HEADER LIGASE 11-MAR-21 7NU6 TITLE CRYSTAL STRUCTURE OF NEISSERIA GONORRHOEAE LEURS IN COMPLEX WITH ATP TITLE 2 IN CONFORMATION 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LEUCYL-TRNA SYNTHETASE; COMPND 5 SYNONYM: LEUCYL-TRNA SYNTHETASE,LEURS; COMPND 6 EC: 6.1.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 STRAIN: NCCP11945; SOURCE 5 GENE: LEUS, NGK_0009; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETRUK KEYWDS PROTEIN-LIGAND COMPLEX, ROSSMANN FOLD, TRNA SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR L.PANG,S.V.STRELKOV,S.D.WEEKS REVDAT 3 31-JAN-24 7NU6 1 REMARK REVDAT 2 14-SEP-22 7NU6 1 JRNL REVDAT 1 31-AUG-22 7NU6 0 JRNL AUTH L.PANG,V.ZANKI,S.V.STRELKOV,A.VAN AERSCHOT,I.GRUIC-SOVULJ, JRNL AUTH 2 S.D.WEEKS JRNL TITL PARTITIONING OF THE INITIAL CATALYTIC STEPS OF LEUCYL-TRNA JRNL TITL 2 SYNTHETASE IS DRIVEN BY AN ACTIVE SITE PEPTIDE-PLANE FLIP. JRNL REF COMMUN BIOL V. 5 883 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 36038645 JRNL DOI 10.1038/S42003-022-03825-8 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 48065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.520 REMARK 3 FREE R VALUE TEST SET COUNT : 2171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.0500 - 5.5400 0.99 3091 144 0.1811 0.2136 REMARK 3 2 5.5400 - 4.4000 0.99 2920 139 0.1586 0.1969 REMARK 3 3 4.4000 - 3.8400 1.00 2911 145 0.1565 0.2067 REMARK 3 4 3.8400 - 3.4900 1.00 2888 129 0.1811 0.2400 REMARK 3 5 3.4900 - 3.2400 0.99 2841 144 0.2012 0.2571 REMARK 3 6 3.2400 - 3.0500 1.00 2885 116 0.2155 0.2567 REMARK 3 7 3.0500 - 2.9000 1.00 2859 147 0.2260 0.2649 REMARK 3 8 2.9000 - 2.7700 1.00 2876 136 0.2188 0.3013 REMARK 3 9 2.7700 - 2.6700 1.00 2792 150 0.2172 0.2666 REMARK 3 10 2.6700 - 2.5700 0.99 2791 152 0.2214 0.2528 REMARK 3 11 2.5700 - 2.4900 1.00 2879 132 0.2207 0.3044 REMARK 3 12 2.4900 - 2.4200 1.00 2814 126 0.2202 0.2979 REMARK 3 13 2.4200 - 2.3600 1.00 2832 135 0.2202 0.2927 REMARK 3 14 2.3600 - 2.3000 1.00 2846 117 0.2290 0.3032 REMARK 3 15 2.3000 - 2.2500 1.00 2839 114 0.2404 0.3091 REMARK 3 16 2.2500 - 2.2000 1.00 2830 145 0.2585 0.3188 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8301 1.3252 -30.2466 REMARK 3 T TENSOR REMARK 3 T11: 0.2948 T22: 0.3453 REMARK 3 T33: 0.3415 T12: 0.0030 REMARK 3 T13: -0.0757 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.9434 L22: 1.1586 REMARK 3 L33: 1.5119 L12: 0.7660 REMARK 3 L13: 0.7538 L23: 0.7662 REMARK 3 S TENSOR REMARK 3 S11: 0.2197 S12: -0.0223 S13: -0.1881 REMARK 3 S21: 0.1586 S22: -0.0731 S23: -0.0184 REMARK 3 S31: 0.2215 S32: 0.0457 S33: -0.1386 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8908 