HEADER LIGASE 11-MAR-21 7NU1 TITLE CRYSTAL STRUCTURE OF NEISSERIA GONORRHOEAE LEURS E169G MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LEUCYL-TRNA SYNTHETASE; COMPND 5 SYNONYM: LEUCYL-TRNA SYNTHETASE,LEURS; COMPND 6 EC: 6.1.1.4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 STRAIN: NCCP11945; SOURCE 5 GENE: LEUS, NGK_0009; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETRUK KEYWDS LIGAND-FREE STRUCTURE, ROSSMANN FOLD, LEUCYL-TRNA SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR L.PANG,S.V.STRELKOV,S.D.WEEKS REVDAT 3 31-JAN-24 7NU1 1 REMARK REVDAT 2 14-SEP-22 7NU1 1 JRNL REVDAT 1 31-AUG-22 7NU1 0 JRNL AUTH L.PANG,V.ZANKI,S.V.STRELKOV,A.VAN AERSCHOT,I.GRUIC-SOVULJ, JRNL AUTH 2 S.D.WEEKS JRNL TITL PARTITIONING OF THE INITIAL CATALYTIC STEPS OF LEUCYL-TRNA JRNL TITL 2 SYNTHETASE IS DRIVEN BY AN ACTIVE SITE PEPTIDE-PLANE FLIP. JRNL REF COMMUN BIOL V. 5 883 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 36038645 JRNL DOI 10.1038/S42003-022-03825-8 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9400 - 5.5600 1.00 2927 161 0.1937 0.2435 REMARK 3 2 5.5500 - 4.4200 1.00 2798 162 0.1778 0.2309 REMARK 3 3 4.4200 - 3.8700 1.00 2788 139 0.1730 0.2655 REMARK 3 4 3.8700 - 3.5200 1.00 2748 137 0.1970 0.2520 REMARK 3 5 3.5200 - 3.2700 1.00 2747 138 0.2116 0.2407 REMARK 3 6 3.2700 - 3.0700 1.00 2740 133 0.2322 0.3048 REMARK 3 7 3.0700 - 2.9200 1.00 2743 135 0.2363 0.2741 REMARK 3 8 2.9200 - 2.7900 1.00 2723 151 0.2424 0.3126 REMARK 3 9 2.7900 - 2.6900 1.00 2716 136 0.2503 0.3039 REMARK 3 10 2.6900 - 2.5900 1.00 2699 133 0.2486 0.3063 REMARK 3 11 2.5900 - 2.5100 1.00 2691 147 0.2463 0.3077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4081 -11.5161 -38.6036 REMARK 3 T TENSOR REMARK 3 T11: 0.3006 T22: 0.3075 REMARK 3 T33: 0.2947 T12: 0.0777 REMARK 3 T13: -0.0081 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.5793 L22: 1.5337 REMARK 3 L33: 0.8198 L12: 1.1763 REMARK 3 L13: 0.7485 L23: 0.3530 REMARK 3 S TENSOR REMARK 3 S11: 0.0564 S12: 0.1325 S13: -0.0444 REMARK 3 S21: 0.0135 S22: 0.0092 S23: -0.0654 REMARK 3 S31: 0.2530 S32: 0.0791 S33: -0.0596 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4754 13.8068 -24.7838 REMARK 3 T TENSOR REMARK 3 T11: 0.3059 T22: 0.4110 REMARK 3 T33: 0.3652 T12: 0.0159 REMARK 3 T13: -0.0211 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.1983 L22: 0.8549 REMARK 3 L33: 0.3966 L12: 0.0649 REMARK 3 L13: 0.0093 L23: 0.0557 REMARK 3 S TENSOR REMARK 3 S11: 0.0352 S12: 0.0074 S13: -0.0218 REMARK 3 S21: -0.0000 S22: -0.0456 S23: 0.0270 REMARK 3 S31: -0.0496 