HEADER HYDROLASE 15-MAR-21 7NUZ TITLE PROTEINASE K STRUCTURE AT ATOMIC RESOLUTION FROM CRYSTALS GROWN IN TITLE 2 AGAROSE GEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEINASE K; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDOPEPTIDASE K,TRITIRACHIUM ALKALINE PROTEINASE; COMPND 5 EC: 3.4.21.64 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARENGYODONTIUM ALBUM; SOURCE 3 ORGANISM_COMMON: TRITIRACHIUM ALBUM; SOURCE 4 ORGANISM_TAXID: 37998 KEYWDS PROTEINASE K, SERINE PROTEASES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GAVIRA,F.ARTUSIO,A.CASTELLVI,R.PISANO REVDAT 2 31-JAN-24 7NUZ 1 REMARK REVDAT 1 19-JAN-22 7NUZ 0 JRNL AUTH F.ARTUSIO,A.CASTELLVI,R.PISANO,J.A.GAVIRA JRNL TITL TUNING TRANSPORT PHENOMENA IN AGAROSE GELS FOR THE CONTROL JRNL TITL 2 OF PROTEIN NUCLEATION DENSITY AND CRYSTAL FORM JRNL REF CRYSTALS 2021 JRNL REFN ESSN 2073-4352 JRNL DOI 10.3390/CRYST11050466 REMARK 2 REMARK 2 RESOLUTION. 1.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 103763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 5199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7700 - 3.3900 1.00 3594 192 0.1594 0.1837 REMARK 3 2 3.3900 - 2.6900 1.00 3453 157 0.1719 0.1967 REMARK 3 3 2.6900 - 2.3500 1.00 3362 184 0.1749 0.2120 REMARK 3 4 2.3500 - 2.1300 0.99 3315 192 0.1812 0.2185 REMARK 3 5 2.1300 - 1.9800 1.00 3351 183 0.1664 0.1840 REMARK 3 6 1.9800 - 1.8600 0.99 3304 178 0.1832 0.1878 REMARK 3 7 1.8600 - 1.7700 1.00 3304 195 0.1721 0.1831 REMARK 3 8 1.7700 - 1.6900 1.00 3297 165 0.1648 0.1922 REMARK 3 9 1.6900 - 1.6300 1.00 3292 180 0.1665 0.1800 REMARK 3 10 1.6300 - 1.5700 1.00 3311 179 0.1552 0.1706 REMARK 3 11 1.5700 - 1.5200 1.00 3282 183 0.1547 0.1482 REMARK 3 12 1.5200 - 1.4800 1.00 3311 154 0.1468 0.1609 REMARK 3 13 1.4800 - 1.4400 1.00 3254 172 0.1514 0.1908 REMARK 3 14 1.4400 - 1.4100 0.99 3270 171 0.1564 0.1736 REMARK 3 15 1.4100 - 1.3700 0.99 3246 181 0.1658 0.2046 REMARK 3 16 1.3700 - 1.3400 0.99 3251 182 0.1680 0.1988 REMARK 3 17 1.3400 - 1.3200 0.99 3269 156 0.1764 0.1780 REMARK 3 18 1.3200 - 1.2900 1.00 3266 178 0.1924 0.1866 REMARK 3 19 1.2900 - 1.2700 0.99 3253 160 0.1788 0.1932 REMARK 3 20 1.2700 - 1.2500 1.00 3244 177 0.1749 0.1819 REMARK 3 21 1.2500 - 1.2300 0.99 3249 164 0.1726 0.1828 REMARK 3 22 1.2300 - 1.2100 0.99 3236 177 0.1912 0.1839 REMARK 3 23 1.2100 - 1.1900 0.99 3235 169 0.1673 0.1627 REMARK 3 24 1.1900 - 1.1700 0.99 3236 178 0.1685 0.2060 REMARK 3 25 1.1700 - 1.1600 0.99 3267 154 0.1720 0.1720 REMARK 3 26 1.1600 - 1.1400 0.99 3226 164 0.1763 0.2291 REMARK 3 27 1.1400 - 1.1300 0.99 3239 170 0.1910 0.2045 REMARK 3 28 1.1300 - 1.1200 0.99 3246 154 0.2070 0.2243 REMARK 3 29 1.1200 - 1.1000 0.99 3236 168 0.2056 0.2076 REMARK 3 30 1.1000 - 1.0900 0.99 3165 182 0.2275 0.2262 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9030 21.9512 17.2889 REMARK 3 T TENSOR REMARK 3 T11: 0.1781 T22: 0.0839 REMARK 3 T33: 0.0851 T12: -0.0360 REMARK 3 T13: 0.0353 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.0795 L22: 1.0947 REMARK 3 L33: 1.2881 L12: 0.3475 REMARK 3 L13: 0.4490 L23: -0.1927 REMARK 3 S TENSOR REMARK 3 S11: -0.0899 S12: 0.1604 S13: 0.0508 REMARK 3 S21: -0.3030 S22: 0.0769 S23: -0.1246 REMARK 3 S31: -0.1336 S32: 0.1357 S33: 0.0297 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2024 19.3729 26.4276 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.0723 REMARK 3 T33: 0.0879 T12: 0.0102 REMARK 3 T13: -0.0257 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.5862 L22: 1.7629 REMARK 3 L33: 1.4521 L12: 0.0406 REMARK 3 L13: -0.1266 L23: -0.3998 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: 0.0216 S13: 0.1269 REMARK 3 S21: -0.1036 S22: 0.0131 S23: 0.1524 REMARK 3 S31: -0.0713 S32: -0.1088 S33: 0.0217 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5028 18.4851 31.5345 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.0492 