33.2985 -11.7955 REMARK 3 T TENSOR REMARK 3 T11: 0.5190 T22: 0.3892 REMARK 3 T33: 0.3634 T12: 0.0250 REMARK 3 T13: -0.1111 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 6.1995 L22: 3.2119 REMARK 3 L33: 8.0689 L12: -0.4576 REMARK 3 L13: 1.9117 L23: -2.0444 REMARK 3 S TENSOR REMARK 3 S11: -0.1272 S12: -0.5342 S13: -0.2851 REMARK 3 S21: 0.0796 S22: -0.0571 S23: -0.1450 REMARK 3 S31: -0.2604 S32: -0.6467 S33: 0.1874 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 362 THROUGH 604 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9575 11.7491 -28.6734 REMARK 3 T TENSOR REMARK 3 T11: 0.3046 T22: 0.3961 REMARK 3 T33: 0.3376 T12: -0.0182 REMARK 3 T13: -0.0530 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.1913 L22: 0.7234 REMARK 3 L33: 0.9029 L12: -0.6308 REMARK 3 L13: 0.2466 L23: 0.2168 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: -0.0229 S13: -0.0330 REMARK 3 S21: -0.0356 S22: 0.0539 S23: -0.0584 REMARK 3 S31: -0.0383 S32: -0.0083 S33: -0.0893 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 605 THROUGH 875 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2904 -16.3166 -51.6831 REMARK 3 T TENSOR REMARK 3 T11: 0.3764 T22: 0.3730 REMARK 3 T33: 0.4383 T12: -0.0323 REMARK 3 T13: -0.0925 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 1.9789 L22: 1.2212 REMARK 3 L33: 1.9191 L12: -0.4829 REMARK 3 L13: 0.9776 L23: 0.1683 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: -0.0654 S13: 0.1147 REMARK 3 S21: 0.0808 S22: 0.0125 S23: 0.1336 REMARK 3 S31: -0.0304 S32: -0.2704 S33: -0.1186 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NU6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292110427. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50185 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 114.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 1.01400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Q89 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HOLO PROTEIN AT 10 MG/ML IN 10 MM TRIS REMARK 280 PH 7, 100 MM NACL, 2.5 MM 2-MERCAPTOETHANOL WAS MIXED WITH 0.1 M REMARK 280 BIS-TRIS PROPANE PH 8.5, 0.1 M MGCL2, 20% (W/V) PEG 3350 AND A REMARK 280 CRYSTAL SEED STOCK IN A 0.75:1.0:0.25 (V/V) RATIO. THE SEED REMARK 280 STOCK WAS PREPARED IN THE SAME CRYSTALLIZATION BUFFER. SUITABLE REMARK 280 CRYSTALS WERE SOAKED WITH 10 MM ATP IN AN EQUILVALENT REMARK 280 PRECIPITANT SOLUTION SUPPLEMENTED WITH 22% (V/V) ETHYLENE REMARK 280 GLYCOL., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.48900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.10550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.39850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 