S32: 0.0598 S33: 0.0120 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8724 34.6532 -13.5917 REMARK 3 T TENSOR REMARK 3 T11: 0.4371 T22: 0.3514 REMARK 3 T33: 0.3820 T12: -0.0045 REMARK 3 T13: 0.0145 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.4092 L22: 0.9874 REMARK 3 L33: 2.3903 L12: -0.2627 REMARK 3 L13: 0.6200 L23: -0.5021 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: -0.0241 S13: -0.1956 REMARK 3 S21: -0.0790 S22: 0.0305 S23: 0.1420 REMARK 3 S31: -0.0206 S32: -0.1074 S33: -0.0341 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 397 THROUGH 564 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7547 13.4035 -29.4889 REMARK 3 T TENSOR REMARK 3 T11: 0.3231 T22: 0.3131 REMARK 3 T33: 0.3042 T12: -0.0143 REMARK 3 T13: 0.0017 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.2105 L22: 0.9249 REMARK 3 L33: 0.6687 L12: -0.0625 REMARK 3 L13: -0.1118 L23: 0.0164 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: -0.0307 S13: 0.0683 REMARK 3 S21: 0.0303 S22: 0.0350 S23: -0.0259 REMARK 3 S31: -0.0960 S32: 0.0985 S33: -0.0218 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 565 THROUGH 634 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9476 -7.6892 -20.3401 REMARK 3 T TENSOR REMARK 3 T11: 0.5085 T22: 0.4657 REMARK 3 T33: 0.3418 T12: 0.1025 REMARK 3 T13: 0.0139 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 2.0992 L22: 1.4190 REMARK 3 L33: 1.8799 L12: 0.6039 REMARK 3 L13: -0.7321 L23: -0.3777 REMARK 3 S TENSOR REMARK 3 S11: -0.0887 S12: -0.4991 S13: -0.1584 REMARK 3 S21: 0.0413 S22: -0.0457 S23: 0.1398 REMARK 3 S31: 0.5892 S32: 0.0996 S33: 0.1781 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 635 THROUGH 817 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2693 -17.7877 -47.2895 REMARK 3 T TENSOR REMARK 3 T11: 0.3455 T22: 0.3512 REMARK 3 T33: 0.3953 T12: -0.0055 REMARK 3 T13: -0.0345 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 1.5779 L22: 1.5122 REMARK 3 L33: 2.1178 L12: 0.2184 REMARK 3 L13: 0.9111 L23: 0.2515 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: 0.0649 S13: -0.0558 REMARK 3 S21: -0.1481 S22: 0.0094 S23: 0.2826 REMARK 3 S31: 0.0027 S32: -0.0603 S33: -0.0478 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NU1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292112263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980114 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31960 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 19.