HEADER PEPTIDE BINDING PROTEIN 12-MAR-21 7NUI TITLE CRYSTAL STRUCTURE OF HLA-B*08:01 IN COMPLEX WITH ELRSRYWAI VIRAL TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA-B*08:01 HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: GLU-LEU-ARG-SER-ARG-TYR-TRP-ALA-ILE; COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: PEPTIDE FROM INFLUENZA A VIRUS PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 17 ORGANISM_TAXID: 11320 KEYWDS MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I HLA-B, PEPTIDE BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MAVRIDIS,P.GIASTAS,A.MPAKALI REVDAT 2 31-JAN-24 7NUI 1 REMARK REVDAT 1 14-APR-21 7NUI 0 JRNL AUTH G.MAVRIDIS JRNL TITL CRYSTAL STRUCTURE OF HLA-B*08:01 IN COMPLEX WITH ELRSRYWAI JRNL TITL 2 VIRAL PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 30185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5400 - 4.4500 0.99 2711 142 0.1786 0.2299 REMARK 3 2 4.4500 - 3.5300 1.00 2639 148 0.1696 0.2194 REMARK 3 3 3.5300 - 3.0800 1.00 2620 129 0.2107 0.2956 REMARK 3 4 3.0800 - 2.8000 1.00 2648 137 0.2404 0.2918 REMARK 3 5 2.8000 - 2.6000 0.99 2569 135 0.3167 0.3674 REMARK 3 6 2.6000 - 2.4500 0.99 2583 151 0.3121 0.3747 REMARK 3 7 2.4500 - 2.3300 1.00 2612 151 0.3344 0.3941 REMARK 3 8 2.3300 - 2.2200 0.99 2576 121 0.3565 0.3975 REMARK 3 9 2.2200 - 2.1400 1.00 2564 140 0.3566 0.3682 REMARK 3 10 2.1400 - 2.0600 1.00 2606 150 0.3944 0.4427 REMARK 3 11 2.0600 - 2.0000 0.97 2531 122 0.4202 0.4305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.401 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.044 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3245 REMARK 3 ANGLE : 1.100 4405 REMARK 3 CHIRALITY : 0.059 449 REMARK 3 PLANARITY : 0.007 584 REMARK 3 DIHEDRAL : 14.586 447 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3181 19.1236 19.0595 REMARK 3 T TENSOR REMARK 3 T11: 0.7041 T22: 0.3854 REMARK 3 T33: 0.3141 T12: -0.1063 REMARK 3 T13: 0.0064 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 1.7558 L22: 3.1416 REMARK 3 L33: 4.5283 L12: 0.2220 REMARK 3 L13: -0.4865 L23: 0.1531 REMARK 3 S TENSOR REMARK 3 S11: -0.1287 S12: -0.8633 S13: 0.6133 REMARK 3 S21: 0.3214 S22: -0.1035 S23: 0.0103 REMARK 3 S31: -1.0169 S32: 0.1605 S33: 0.0256 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5218 26.8617 24.0169 REMARK 3 T TENSOR REMARK 3 T11: 1.5787 T22: 0.6617 REMARK 3 T33: 0.6048 T12: -0.1979 REMARK 3 T13: -0.1095 T23: -0.1123 REMARK 3 L TENSOR REMARK 3 L11: 4.5087 L22: 5.5044 REMARK 3 L33: 0.0827 L12: -3.9565 REMARK 3 L13: -0.4923 L23: 0.5051 REMARK 3 S TENSOR REMARK 3 S11: -0.5002 S12: -1.3281 S13: 1.0527 REMARK 3 S21: 1.0703 S22: 0.1693 S23: -0.2426 REMARK 3 S31: -1.7648 S32: 0.4101 S33: 0.0482 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9365 25.8293 12.4574 REMARK 3 T TENSOR REMARK 3 T11: 1.2990 T22: 0.2300 REMARK 3 T33: 0.5233 T12: -0.2404 REMARK 3 T13: -0.1962 T23: 0.0572 REMARK 3 L TENSOR REMARK 3 L11: 1.5521 L22: 3.4059 REMARK 3 L33: 2.1885 L12: 0.0947 REMARK 3 L13: -1.2251 L23: -1.8608 REMARK 3 S TENSOR REMARK 3 S11: -0.0905 S12: -0.1503 S13: 0.5986 REMARK 3 S21: 0.9031 S22: -0.1693 S23: -0.2136 REMARK 3 S31: -1.9440 S32: -0.1636 S33: -0.0525 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1047 11.9560 8.7938 REMARK 3 T TENSOR REMARK 3 T11: 0.5942 T22: 0.3760 REMARK 3 T33: 0.3400 T12: -0.1114 REMARK 3 T13: 0.0106 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 1.0230 L22: 2.4045 REMARK 3 L33: 7.1490 L12: -1.0868 REMARK 3 L13: 1.5207 L23: -0.2443 REMARK 3 S TENSOR REMARK 3 S11: -0.1417 S12: 0.2665 S13: 0.0361 REMARK 3 S21: -0.1934 S22: -0.0617 S23: -0.2222 REMARK 3 S31: -0.1289 