114.10550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.48900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.39850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ARG A 590 REMARK 465 GLU A 591 REMARK 465 ASN A 592 REMARK 465 ASP A 593 REMARK 465 LYS A 594 REMARK 465 GLY A 595 REMARK 465 GLY A 596 REMARK 465 LYS A 597 REMARK 465 THR A 608 REMARK 465 PHE A 609 REMARK 465 ASP A 610 REMARK 465 ASP A 611 REMARK 465 LYS A 612 REMARK 465 GLY A 613 REMARK 465 ARG A 614 REMARK 465 PRO A 615 REMARK 465 VAL A 616 REMARK 465 SER A 617 REMARK 465 ALA A 618 REMARK 465 VAL A 619 REMARK 465 LEU A 620 REMARK 465 LYS A 621 REMARK 465 ALA A 622 REMARK 465 ASP A 623 REMARK 465 GLY A 624 REMARK 465 LEU A 625 REMARK 465 PRO A 626 REMARK 465 VAL A 876 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CD OE1 NE2 REMARK 470 LYS A 47 CE NZ REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 129 CE NZ REMARK 470 LYS A 142 CE NZ REMARK 470 GLU A 145 CD OE1 OE2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 GLN A 170 CD OE1 NE2 REMARK 470 ILE A 172 CG1 CG2 CD1 REMARK 470 ASP A 173 CG OD1 OD2 REMARK 470 ARG A 175 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 177 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 177 CZ3 CH2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 185 CD CE NZ REMARK 470 GLU A 187 OE1 OE2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 LYS A 250 CE NZ REMARK 470 ASP A 283 CG OD1 OD2 REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 LEU A 287 CD1 CD2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 SER A 298 OG REMARK 470 VAL A 299 CG1 CG2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 ASP A 303 OD1 OD2 REMARK 470 THR A 306 OG1 CG2 REMARK 470 LYS A 310 CE NZ REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 LYS A 366 CD CE NZ REMARK 470 VAL A 371 CG1 CG2 REMARK 470 ASP A 373 CG OD1 OD2 REMARK 470 ASN A 379 CG OD1 ND2 REMARK 470 ARG A 380 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 383 CG CD OE1 OE2 REMARK 470 GLU A 389 CG CD OE1 OE2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 MET A 475 CG SD CE REMARK 470 LYS A 498 CD CE NZ REMARK 470 LYS A 521 CD CE NZ REMARK 470 GLU A 530 CG CD OE1 OE2 REMARK 470 LYS A 533 CD CE NZ REMARK 470 GLU A 546 CD OE1 OE2 REMARK 470 GLU A 575 CG CD OE1 OE2 REMARK 470 ASP A 598 CG OD1 OD2 REMARK 470 ILE A 600 CG1 CG2 CD1 REMARK 470 GLU A 606 CG CD OE1 OE2 REMARK 470 LEU A 607 CG CD1 CD2 REMARK 470 VAL A 627 CG1 CG2 REMARK 470 VAL A 628 CG1 CG2 REMARK 470 ILE A 629 CG1 CG2 CD1 REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 LYS A 639 CG CD CE NZ REMARK 470 LYS A 703 CE NZ REMARK 470 LYS A 714 CD CE NZ REMARK 470 LYS A 756 CD CE NZ REMARK 470 GLU A 762 CD OE1 OE2 REMARK 470 VAL A 813 CG1 CG2 REMARK 470 GLU A 818 CG CD OE1 OE2 REMARK 470 VAL A 823 CG1 CG2 REMARK 470 LYS A 826 CG CD CE NZ REMARK 470 LYS A 830 CG CD CE NZ REMARK 470 ASP A 836 CG OD1 OD2 REMARK 470 LYS A 839 CG CD CE NZ REMARK 470 GLU A 850 CG CD OE1 OE2 REMARK 470 VAL A 853 CG1 CG2 REMARK 470 LYS A 854 CG CD CE NZ REMARK 470 LYS A 859 CG CD CE NZ REMARK 470 LYS A 862 CG CD CE NZ REMARK 470 LYS A 863 CG CD CE NZ REMARK 470 ILE A 874 CG1 CG2 CD1 REMARK 470 VAL A 875 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 31 4.33 -69.60 REMARK 500 PRO A 44 74.85 -66.75 REMARK 500 SER A 179 -37.91 -137.27 REMARK 500 ALA A 296 57.77 -99.65 REMARK 500 HIS A 350 15.85 -140.15 REMARK 500 MET A 475 60.44 -102.71 REMARK 500 SER A 519 71.43 -153.17 REMARK 500 ILE A 549 -85.68 -113.54 REMARK 500 ILE A 629 79.06 -116.58 REMARK 500 SER A 630 -151.13 -71.98 REMARK 500 PRO A 666 150.79 -49.31 REMARK 500 ARG A 870 -59.73 -124.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1282 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1283 DISTANCE = 7.19 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 449 SG REMARK 620 2 CYS A 452 SG 108.0 REMARK 620 3 CYS A 490 SG 110.0 107.7 REMARK 620 4 CYS A 493 SG 108.2 111.7 111.1 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7NTY RELATED DB: PDB REMARK 900 RELATED ID: 7NU0 RELATED DB: PDB REMARK 900 RELATED ID: 7NU2 RELATED DB: PDB REMARK 900 RELATED ID: 7NU3 RELATED DB: PDB REMARK 900 RELATED ID: 7NU4 RELATED DB: PDB REMARK 900 RELATED ID: 7NU5 RELATED DB: PDB DBREF 7NU6 A 1 876 UNP B4RNT1 SYL_NEIG2 1 876 SEQADV 7NU6 GLY A 0 UNP B4RNT1 EXPRESSION TAG SEQADV 7NU6 ASN A 454 UNP B4RNT1 ASP 454 CONFLICT SEQADV 7NU6 ILE A 508 UNP B4RNT1 MET 508 CONFLICT SEQRES 1 A 877 GLY MET GLN GLU HIS TYR GLN PRO ALA ALA ILE GLU PRO SEQRES 2 A 877 ALA ALA GLN LYS LYS TRP ASP ASP ALA ARG ILE SER ASN SEQRES 3 A 877 VAL SER GLU ASP ALA SER LYS PRO LYS TYR TYR CYS LEU SEQRES 4 A 877 SER MET PHE PRO TYR PRO SER GLY LYS LEU HIS MET GLY SEQRES 5 A 877 HIS VAL ARG ASN TYR THR ILE GLY ASP VAL LEU SER ARG SEQRES 6 A 877 PHE LYS LEU LEU ASN GLY PHE ASN VAL MET GLN PRO MET SEQRES 7 A 877 GLY TRP ASP ALA PHE GLY MET PRO ALA GLU ASN ALA ALA SEQRES 8 A 877 MET LYS ASN ASN VAL ALA PRO ALA ALA TRP THR TYR ASP SEQRES 9 A 877 ASN ILE GLU TYR MET LYS THR GLN LEU LYS SER LEU GLY SEQRES 10 A 877 PHE ALA VAL ASP TRP GLU ARG GLU VAL ALA THR CYS LYS SEQRES 11 A 877 PRO GLU TYR TYR ARG TRP