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 1.04100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Q89 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HOLO PROTEIN AT 10 MG/ML IN 10 MM TRIS REMARK 280 PH 7, 100 MM NACL, 2.5 MM 2-MERCAPTOETHANOL WAS MIXED WITH 0.1 M REMARK 280 BIS-TRIS PROPANE PH 8.5, 0.1 M MGCL2, 20% W/V PEG 3350 AND A REMARK 280 CRYSTAL SEED STOCK IN A 0.75:1.0:0.25 (V/V) RATIO. THE SEED REMARK 280 STOCK WAS PREPARED IN THE SAME CRYSTALLIZATION BUFFER. SUITABLE REMARK 280 CRYSTALS WERE CRYOPROTECTED IN AN EQUILVALENT PRECIPITANT REMARK 280 SOLUTION SUPPLEMENTED WITH 22% V/V ETHYLENE GLYCOL., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.52450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.07950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.93800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 113.07950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.52450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.93800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PHE A 609 REMARK 465 ASP A 610 REMARK 465 ASP A 611 REMARK 465 LYS A 612 REMARK 465 GLY A 613 REMARK 465 ARG A 614 REMARK 465 PRO A 615 REMARK 465 VAL A 616 REMARK 465 SER A 617 REMARK 465 SER A 815 REMARK 465 GLU A 816 REMARK 465 ILE A 817 REMARK 465 GLU A 818 REMARK 465 VAL A 819 REMARK 465 MET A 820 REMARK 465 VAL A 821 REMARK 465 GLN A 822 REMARK 465 VAL A 823 REMARK 465 ASN A 824 REMARK 465 GLY A 825 REMARK 465 LYS A 826 REMARK 465 LEU A 827 REMARK 465 ARG A 828 REMARK 465 GLY A 829 REMARK 465 LYS A 830 REMARK 465 ILE A 831 REMARK 465 THR A 832 REMARK 465 VAL A 833 REMARK 465 ALA A 834 REMARK 465 ALA A 835 REMARK 465 ASP A 836 REMARK 465 ALA A 837 REMARK 465 SER A 838 REMARK 465 LYS A 839 REMARK 465 ALA A 840 REMARK 465 ASP A 841 REMARK 465 LEU A 842 REMARK 465 GLU A 843 REMARK 465 ALA A 844 REMARK 465 ALA A 845 REMARK 465 ALA A 846 REMARK 465 LEU A 847 REMARK 465 ALA A 848 REMARK 465 ASN A 849 REMARK 465 GLU A 850 REMARK 465 GLY A 851 REMARK 465 ALA A 852 REMARK 465 VAL A 853 REMARK 465 LYS A 854 REMARK 465 PHE A 855 REMARK 465 MET A 856 REMARK 465 GLU A 857 REMARK 465 GLY A 858 REMARK 465 LYS A 859 REMARK 465 PRO A 860 REMARK 465 ALA A 861 REMARK 465 LYS A 862 REMARK 465 LYS A 863 REMARK 465 ILE A 864 REMARK 465 ILE A 865 REMARK 465 VAL A 866 REMARK 465 VAL A 867 REMARK 465 PRO A 868 REMARK 465 GLY A 869 REMARK 465 ARG A 870 REMARK 465 LEU A 871 REMARK 465 VAL A 872 REMARK 465 ASN A 873 REMARK 465 ILE A 874 REMARK 465 VAL A 875 REMARK 465 VAL A 876 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 OE1 NE2 REMARK 470 LYS A 32 CD CE NZ REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 142 CE NZ REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 MET A 304 CG SD CE REMARK 470 THR A 306 OG1 CG2 REMARK 470 LYS A 309 CD CE NZ REMARK 470 LYS A 366 CD CE NZ REMARK 470 ASP A 373 CG OD1 OD2 REMARK 470 ARG A 380 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 383 CG CD OE1 OE2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 MET A 475 CG SD CE REMARK 470 LYS A 498 CD CE NZ REMARK 470 LYS A 521 CD CE NZ REMARK 470 GLU A 530 CD OE1 OE2 REMARK 470 LYS A 533 CD CE NZ REMARK 470 GLU A 546 CG CD OE1 OE2 REMARK 470 ASP A 593 CG OD1 OD2 REMARK 470 LYS A 594 CG CD CE NZ REMARK 470 VAL A 605 CG1 CG2 REMARK 470 GLU A 606 CG CD OE1 OE2 REMARK 470 THR A 608 OG1 CG2 REMARK 470 LYS A 621 CG CD CE NZ REMARK 470 ASP A 623 CG OD1 OD2 REMARK 470 LEU A 625 CG CD1 CD2 REMARK 470 ILE A 629 CG1 CG2 CD1 REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 LYS A 714 CD CE NZ REMARK 470 VAL A 813 CG1 CG2 REMARK 470 LYS A 814 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 132 -61.37 -100.47 REMARK 500 ASP A 403 -159.15 -84.73 REMARK 500 TRP A 512 10.92 -150.50 REMARK 500 ALA A 622 -86.06 -89.52 REMARK 500 SER A 630 -161.10 -102.89 REMARK 500 ARG A 736 -61.16 -124.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1115 DISTANCE = 5.87 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 449 SG REMARK 620 2 CYS A 452 SG 108.9 REMARK 620 3 CYS A 490 SG 105.1 106.4 REMARK 620 4 CYS A 493 SG 104.7 118.5 112.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7NU2 RELATED DB: PDB REMARK 900 RELATED ID: 7NU3 RELATED DB: PDB DBREF 7NU1 A 1 876 UNP B4RNT1 SYL_NEIG2 1 876 SEQADV 7NU1 GLY A 0 UNP B4RNT1 EXPRESSION TAG SEQADV 7NU1 GLY A 169 UNP B4RNT1 GLU 169 ENGINEERED MUTATION SEQADV 7NU1 ASN A 454 UNP B4RNT1 ASP 454 CONFLICT SEQADV 7NU1 ILE A 508 UNP B4RNT1 MET 508 CONFLICT SEQRES 1 A 877 GLY MET GLN GLU HIS TYR GLN PRO ALA ALA ILE GLU PRO SEQRES 2 A 877 ALA ALA GLN LYS LYS TRP ASP ASP ALA ARG ILE SER ASN SEQRES 3 A 877 VAL SER GLU ASP ALA SER LYS PRO LYS TYR TYR CYS LEU SEQRES 4 A 877 SER MET PHE PRO TYR PRO SER GLY LYS LEU HIS MET GLY SEQRES 5 A 877 HIS VAL ARG ASN TYR THR ILE GLY ASP VAL LEU SER ARG SEQRES 6 A 877 PHE LYS LEU LEU ASN GLY PHE ASN VAL MET GLN PRO MET SEQRES 7 A 877 GLY TRP ASP ALA PHE GLY MET PRO ALA GLU ASN ALA ALA SEQRES 8 A 877 MET LYS ASN ASN VAL ALA PRO ALA ALA TRP THR TYR ASP SEQRES 9 A 877 ASN ILE GLU TYR MET LYS THR GLN LEU LYS SER LEU GLY SEQRES 10 A 877 PHE ALA VAL ASP TRP GLU ARG GLU VAL ALA THR CYS LYS SEQRES 11 A 877 PRO GLU TYR TYR ARG TRP GLU GLN TRP