S32: 1.0017 S33: 0.2196 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6034 10.2735 43.3735 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 1.0205 REMARK 3 T33: 0.7797 T12: -0.0559 REMARK 3 T13: -0.1319 T23: 0.0671 REMARK 3 L TENSOR REMARK 3 L11: 1.6804 L22: 1.5435 REMARK 3 L33: 5.8987 L12: 0.7171 REMARK 3 L13: -0.9500 L23: 0.6162 REMARK 3 S TENSOR REMARK 3 S11: -0.2927 S12: -0.0497 S13: -0.4190 REMARK 3 S21: 0.2115 S22: 0.0513 S23: -0.5279 REMARK 3 S31: -0.7958 S32: 1.2331 S33: 0.5198 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1686 2.8166 43.6674 REMARK 3 T TENSOR REMARK 3 T11: 0.4190 T22: 0.6469 REMARK 3 T33: 0.7479 T12: 0.1519 REMARK 3 T13: -0.0771 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 5.8905 L22: 5.3226 REMARK 3 L33: 4.5981 L12: -1.8700 REMARK 3 L13: 0.9605 L23: -0.2678 REMARK 3 S TENSOR REMARK 3 S11: -0.2237 S12: -0.1813 S13: -1.2881 REMARK 3 S21: 0.3017 S22: -0.0160 S23: -0.1628 REMARK 3 S31: 0.5107 S32: 0.8115 S33: 0.2569 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7598 7.1203 34.4102 REMARK 3 T TENSOR REMARK 3 T11: 0.4713 T22: 0.7355 REMARK 3 T33: 0.4028 T12: 0.1738 REMARK 3 T13: 0.0968 T23: 0.1250 REMARK 3 L TENSOR REMARK 3 L11: 8.8540 L22: 6.9296 REMARK 3 L33: 8.3530 L12: 4.9399 REMARK 3 L13: 5.9522 L23: 3.4284 REMARK 3 S TENSOR REMARK 3 S11: -0.5240 S12: -1.3040 S13: -1.0265 REMARK 3 S21: -0.6138 S22: 0.3869 S23: -0.4799 REMARK 3 S31: -0.1054 S32: -1.0775 S33: -0.1805 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6463 18.7816 52.6063 REMARK 3 T TENSOR REMARK 3 T11: 1.0048 T22: 1.3516 REMARK 3 T33: 0.6824 T12: 0.2359 REMARK 3 T13: -0.3087 T23: -0.1650 REMARK 3 L TENSOR REMARK 3 L11: 3.2686 L22: 6.7187 REMARK 3 L33: 5.3298 L12: 0.4020 REMARK 3 L13: 1.5817 L23: 2.6496 REMARK 3 S TENSOR REMARK 3 S11: -0.3564 S12: -1.9015 S13: 0.3238 REMARK 3 S21: 1.4079 S22: 0.4167 S23: -0.3750 REMARK 3 S31: -1.5355 S32: 0.5999 S33: 0.3755 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6790 15.4006 40.4096 REMARK 3 T TENSOR REMARK 3 T11: 0.7329 T22: 0.9595 REMARK 3 T33: 0.4388 T12: 0.2949 REMARK 3 T13: -0.0993 T23: -0.0847 REMARK 3 L TENSOR REMARK 3 L11: 4.8302 L22: 0.2388 REMARK 3 L33: 7.5106 L12: 0.7898 REMARK 3 L13: 1.9093 L23: -0.2341 REMARK 3 S TENSOR REMARK 3 S11: -0.6171 S12: -0.8762 S13: 0.6677 REMARK 3 S21: 0.3383 S22: 0.5228 S23: 0.1705 REMARK 3 S31: -1.7018 S32: -1.2209 S33: 0.2691 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3222 15.7787 40.5202 REMARK 3 T TENSOR REMARK 3 T11: 0.7950 T22: 1.3944 REMARK 3 T33: 0.4131 T12: 0.3303 REMARK 3 T13: -0.0404 T23: -0.1352 REMARK 3 L TENSOR REMARK 3 L11: 0.0288 L22: 5.9461 REMARK 3 L33: 2.8556 L12: 0.3058 REMARK 3 L13: 0.1813 L23: 4.0877 REMARK 3 S TENSOR REMARK 3 S11: -0.3910 S12: -1.2156 S13: 0.2322 REMARK 3 S21: 0.5719 S22: -0.1294 S23: 0.0838 REMARK 3 S31: -0.2549 S32: -1.9544 S33: 0.3220 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6604 24.2454 40.7142 REMARK 3 T TENSOR REMARK 3 T11: 1.4031 T22: 1.0147 REMARK 3 T33: 0.7207 T12: 0.3841 REMARK 3 T13: -0.2146 T23: -0.1295 REMARK 3 L TENSOR REMARK 3 L11: 5.4065 L22: 6.7106 REMARK 3 L33: 7.1197 L12: -2.9731 REMARK 3 L13: -2.0443 L23: 6.7908 REMARK 3 S TENSOR REMARK 3 S11: -0.2908 S12: 0.6131 S13: 1.2832 REMARK 3 S21: -0.3715 S22: 0.1962 S23: 0.6161 REMARK 3 S31: -2.0406 S32: -2.1091 S33: 0.1255 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0043 16.2466 32.8779 REMARK 3 T TENSOR REMARK 3 T11: 0.8230 T22: 0.7193 REMARK 3 T33: 0.3805 T12: 0.1924 REMARK 3 T13: -0.0803 T23: -0.0827 REMARK 3 L TENSOR REMARK 3 L11: 2.3617 L22: 1.5462 REMARK 3 L33: 1.9232 L12: 1.6119 REMARK 3 L13: 1.3758 L23: 1.4574 REMARK 