GLU GLN TRP LEU PHE THR LYS SEQRES 12 A 877 LEU PHE GLU LYS GLY ILE VAL TYR ARG LYS ASN GLY THR SEQRES 13 A 877 VAL ASN TRP ASP PRO VAL ASP GLN THR VAL LEU ALA ASN SEQRES 14 A 877 GLU GLN VAL ILE ASP GLY ARG GLY TRP ARG SER GLY ALA SEQRES 15 A 877 LEU ILE GLU LYS ARG GLU ILE PRO MET TYR TYR PHE LYS SEQRES 16 A 877 ILE THR ASP TYR ALA GLU GLU LEU LEU ASN ASP LEU ASP SEQRES 17 A 877 LYS LEU GLU HIS TRP PRO GLU GLN VAL LYS THR MET GLN SEQRES 18 A 877 ARG ASN TRP ILE GLY LYS SER ARG GLY MET THR VAL ARG SEQRES 19 A 877 PHE ALA VAL SER ASP ASP SER LYS GLN GLY LEU GLU GLY SEQRES 20 A 877 ASP TYR ALA LYS PHE LEU GLN VAL TYR THR THR ARG PRO SEQRES 21 A 877 ASP THR LEU MET GLY ALA THR TYR VAL ALA VAL ALA ALA SEQRES 22 A 877 GLU HIS PRO LEU ALA THR ALA ALA ALA ALA ASP LYS PRO SEQRES 23 A 877 GLU LEU GLN ALA PHE ILE ALA GLU CYS LYS ALA GLY SER SEQRES 24 A 877 VAL ALA GLU ALA ASP MET ALA THR MET GLU LYS LYS GLY SEQRES 25 A 877 VAL PRO THR GLY ARG TYR VAL VAL ASN PRO LEU ASN GLY SEQRES 26 A 877 ASP LYS LEU GLU VAL TRP ILE ALA ASN TYR VAL LEU TRP SEQRES 27 A 877 GLY TYR GLY ASP GLY ALA VAL MET ALA VAL PRO ALA HIS SEQRES 28 A 877 ASP GLU ARG ASP PHE GLU PHE ALA ALA LYS TYR ASN LEU SEQRES 29 A 877 PRO LYS LYS GLN VAL ILE ALA VAL GLY ASP ASN ALA PHE SEQRES 30 A 877 ASP ALA ASN ARG TRP GLN GLU TRP TYR GLY ASP LYS GLU SEQRES 31 A 877 ASN GLY VAL LEU VAL ASN SER GLY ASP LEU ASP GLY LEU SEQRES 32 A 877 ASP PHE GLN THR ALA PHE ASP ALA VAL ALA ALA LYS LEU SEQRES 33 A 877 GLN SER GLN GLY ALA GLY GLU PRO LYS THR GLN TYR ARG SEQRES 34 A 877 LEU ARG ASP TRP GLY ILE SER ARG GLN ARG TYR TRP GLY SEQRES 35 A 877 CYS PRO ILE PRO ILE VAL HIS CYS GLU LYS CYS GLY ASN SEQRES 36 A 877 VAL PRO VAL PRO ALA ASP GLN LEU PRO VAL VAL LEU PRO SEQRES 37 A 877 GLU ASN VAL VAL PRO ASP GLY MET GLY SER PRO LEU ALA SEQRES 38 A 877 LYS MET PRO GLU PHE TYR GLU THR SER CYS PRO CYS CYS SEQRES 39 A 877 GLY GLY ALA ALA LYS ARG GLU THR ASP THR MET ASP THR SEQRES 40 A 877 PHE ILE GLU SER SER TRP TYR PHE PHE ARG TYR MET SER SEQRES 41 A 877 PRO LYS PHE SER ASP GLY MET VAL SER ALA GLU SER ALA SEQRES 42 A 877 LYS TYR TRP GLY ALA VAL ASP GLN TYR ILE GLY GLY ILE SEQRES 43 A 877 GLU HIS ALA ILE LEU HIS LEU LEU TYR ALA ARG PHE PHE SEQRES 44 A 877 THR LYS LEU MET ARG ASP GLU GLY LEU VAL ASN VAL ASP SEQRES 45 A 877 GLU PRO PHE GLU ARG LEU LEU THR GLN GLY MET VAL VAL SEQRES 46 A 877 CYS GLU THR TYR TYR ARG GLU ASN ASP LYS GLY GLY LYS SEQRES 47 A 877 ASP TRP ILE ASN PRO ALA ASP VAL GLU LEU THR PHE ASP SEQRES 48 A 877 ASP LYS GLY ARG PRO VAL SER ALA VAL LEU LYS ALA ASP SEQRES 49 A 877 GLY LEU PRO VAL VAL ILE SER GLY THR GLU LYS MET SER SEQRES 