LEU PHE THR LYS SEQRES 12 A 877 LEU PHE GLU LYS GLY ILE VAL TYR ARG LYS ASN GLY THR SEQRES 13 A 877 VAL ASN TRP ASP PRO VAL ASP GLN THR VAL LEU ALA ASN SEQRES 14 A 877 GLY GLN VAL ILE ASP GLY ARG GLY TRP ARG SER GLY ALA SEQRES 15 A 877 LEU ILE GLU LYS ARG GLU ILE PRO MET TYR TYR PHE LYS SEQRES 16 A 877 ILE THR ASP TYR ALA GLU GLU LEU LEU ASN ASP LEU ASP SEQRES 17 A 877 LYS LEU GLU HIS TRP PRO GLU GLN VAL LYS THR MET GLN SEQRES 18 A 877 ARG ASN TRP ILE GLY LYS SER ARG GLY MET THR VAL ARG SEQRES 19 A 877 PHE ALA VAL SER ASP ASP SER LYS GLN GLY LEU GLU GLY SEQRES 20 A 877 ASP TYR ALA LYS PHE LEU GLN VAL TYR THR THR ARG PRO SEQRES 21 A 877 ASP THR LEU MET GLY ALA THR TYR VAL ALA VAL ALA ALA SEQRES 22 A 877 GLU HIS PRO LEU ALA THR ALA ALA ALA ALA ASP LYS PRO SEQRES 23 A 877 GLU LEU GLN ALA PHE ILE ALA GLU CYS LYS ALA GLY SER SEQRES 24 A 877 VAL ALA GLU ALA ASP MET ALA THR MET GLU LYS LYS GLY SEQRES 25 A 877 VAL PRO THR GLY ARG TYR VAL VAL ASN PRO LEU ASN GLY SEQRES 26 A 877 ASP LYS LEU GLU VAL TRP ILE ALA ASN TYR VAL LEU TRP SEQRES 27 A 877 GLY TYR GLY ASP GLY ALA VAL MET ALA VAL PRO ALA HIS SEQRES 28 A 877 ASP GLU ARG ASP PHE GLU PHE ALA ALA LYS TYR ASN LEU SEQRES 29 A 877 PRO LYS LYS GLN VAL ILE ALA VAL GLY ASP ASN ALA PHE SEQRES 30 A 877 ASP ALA ASN ARG TRP GLN GLU TRP TYR GLY ASP LYS GLU SEQRES 31 A 877 ASN GLY VAL LEU VAL ASN SER GLY ASP LEU ASP GLY LEU SEQRES 32 A 877 ASP PHE GLN THR ALA PHE ASP ALA VAL ALA ALA LYS LEU SEQRES 33 A 877 GLN SER GLN GLY ALA GLY GLU PRO LYS THR GLN TYR ARG SEQRES 34 A 877 LEU ARG ASP TRP GLY ILE SER ARG GLN ARG TYR TRP GLY SEQRES 35 A 877 CYS PRO ILE PRO ILE VAL HIS CYS GLU LYS CYS GLY ASN SEQRES 36 A 877 VAL PRO VAL PRO ALA ASP GLN LEU PRO VAL VAL LEU PRO SEQRES 37 A 877 GLU ASN VAL VAL PRO ASP GLY MET GLY SER PRO LEU ALA SEQRES 38 A 877 LYS MET PRO GLU PHE TYR GLU THR SER CYS PRO CYS CYS SEQRES 39 A 877 GLY GLY ALA ALA LYS ARG GLU THR ASP THR MET ASP THR SEQRES 40 A 877 PHE ILE GLU SER SER TRP TYR PHE PHE ARG TYR MET SER SEQRES 41 A 877 PRO LYS PHE SER ASP GLY MET VAL SER ALA GLU SER ALA SEQRES 42 A 877 LYS TYR TRP GLY ALA VAL ASP GLN TYR ILE GLY GLY ILE SEQRES 43 A 877 GLU HIS ALA ILE LEU HIS LEU LEU TYR ALA ARG PHE PHE SEQRES 44 A 877 THR LYS LEU MET ARG ASP GLU GLY LEU VAL ASN VAL ASP SEQRES 45 A 877 GLU PRO PHE GLU ARG LEU LEU THR GLN GLY MET VAL VAL SEQRES 46 A 877 CYS GLU THR TYR TYR ARG GLU ASN ASP LYS GLY GLY LYS SEQRES 47 A 877 ASP TRP ILE ASN PRO ALA ASP VAL GLU LEU THR PHE ASP SEQRES 48 A 877 ASP LYS GLY ARG PRO VAL SER ALA VAL LEU LYS ALA ASP SEQRES 49 A 877 GLY LEU PRO