3 S TENSOR REMARK 3 S11: -0.7213 S12: -1.2821 S13: 0.4341 REMARK 3 S21: 0.2367 S22: 0.6566 S23: -0.1504 REMARK 3 S31: -0.9199 S32: 0.1339 S33: 0.1077 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0446 14.6921 58.0994 REMARK 3 T TENSOR REMARK 3 T11: 1.1131 T22: 2.1895 REMARK 3 T33: 0.7762 T12: 0.6605 REMARK 3 T13: -0.3526 T23: -0.2241 REMARK 3 L TENSOR REMARK 3 L11: 6.6933 L22: 6.9416 REMARK 3 L33: 2.8542 L12: -6.6856 REMARK 3 L13: 0.7644 L23: 0.0832 REMARK 3 S TENSOR REMARK 3 S11: -0.5545 S12: 4.1339 S13: 0.6717 REMARK 3 S21: -1.3309 S22: -0.5505 S23: 1.1451 REMARK 3 S31: -1.3964 S32: -1.1822 S33: 0.2261 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0800 12.6294 43.8744 REMARK 3 T TENSOR REMARK 3 T11: 0.5823 T22: 1.8910 REMARK 3 T33: 0.5953 T12: 0.5448 REMARK 3 T13: 0.0217 T23: 0.1415 REMARK 3 L TENSOR REMARK 3 L11: 4.8526 L22: 3.5873 REMARK 3 L33: 6.1982 L12: -3.3091 REMARK 3 L13: 1.5672 L23: -0.0672 REMARK 3 S TENSOR REMARK 3 S11: -1.1791 S12: -1.3170 S13: 0.0572 REMARK 3 S21: 1.0313 S22: 0.3712 S23: 0.3842 REMARK 3 S31: -0.6260 S32: 0.0306 S33: 0.2720 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.2199 5.8753 34.9168 REMARK 3 T TENSOR REMARK 3 T11: 0.5997 T22: 1.0898 REMARK 3 T33: 0.4676 T12: -0.1702 REMARK 3 T13: 0.0370 T23: 0.1346 REMARK 3 L TENSOR REMARK 3 L11: 2.9702 L22: 4.6074 REMARK 3 L33: 2.2296 L12: -3.6969 REMARK 3 L13: -1.3407 L23: 1.8426 REMARK 3 S TENSOR REMARK 3 S11: -0.2673 S12: -0.9385 S13: -0.7884 REMARK 3 S21: -0.1863 S22: 0.1040 S23: 0.6340 REMARK 3 S31: 0.1288 S32: -2.4481 S33: -0.5080 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3239 8.1511 48.9557 REMARK 3 T TENSOR REMARK 3 T11: 0.4594 T22: 1.9667 REMARK 3 T33: 0.7029 T12: 0.2989 REMARK 3 T13: 0.0514 T23: 0.3226 REMARK 3 L TENSOR REMARK 3 L11: 5.9390 L22: 2.0042 REMARK 3 L33: 0.3483 L12: 0.0968 REMARK 3 L13: -0.4301 L23: 1.8683 REMARK 3 S TENSOR REMARK 3 S11: -0.4151 S12: -1.1024 S13: -0.1559 REMARK 3 S21: 1.1803 S22: 0.4681 S23: -1.0498 REMARK 3 S31: 0.2158 S32: 0.2318 S33: -0.0461 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7234 20.1617 6.0448 REMARK 3 T TENSOR REMARK 3 T11: 0.8356 T22: 0.3356 REMARK 3 T33: 0.4200 T12: -0.0677 REMARK 3 T13: -0.0405 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 5.3680 L22: 7.0800 REMARK 3 L33: 8.8237 L12: -2.1292 REMARK 3 L13: -1.3659 L23: -6.0239 REMARK 3 S TENSOR REMARK 3 S11: -0.1470 S12: 0.3611 S13: -0.2210 REMARK 3 S21: -0.3696 S22: -0.1061 S23: -0.4974 REMARK 3 S31: -1.3668 S32: 0.8342 S33: 0.4498 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NUI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30185 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30316.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 10.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5WMQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM IODIDE, 0.1 M BIS-TRIS REMARK 280 PROPANE, 20 % W/V PEG 3350, PH 6.5, VAPOR DIFFUSION, TEMPERATURE REMARK 280 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.11800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.10300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.11800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.10300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 ASP A 196 CG OD1 OD2 REMARK 470 GLN A 226 CG CD OE1 NE2 REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 260 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 THR B 73 OG1 CG2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 225 N ASP A 227 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS B 31 C - N - CA ANGL. DEV. = -18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 15 109.93 -59.29 REMARK 500 TRP A 60 -45.98 -144.33 REMARK 500 ALA A 182 73.21 62.08 REMARK 500 THR A 225 -137.98 -147.70 REMARK 500 GLN A 226 68.57 -59.96 REMARK 500 TRP B 60 -8.13 79.53 REMARK 500 THR B 73 116.09 -162.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 226 ASP A 227 125.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WMQ RELATED DB: PDB DBREF 7NUI A 1 276 PDB 7NUI 7NUI 1 276 DBREF 7NUI B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 7NUI D 1 9 PDB 7NUI 7NUI 1 9 SEQADV 7NUI MET B 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 276 GLY SER HIS SER MET ARG TYR PHE ASP THR ALA MET SER SEQRES 2 A 276 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE SER VAL GLY SEQRES 3 A 276 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 276 ALA ALA SER PRO ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 276 GLU GLN GLU GLY PRO GLU TYR TRP ASP ARG ASN THR GLN SEQRES 6 A 276 ILE PHE LYS THR ASN THR GLN THR ASP ARG GLU SER LEU SEQRES 7 A 276 ARG ASN LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 276 SER HIS THR LEU GLN SER MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 276 PRO ASP GLY ARG LEU LEU ARG GLY HIS ASN GLN TYR ALA SEQRES 10 A 276 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 276 ARG SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR SEQRES 12 A 276 GLN ARG LYS TRP GLU ALA ALA ARG VAL ALA GLU GLN ASP SEQRES 13 A 276 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 276 ARG TYR LEU GLU ASN GLY LYS ASP THR LEU GLU ARG ALA SEQRES 15 A 276 ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO ILE SER SEQRES 16 A 276 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 276 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 276 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 276 PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 276 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 276 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 276 TRP GLU PRO SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 D 9 GLU LEU ARG SER ARG TYR TRP ALA ILE HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET PEG B 101 7 HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 PEG C4 H10 O3 FORMUL 9 HOH *98(H2 O) HELIX 1 AA1 SER A 42 GLU A 46 5 5 HELIX 2 AA2 ALA A 49 GLN A 54 1 6 HELIX 3 AA3 GLU A 55 TYR A 59 5 5 HELIX 4 AA4 TRP A 60 TYR A 85 1 26 HELIX 5 AA5 ASP A 137 ALA A 150 1 14 HELIX 6 AA6 ARG A 151 GLY A 162 1 12 HELIX 7 AA7 GLY A 162 GLY A 175 1 14 HELIX 8 AA8 GLY A 175 GLU A 180 1 6 HELIX 9 AA9 GLU A 253 GLN A 255 5 3 SHEET 1 AA1 7 THR A 31 ASP A 37 0 SHEET 2 AA1 7 ARG A 21 VAL A 28 -1 N SER A 24 O PHE A 36 SHEET 3 AA1 7 HIS A 3 MET A 12 -1 N PHE A 8 O VAL A 25 SHEET 4 AA1 7 THR A 94 VAL A 103 -1 O LEU A 95 N ALA A 11 SHEET 5 AA1 7 LEU A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 6 AA1 7 LYS A 121 LEU A 126 -1 O LEU A 126 N ASN A 114 SHEET 7 AA1 7 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O LYS A 243 N ALA A 205 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O LYS A 243 N ALA A 205 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 3 GLU B 36 LYS B 41 0 SHEET 2 AA7 3 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 3 AA7 3 LYS B 91 LYS B 94 -1 O VAL B 93 N CYS B 80 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.06 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.02 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.05 CRYST1 90.236 40.206 125.978 90.00 101.53 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011082 0.000000 0.002261 0.00000 SCALE2 0.000000 0.024872 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008101 0.00000