50 A 877 LYS SER LYS ASN ASN GLY VAL ASP PRO GLN GLU LEU ILE SEQRES 51 A 877 ASN ALA TYR GLY ALA ASP THR ALA ARG LEU PHE MET MET SEQRES 52 A 877 PHE ALA ALA PRO PRO GLU GLN SER LEU GLU TRP SER ASP SEQRES 53 A 877 SER GLY VAL GLU GLY ALA HIS ARG PHE LEU ARG ARG LEU SEQRES 54 A 877 TRP ARG THR VAL TYR GLU TYR LEU LYS GLN GLY GLY ALA SEQRES 55 A 877 VAL LYS ALA PHE ALA GLY ASN GLN ASP GLY LEU SER LYS SEQRES 56 A 877 GLU LEU LYS ASP LEU ARG HIS LYS LEU HIS SER THR THR SEQRES 57 A 877 ALA LYS VAL SER ASP ASP TYR GLY ARG ARG GLN GLN PHE SEQRES 58 A 877 ASN THR ALA ILE ALA ALA VAL MET GLU LEU LEU ASN GLN SEQRES 59 A 877 TYR ASP LYS THR ASP THR GLY SER GLU GLN GLY ARG ALA SEQRES 60 A 877 VAL ALA GLN GLU VAL LEU GLU ALA ALA VAL ARG LEU LEU SEQRES 61 A 877 TRP PRO ILE VAL PRO HIS ILE CYS GLU THR LEU TRP SER SEQRES 62 A 877 GLU LEU ASN GLY ALA LYS LEU TRP GLU ALA GLY TRP PRO SEQRES 63 A 877 THR VAL ASP GLU ALA ALA LEU VAL LYS SER GLU ILE GLU SEQRES 64 A 877 VAL MET VAL GLN VAL ASN GLY LYS LEU ARG GLY LYS ILE SEQRES 65 A 877 THR VAL ALA ALA ASP ALA SER LYS ALA ASP LEU GLU ALA SEQRES 66 A 877 ALA ALA LEU ALA ASN GLU GLY ALA VAL LYS PHE MET GLU SEQRES 67 A 877 GLY LYS PRO ALA LYS LYS ILE ILE VAL VAL PRO GLY ARG SEQRES 68 A 877 LEU VAL ASN ILE VAL VAL HET EDO A1001 4 HET ATP A1002 31 HET ATP A1003 31 HET ZN A1004 1 HET MG A1005 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 5 ZN ZN 2+ FORMUL 6 MG MG 2+ FORMUL 7 HOH *183(H2 O) HELIX 1 AA1 GLN A 6 ARG A 22 1 17 HELIX 2 AA2 HIS A 49 ASN A 69 1 21 HELIX 3 AA3 GLY A 83 ASN A 94 1 12 HELIX 4 AA4 ALA A 96 LEU A 115 1 20 HELIX 5 AA5 ASP A 120 GLU A 124 5 5 HELIX 6 AA6 LYS A 129 LYS A 146 1 18 HELIX 7 AA7 ALA A 167 GLU A 169 5 3 HELIX 8 AA8 ILE A 195 ASP A 197 5 3 HELIX 9 AA9 TYR A 198 ASP A 205 1 8 HELIX 10 AB1 LEU A 206 LEU A 209 5 4 HELIX 11 AB2 PRO A 213 GLY A 225 1 13 HELIX 12 AB3 ASP A 238 LYS A 241 5 4 HELIX 13 AB4 GLU A 245 ALA A 249 5 5 HELIX 14 AB5 ARG A 258 ALA A 265 5 8 HELIX 15 AB6 HIS A 274 ALA A 281 1 8 HELIX 16 AB7 LYS A 284 ALA A 296 1 13 HELIX 17 AB8 ALA A 300 ALA A 305 1 6 HELIX 18 AB9 ASP A 351 TYR A 361 1 11 HELIX 19 AC1 GLN A 382 ASP A 387 5 6 HELIX 20 AC2 SER A 396 ASP A 400 5 5 HELIX 21 AC3 ASP A 403 GLN A 418 1 16 HELIX 22 AC4 PRO A 458 LEU A 462 5 5 HELIX 23 AC5 PRO A 478 LYS A 481 5 4 HELIX 24 AC6 MET A 482 TYR A 486 1 5 HELIX 25 AC7 THR A 506 SER A 511 5 6 HELIX 26 AC8 TRP A 512 TYR A 517 1 6 HELIX 27 AC9 SER A 528 GLY A 536 1 9 HELIX 28 AD1 GLY A 544 ALA A 548 5 5 HELIX 29 AD2 ILE A 549 GLU A 565 1 17 HELIX 30 AD3 ASN A 601 VAL A 605 5 5 HELIX 31 AD4 ASP A 644 GLY A 653 1 10 HELIX 32 AD5 GLY A 653 ALA A 665 1 