VAL VAL ILE SER GLY THR GLU LYS MET SER SEQRES 50 A 877 LYS SER LYS ASN ASN GLY VAL ASP PRO GLN GLU LEU ILE SEQRES 51 A 877 ASN ALA TYR GLY ALA ASP THR ALA ARG LEU PHE MET MET SEQRES 52 A 877 PHE ALA ALA PRO PRO GLU GLN SER LEU GLU TRP SER ASP SEQRES 53 A 877 SER GLY VAL GLU GLY ALA HIS ARG PHE LEU ARG ARG LEU SEQRES 54 A 877 TRP ARG THR VAL TYR GLU TYR LEU LYS GLN GLY GLY ALA SEQRES 55 A 877 VAL LYS ALA PHE ALA GLY ASN GLN ASP GLY LEU SER LYS SEQRES 56 A 877 GLU LEU LYS ASP LEU ARG HIS LYS LEU HIS SER THR THR SEQRES 57 A 877 ALA LYS VAL SER ASP ASP TYR GLY ARG ARG GLN GLN PHE SEQRES 58 A 877 ASN THR ALA ILE ALA ALA VAL MET GLU LEU LEU ASN GLN SEQRES 59 A 877 TYR ASP LYS THR ASP THR GLY SER GLU GLN GLY ARG ALA SEQRES 60 A 877 VAL ALA GLN GLU VAL LEU GLU ALA ALA VAL ARG LEU LEU SEQRES 61 A 877 TRP PRO ILE VAL PRO HIS ILE CYS GLU THR LEU TRP SER SEQRES 62 A 877 GLU LEU ASN GLY ALA LYS LEU TRP GLU ALA GLY TRP PRO SEQRES 63 A 877 THR VAL ASP GLU ALA ALA LEU VAL LYS SER GLU ILE GLU SEQRES 64 A 877 VAL MET VAL GLN VAL ASN GLY LYS LEU ARG GLY LYS ILE SEQRES 65 A 877 THR VAL ALA ALA ASP ALA SER LYS ALA ASP LEU GLU ALA SEQRES 66 A 877 ALA ALA LEU ALA ASN GLU GLY ALA VAL LYS PHE MET GLU SEQRES 67 A 877 GLY LYS PRO ALA LYS LYS ILE ILE VAL VAL PRO GLY ARG SEQRES 68 A 877 LEU VAL ASN ILE VAL VAL HET ZN A 901 1 HET MG A 902 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 2 ZN ZN 2+ FORMUL 3 MG MG 2+ FORMUL 4 HOH *115(H2 O) HELIX 1 AA1 GLN A 6 ARG A 22 1 17 HELIX 2 AA2 HIS A 49 ASN A 69 1 21 HELIX 3 AA3 MET A 84 ASN A 94 1 11 HELIX 4 AA4 ALA A 96 LEU A 115 1 20 HELIX 5 AA5 ASP A 120 GLU A 124 5 5 HELIX 6 AA6 LYS A 129 LYS A 146 1 18 HELIX 7 AA7 ALA A 167 GLY A 169 5 3 HELIX 8 AA8 ILE A 195 ASP A 197 5 3 HELIX 9 AA9 TYR A 198 ASP A 205 1 8 HELIX 10 AB1 LEU A 206 LEU A 209 5 4 HELIX 11 AB2 PRO A 213 GLY A 225 1 13 HELIX 12 AB3 GLU A 245 ALA A 249 5 5 HELIX 13 AB4 ARG A 258 ALA A 265 5 8 HELIX 14 AB5 HIS A 274 ALA A 281 1 8 HELIX 15 AB6 LYS A 284 GLY A 297 1 14 HELIX 16 AB7 ALA A 300 MET A 304 5 5 HELIX 17 AB8 ASP A 351 ASN A 362 1 12 HELIX 18 AB9 GLN A 382 ASP A 387 5 6 HELIX 19 AC1 SER A 396 ASP A 400 5 5 HELIX 20 AC2 ASP A 403 GLY A 419 1 17 HELIX 21 AC3 PRO A 458 LEU A 462 5 5 HELIX 22 AC4 SER A 477 LYS A 481 5 5 HELIX 23 AC5 MET A 482 TYR A 486 1 5 HELIX 24 AC6 THR A 506 SER A 511 1 6 HELIX 25 AC7 TRP A 512 TYR A 517 1 6 HELIX 26 AC8 SER A 528 GLY A 536 1 9 HELIX 27 AC9 HIS A 547 GLU A 565 1 19 HELIX 28 AD1 ASN A 601 ALA A 603 5 3 HELIX 29 AD2 ASP A 644 GLY A 653 1 10 HELIX 30 AD3 GLY A 653 ALA A 665 1 13 HELIX 31 AD4 SER