARK 3 T11: 0.1282 T22: 0.1524 REMARK 3 T33: 0.1231 T12: 0.0087 REMARK 3 T13: 0.0528 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 5.4058 L22: 2.2687 REMARK 3 L33: 5.9630 L12: -0.0550 REMARK 3 L13: 4.2361 L23: -2.3670 REMARK 3 S TENSOR REMARK 3 S11: 0.0225 S12: -0.0293 S13: 0.3717 REMARK 3 S21: 0.3255 S22: -0.1159 S23: 0.1113 REMARK 3 S31: -0.4768 S32: -0.2749 S33: 0.0284 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 269 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9726 -21.8559 -19.4357 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.1245 REMARK 3 T33: 0.1698 T12: -0.0208 REMARK 3 T13: -0.0039 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 3.6153 L22: 5.6923 REMARK 3 L33: 4.2751 L12: 4.0836 REMARK 3 L13: -2.2290 L23: -3.9893 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: -0.2108 S13: -0.5645 REMARK 3 S21: -0.2723 S22: -0.2296 S23: -0.4207 REMARK 3 S31: 0.3246 S32: -0.0731 S33: 0.1005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 277 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6680 -19.5400 -20.8361 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.1309 REMARK 3 T33: 0.1544 T12: 0.0294 REMARK 3 T13: 0.0086 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 4.1040 L22: 2.2031 REMARK 3 L33: 2.6458 L12: 1.6069 REMARK 3 L13: -2.0841 L23: -0.7894 REMARK 3 S TENSOR REMARK 3 S11: 0.2081 S12: 0.0064 S13: -0.4553 REMARK 3 S21: -0.0998 S22: -0.2766 S23: -0.1556 REMARK 3 S31: 0.0566 S32: 0.0790 S33: 0.0545 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 284 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1547 -9.9467 -23.9677 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.1561 REMARK 3 T33: 0.1258 T12: 0.0207 REMARK 3 T13: 0.0380 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 6.3863 L22: 5.3946 REMARK 3 L33: 8.2855 L12: 1.1159 REMARK 3 L13: 5.4421 L23: -0.3572 REMARK 3 S TENSOR REMARK 3 S11: 0.1090 S12: 0.2258 S13: -0.0682 REMARK 3 S21: -0.4987 S22: -0.1209 S23: -0.2176 REMARK 3 S31: -0.0482 S32: 0.6119 S33: -0.1278 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5541 -17.8059 -14.1989 REMARK 3 T TENSOR REMARK 3 T11: 0.1355 T22: 0.1384 REMARK 3 T33: 0.1109 T12: 0.0154 REMARK 3 T13: 0.0045 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.9203 L22: 1.8075 REMARK 3 L33: 1.1602 L12: 0.0600 REMARK 3 L13: -0.0823 L23: 0.5734 REMARK 3 S TENSOR REMARK 3 S11: -0.0330 S12: -0.0453 S13: -0.1841 REMARK 3 S21: 0.0392 S22: 0.0753 S23: -0.0208 REMARK 3 S31: 0.0538 S32: 0.0749 S33: 0.0042 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 305 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7900 -15.9507 -9.2764 REMARK 3 T TENSOR REMARK 3 T11: 0.1809 T22: 0.1684 REMARK 3 T33: 0.1336 T12: 0.0114 REMARK 3 T13: 0.0059 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 2.4201 L22: 4.1671 REMARK 3 L33: 2.2344 L12: 2.0408 REMARK 3 L13: 0.7171 L23: 2.5511 REMARK 3 S TENSOR REMARK 3 S11: 0.1572 S12: -0.3382 S13: -0.2184 REMARK 3 S21: 0.2798 S22: 0.0018 S23: -0.0206 REMARK 3 S31: 0.2992 S32: -0.2937 S33: 0.1017 