13 HELIX 33 AD6 SER A 674 GLN A 698 1 25 HELIX 34 AD7 SER A 713 ARG A 736 1 24 HELIX 35 AD8 GLN A 739 LYS A 756 1 18 HELIX 36 AD9 SER A 761 TRP A 780 1 20 HELIX 37 AE1 VAL A 783 ASN A 795 1 13 HELIX 38 AE2 LYS A 798 GLY A 803 1 6 HELIX 39 AE3 ASP A 808 VAL A 813 5 6 HELIX 40 AE4 SER A 838 ASN A 849 1 12 HELIX 41 AE5 ASN A 849 LYS A 854 1 6 SHEET 1 AA1 4 ASN A 72 MET A 74 0 SHEET 2 AA1 4 LYS A 34 SER A 39 1 N TYR A 35 O MET A 74 SHEET 3 AA1 4 GLN A 540 ILE A 542 1 O GLN A 540 N LEU A 38 SHEET 4 AA1 4 LEU A 577 LEU A 578 1 O LEU A 578 N TYR A 541 SHEET 1 AA2 2 GLY A 78 TRP A 79 0 SHEET 2 AA2 2 VAL A 125 ALA A 126 1 O VAL A 125 N TRP A 79 SHEET 1 AA3 4 THR A 164 LEU A 166 0 SHEET 2 AA3 4 VAL A 149 ASP A 159 -1 N ASN A 157 O LEU A 166 SHEET 3 AA3 4 GLU A 184 PHE A 193 -1 O GLU A 184 N TRP A 158 SHEET 4 AA3 4 TRP A 432 GLY A 433 -1 O TRP A 432 N PHE A 193 SHEET 1 AA4 2 VAL A 171 ILE A 172 0 SHEET 2 AA4 2 ARG A 175 GLY A 176 -1 O ARG A 175 N ILE A 172 SHEET 1 AA5 6 PHE A 251 THR A 256 0 SHEET 2 AA5 6 LYS A 226 VAL A 236 -1 N PHE A 234 O LEU A 252 SHEET 3 AA5 6 GLY A 311 VAL A 319 -1 O VAL A 319 N ALA A 235 SHEET 4 AA5 6 LYS A 326 ALA A 332 -1 O LEU A 327 N VAL A 318 SHEET 5 AA5 6 TYR A 267 VAL A 270 1 N VAL A 270 O TRP A 330 SHEET 6 AA5 6 ALA A 343 ALA A 346 -1 O VAL A 344 N ALA A 269 SHEET 1 AA6 3 PHE A 251 THR A 256 0 SHEET 2 AA6 3 LYS A 226 VAL A 236 -1 N PHE A 234 O LEU A 252 SHEET 3 AA6 3 GLY A 421 TYR A 427 -1 O LYS A 424 N GLY A 229 SHEET 1 AA7 2 ILE A 369 ALA A 370 0 SHEET 2 AA7 2 VAL A 392 LEU A 393 -1 O VAL A 392 N ALA A 370 SHEET 1 AA8 2 SER A 435 ARG A 436 0 SHEET 2 AA8 2 THR A 503 MET A 504 -1 O THR A 503 N ARG A 436 SHEET 1 AA9 4 GLY A 453 PRO A 456 0 SHEET 2 AA9 4 ILE A 446 CYS A 449 -1 N VAL A 447 O VAL A 455 SHEET 3 AA9 4 ALA A 496 ARG A 499 -1 O LYS A 498 N HIS A 448 SHEET 4 AA9 4 GLU A 487 SER A 489 -1 N THR A 488 O ALA A 497 SHEET 1 AB1 3 GLU A 633 LYS A 634 0 SHEET 2 AB1 3 VAL A 583 CYS A 585 -1 N CYS A 585 O GLU A 633 SHEET 3 AB1 3 LEU A 671 GLU A 672 1 O LEU A 671 N VAL A 584 SHEET 1 AB2 4 LYS A 826 VAL A 833 0 SHEET 2 AB2 4 ILE A 817 VAL A 823 -1 N VAL A 821 O GLY A 829 SHEET 3 AB2 4 LEU A 871 ILE A 874 1 O VAL A 872 N GLN A 822 SHEET 4 AB2 4 ILE A 864 VAL A 867 -1 N ILE A 865 O ASN A 873 LINK SG CYS A 449 ZN ZN A1004 1555 1555 2.33 LINK SG CYS A 452 ZN ZN A1004 1555 1555 2.24 LINK SG CYS A 490 ZN ZN A1004 1555 1555 2.39 LINK SG CYS A 493 ZN ZN A1004 1555 1555 2.32 CISPEP 1 LEU A 462 PRO A 463 0 3.39 CRYST1 48.978 82.797 228.211 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020417 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004382 0.00000