A 674 GLN A 698 1 25 HELIX 32 AD5 SER A 713 ARG A 736 1 24 HELIX 33 AD6 GLN A 739 LYS A 756 1 18 HELIX 34 AD7 SER A 761 LEU A 779 1 19 HELIX 35 AD8 VAL A 783 ASN A 795 1 13 HELIX 36 AD9 LYS A 798 GLY A 803 1 6 HELIX 37 AE1 ASP A 808 VAL A 813 5 6 SHEET 1 AA1 4 ASN A 72 MET A 74 0 SHEET 2 AA1 4 LYS A 34 SER A 39 1 N TYR A 35 O MET A 74 SHEET 3 AA1 4 GLN A 540 GLY A 543 1 O GLN A 540 N LEU A 38 SHEET 4 AA1 4 LEU A 577 THR A 579 1 O LEU A 578 N TYR A 541 SHEET 1 AA2 2 GLY A 78 TRP A 79 0 SHEET 2 AA2 2 VAL A 125 ALA A 126 1 O VAL A 125 N TRP A 79 SHEET 1 AA3 4 THR A 164 LEU A 166 0 SHEET 2 AA3 4 VAL A 149 ASP A 159 -1 N ASN A 157 O LEU A 166 SHEET 3 AA3 4 GLU A 184 PHE A 193 -1 O MET A 190 N LYS A 152 SHEET 4 AA3 4 TRP A 432 GLY A 433 -1 O TRP A 432 N PHE A 193 SHEET 1 AA4 2 VAL A 171 ILE A 172 0 SHEET 2 AA4 2 ARG A 175 GLY A 176 -1 O ARG A 175 N ILE A 172 SHEET 1 AA5 6 PHE A 251 THR A 256 0 SHEET 2 AA5 6 LYS A 226 VAL A 236 -1 N PHE A 234 O LEU A 252 SHEET 3 AA5 6 GLY A 311 VAL A 319 -1 O VAL A 319 N ALA A 235 SHEET 4 AA5 6 LYS A 326 ALA A 332 -1 O LEU A 327 N VAL A 318 SHEET 5 AA5 6 TYR A 267 VAL A 270 1 N VAL A 270 O TRP A 330 SHEET 6 AA5 6 ALA A 343 ALA A 346 -1 O VAL A 344 N ALA A 269 SHEET 1 AA6 3 PHE A 251 THR A 256 0 SHEET 2 AA6 3 LYS A 226 VAL A 236 -1 N PHE A 234 O LEU A 252 SHEET 3 AA6 3 GLY A 421 TYR A 427 -1 O GLN A 426 N SER A 227 SHEET 1 AA7 2 ILE A 369 ALA A 370 0 SHEET 2 AA7 2 VAL A 392 LEU A 393 -1 O VAL A 392 N ALA A 370 SHEET 1 AA8 2 SER A 435 ARG A 436 0 SHEET 2 AA8 2 THR A 503 MET A 504 -1 O THR A 503 N ARG A 436 SHEET 1 AA9 4 GLY A 453 PRO A 456 0 SHEET 2 AA9 4 ILE A 446 CYS A 449 -1 N CYS A 449 O GLY A 453 SHEET 3 AA9 4 ALA A 496 ARG A 499 -1 O LYS A 498 N HIS A 448 SHEET 4 AA9 4 GLU A 487 SER A 489 -1 N THR A 488 O ALA A 497 SHEET 1 AB1 3 LYS A 597 ILE A 600 0 SHEET 2 AB1 3 VAL A 583 GLU A 591 -1 N TYR A 588 O ILE A 600 SHEET 3 AB1 3 VAL A 628 LYS A 634 -1 O SER A 630 N THR A 587 SHEET 1 AB2 3 LYS A 597 ILE A 600 0 SHEET 2 AB2 3 VAL A 583 GLU A 591 -1 N TYR A 588 O ILE A 600 SHEET 3 AB2 3 LEU A 671 GLU A 672 1 O LEU A 671 N VAL A 584 SHEET 1 AB3 2 VAL A 605 GLU A 606 0 SHEET 2 AB3 2 VAL A 619 LEU A 620 -1 O VAL A 619 N GLU A 606 LINK SG CYS A 449 ZN ZN A 901 1555 1555 2.44 LINK SG CYS A 452 ZN ZN A 901 1555 1555 2.39 LINK SG CYS A 490 ZN ZN A 901 1555 1555 2.41 LINK SG CYS A 493 ZN ZN A 901 1555 1555 2.37 CISPEP 1 LEU A 462 PRO A 463 0 2.39 CRYST1 49.049 81.876 226.159 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020388 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004422 0.00000