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 314 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6851 -8.8064 -16.3550 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.1397 REMARK 3 T33: 0.1199 T12: 0.0156 REMARK 3 T13: 0.0043 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 4.2722 L22: 5.2742 REMARK 3 L33: 1.3016 L12: 2.2901 REMARK 3 L13: 0.1214 L23: -1.0723 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: -0.0718 S13: 0.2604 REMARK 3 S21: 0.1446 S22: -0.0579 S23: -0.1290 REMARK 3 S31: -0.1520 S32: 0.1015 S33: 0.0585 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 324 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5525 -11.9288 -10.3832 REMARK 3 T TENSOR REMARK 3 T11: 0.1230 T22: 0.1498 REMARK 3 T33: 0.1502 T12: 0.0127 REMARK 3 T13: 0.0072 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.6143 L22: 4.4518 REMARK 3 L33: 2.1223 L12: -0.0354 REMARK 3 L13: 0.1928 L23: -0.6561 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: 0.0338 S13: -0.0778 REMARK 3 S21: 0.3799 S22: -0.0876 S23: 0.0019 REMARK 3 S31: 0.0687 S32: 0.1984 S33: -0.0273 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 208 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8072 -12.9817 -24.1255 REMARK 3 T TENSOR REMARK 3 T11: 0.1821 T22: 0.1565 REMARK 3 T33: 0.1465 T12: -0.0032 REMARK 3 T13: 0.0396 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 2.2436 L22: 4.3997 REMARK 3 L33: 0.8349 L12: -0.5305 REMARK 3 L13: -0.3726 L23: -1.6765 REMARK 3 S TENSOR REMARK 3 S11: -0.0997 S12: 0.2118 S13: -0.5149 REMARK 3 S21: -0.3236 S22: -0.2802 S23: 0.2378 REMARK 3 S31: 0.0715 S32: -0.1438 S33: 0.0045 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8332 2.2032 0.7134 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.1775 REMARK 3 T33: 0.1609 T12: 0.0215 REMARK 3 T13: 0.0204 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 3.2174 L22: 1.6657 REMARK 3 L33: 2.9336 L12: 0.6424 REMARK 3 L13: -0.3985 L23: -0.1442 REMARK 3 S TENSOR REMARK 3 S11: 0.1088 S12: 0.1360 S13: 0.1651 REMARK 3 S21: -0.1920 S22: -0.1104 S23: -0.2650 REMARK 3 S31: 0.0129 S32: 0.0217 S33: -0.0201 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9275 -10.4740 7.9129 REMARK 3 T TENSOR REMARK 3 T11: 0.1954 T22: 0.1415 REMARK 3 T33: 0.1065 T12: -0.0519 REMARK 3 T13: -0.0095 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 2.3485 L22: 6.4480 REMARK 3 L33: 2.8892 L12: 0.5387 REMARK 3 L13: -1.4014 L23: -3.9208 REMARK 3 S TENSOR REMARK 3 S11: -0.1136 S12: 0.1389 S13: 0.0176 REMARK 3 S21: -0.1474 S22: 0.3493 S23: 0.1342 REMARK 3 S31: 0.4848 S32: -0.2092 S33: 0.0778 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 269 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6691 7.5333 5.5131 REMARK 3 T TENSOR REMARK 3 T11: 0.1549 T22: 0.1198 REMARK 3 T33: 0.1335 T12: 0.0100 REMARK 3 T13: 0.0001 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 3.7514 L22: 2.3349 REMARK 3 L33: 7.8129 L12: -0.2832 REMARK 3 L13: 1.3173 L23: -0.4849 REMARK 3 S TENSOR REMARK 3 S11: -0.1493 S12: -0.0865 S13: 0.1314 REMARK 3 S21: 0.1331 S22: -0.0236 S23: -0.0387 REMARK 3 S31: -0.5915 S32: -0.1487 S33: 0.0257 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6394 -2.1578 16.7145 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.1580 REMARK 3 T33: 0.1173 T12: -0.0075 REMARK 3 T13: -0.0438 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 3.5151 L22: 6.2332 REMARK 3 L33: 7.8016 L12: 0.6308 REMARK 3 L13: -5.0909 L23: 0.6340 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: -0.3995 S13: -0.1478 REMARK 3 S21: 0.5252 S22: 0.0674 S23: -0.1398 REMARK 3 S31: 0.5803 S32: 0.1152 S33: 0.0297 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7051 4.3207 0.0810 REMARK 3 T TENSOR REMARK 3 T11: 0.1190 T22: 0.1209 REMARK 3 T33: 0.1379 T12: 0.0045 REMARK 3 T13: 0.0155 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 1.7743 L22: 1.5122 REMARK 3 L33: 1.5152 L12: -0.2235 REMARK 3 L13: -0.0653 L23: 0.3837 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.0298 S13: 0.1336 REMARK 3 S21: 0.0012 S22: 0.0450 S23: -0.0036 REMARK 3 S31: 0.0173 S32: 0.0167 S33: -0.0328 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 314 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3788 -2.3181 0.4307 REMARK 3 T TENSOR REMARK 3 T11: 0.1285 T22: 0.1351 REMARK 3 T33: 0.0967 T12: 0.0057 REMARK 3 T13: 0.0017 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.5488 L22: 1.5208 REMARK 3 L33: 1.3053 L12: 0.2148 REMARK 3 L13: -0.7753 L23: -0.0819 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: 0.1458 S13: -0.0689 REMARK 3 S21: 0.0137 S22: 0.0063 S23: -0.0438 REMARK 3 S31: 0.0396 S32: -0.0085 S33: 0.0099 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 205 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1158 2.5280 8.4994 REMARK 3 T TENSOR REMARK 3 T11: 0.1247 T22: 0.1921 REMARK 3 T33: 0.2458 T12: -0.0068 REMARK 3 T13: -0.0403 T23: -0.0566 REMARK 3 L TENSOR REMARK 3 L11: 2.3771 L22: 2.6568 REMARK 3 L33: 6.0836 L12: 1.4773 REMARK 3 L13: -1.6855 L23: 1.0586 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.3262 S13: 0.4579 REMARK 3 S21: -0.3781 S22: -0.1494 S23: 0.5352 REMARK 3 S31: -0.1835 S32: -0.5349 S33: 0.0083 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NTJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114563. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16270 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 38.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.15000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.18.2_3874+SVN REMARK 200 STARTING MODEL: 4UU6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH6.5, 25% W/V PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 336 REMARK 465 GLU G 204 REMARK 465 GLY G 205 REMARK 465 VAL G 206 REMARK 465 PRO G 207 REMARK 465 GLN A 336 REMARK 465 GLU C 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 460 O HOH B 477 2.14 REMARK 500 O HOH A 490 O HOH A 528 2.16 REMARK 500 O HOH A 518 O HOH A 545 2.18 REMARK 500 O HOH A 434 O HOH A 538 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH G 305 O HOH A 508 1554 2.09 REMARK 500 O HOH B 503 O HOH C 301 1544 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET B 275 -117.77 54.73 REMARK 500 MET A 275 -115.59 55.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 529 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH G 314 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A 546 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 547 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A 548 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 549 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A 550 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH C 315 DISTANCE = 6.91 ANGSTROMS DBREF 7NTJ B 255 336 UNP Q8N3R9 MPP5_HUMAN 255 336 DBREF 7NTJ G 204 211 UNP P59637 VEMP_SARS 69 76 DBREF 7NTJ A 255 336 UNP Q8N3R9 MPP5_HUMAN 255 336 DBREF 7NTJ C 204 211 UNP P59637 VEMP_SARS 69 76 SEQADV 7NTJ GLY B 250 UNP Q8N3R9 EXPRESSION TAG SEQADV 7NTJ PRO B 251 UNP Q8N3R9 EXPRESSION TAG SEQADV 7NTJ LEU B 252 UNP Q8N3R9 EXPRESSION TAG SEQADV 7NTJ GLY B 253 UNP Q8N3R9 EXPRESSION TAG SEQADV 7NTJ SER B 254 UNP Q8N3R9 EXPRESSION TAG SEQADV 7NTJ GLY A 250 UNP Q8N3R9 EXPRESSION TAG SEQADV 7NTJ PRO A 251 UNP Q8N3R9 EXPRESSION TAG SEQADV 7NTJ LEU A 252 UNP Q8N3R9 EXPRESSION TAG SEQADV 7NTJ GLY A 253 UNP Q8N3R9 EXPRESSION TAG SEQADV 7NTJ SER A 254 UNP Q8N3R9 EXPRESSION TAG SEQRES 1 B 87 GLY PRO LEU GLY SER LYS ILE VAL ARG ILE GLU LYS ALA SEQRES 2 B 87 ARG ASP ILE PRO LEU GLY ALA THR VAL ARG ASN GLU MET SEQRES 3 B 87 ASP SER VAL ILE ILE SER ARG ILE VAL LYS GLY GLY ALA SEQRES 4 B 87 ALA GLU LYS SER GLY LEU LEU HIS GLU GLY ASP GLU VAL SEQRES 5 B 87 LEU GLU ILE ASN GLY ILE GLU ILE ARG GLY LYS ASP VAL SEQRES 6 B 87 ASN GLU VAL PHE ASP LEU LEU SER ASP MET HIS GLY THR SEQRES 7 B 87 LEU THR PHE VAL LEU ILE PRO SER GLN SEQRES 1 G 8 GLU GLY VAL PRO ASP LEU LEU VAL SEQRES 1 A 87 GLY PRO LEU GLY SER LYS ILE VAL ARG ILE GLU LYS ALA SEQRES 2 A 87 ARG ASP ILE PRO LEU GLY ALA THR VAL ARG ASN GLU MET SEQRES 3 A 87 ASP SER VAL ILE ILE SER ARG ILE VAL LYS GLY GLY ALA SEQRES 4 A 87 ALA GLU LYS SER GLY LEU LEU HIS GLU GLY ASP GLU VAL SEQRES 5 A 87 LEU GLU ILE ASN GLY ILE GLU ILE ARG GLY LYS ASP VAL SEQRES 6 A 87 ASN GLU VAL PHE ASP LEU LEU SER ASP MET HIS GLY THR SEQRES 7 A 87 LEU THR PHE VAL LEU ILE PRO SER GLN SEQRES 1 C 8 GLU GLY VAL PRO ASP LEU LEU VAL FORMUL 5 HOH *308(H2 O) SHEET 1 A 3 LYS B 255 LYS B 261 0 SHEET 2 A 3 GLY B 326 ILE B 333 -1 N LEU B 332 O LYS B 255 SHEET 3 A 3 GLU B 300 ILE B 304 -1 N GLU B 303 O VAL B 331 SHEET 1 B 2 ALA B 269 GLU B 274 0 SHEET 2 B 2 SER B 277 ILE B 283 -1 N ARG B 282 O THR B 270 SHEET 1 C 3 SER A 254 LYS A 261 0 SHEET 2 C 3 GLY A 326 ILE A 333 -1 N LEU A 332 O LYS A 255 SHEET 3 C 3 GLU A 300 ILE A 304 -1 N GLU A 303 O VAL A 331 SHEET 1 D 2 ALA A 269 GLU A 274 0 SHEET 2 D 2 SER A 277 ILE A 283 -1 N ARG A 282 O THR A 270 CRYST1 28.151 39.963 40.832 94.90 108.78 100.84 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035523 0.006803 0.013309 0.00000 SCALE2 0.000000 0.025478 0.004048 0.00000 SCALE3 0.000000 0.000000 0.026192 0.00000