REMARK 3 T33: 0.0694 T12: 0.0177 REMARK 3 T13: -0.0109 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 2.0559 L22: 1.4587 REMARK 3 L33: 1.7098 L12: 0.5180 REMARK 3 L13: -0.7484 L23: -0.2551 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.1143 S13: 0.1116 REMARK 3 S21: 0.0109 S22: -0.0002 S23: 0.1565 REMARK 3 S31: -0.0472 S32: -0.0789 S33: -0.0025 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4229 4.8589 27.9043 REMARK 3 T TENSOR REMARK 3 T11: 0.0561 T22: 0.0392 REMARK 3 T33: 0.0671 T12: -0.0191 REMARK 3 T13: -0.0069 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.4769 L22: 2.7989 REMARK 3 L33: 7.1228 L12: -0.1723 REMARK 3 L13: 0.6983 L23: -0.5496 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: 0.0550 S13: 0.0107 REMARK 3 S21: -0.1766 S22: 0.0694 S23: 0.1462 REMARK 3 S31: 0.0670 S32: -0.1541 S33: -0.0425 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3166 9.1823 30.0781 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.0497 REMARK 3 T33: 0.0523 T12: 0.0028 REMARK 3 T13: 0.0039 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.5494 L22: 1.1890 REMARK 3 L33: 0.3843 L12: 0.4325 REMARK 3 L13: 0.1539 L23: 0.2105 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.0143 S13: -0.0483 REMARK 3 S21: -0.0277 S22: 0.0074 S23: -0.1158 REMARK 3 S31: -0.0007 S32: -0.0021 S33: -0.0035 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2234 6.8304 20.1782 REMARK 3 T TENSOR REMARK 3 T11: 0.1173 T22: 0.0754 REMARK 3 T33: 0.1603 T12: -0.0080 REMARK 3 T13: 0.0591 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.5016 L22: 0.8430 REMARK 3 L33: 1.4593 L12: 0.1962 REMARK 3 L13: 0.4305 L23: 0.2156 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: 0.0735 S13: -0.0796 REMARK 3 S21: -0.1599 S22: 0.0905 S23: -0.3266 REMARK 3 S31: -0.0111 S32: 0.0889 S33: -0.0538 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NUZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103912 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.090 REMARK 200 RESOLUTION RANGE LOW (A) : 47.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2V8B REMARK 200 REMARK 200 REMARK: BIPYRAMIDAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M NANO3, 0.025 M NA CITRATE (PH REMARK 280 6.5), COUNTER-DIFFUSION, TEMPERATURE 293.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.49950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.91450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.91450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.24925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.91450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.91450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.74975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.91450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.91450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.24925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.91450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.91450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.74975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.49950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 506 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 500 O HOH A 827 2.00 REMARK 500 O HOH A 415 O HOH A 497 2.02 REMARK 500 O HOH A 545 O HOH A 654 2.03 REMARK 500 O HOH A 718 O HOH A 726 2.04 REMARK 500 O HOH A 703 O HOH A 732 2.08 REMARK 500 O HOH A 406 O HOH A 811 2.10 REMARK 500 OD1 ASP A 112 O HOH A 401 2.12 REMARK 500 O HOH A 563 O HOH A 610 2.12 REMARK 500 O HOH A 500 O HOH A 727 2.12 REMARK 500 O HOH A 687 O HOH A 704 2.13 REMARK 500 O HOH A 654 O HOH A 781 2.13 REMARK 500 O HOH A 418 O HOH A 500 2.14 REMARK 500 O HOH A 427 O HOH A 785 2.14 REMARK 500 O HOH A 545 O HOH A 781 2.15 REMARK 500 O HOH A 413 O HOH A 452 2.16 REMARK 500 O HOH A 410 O HOH A 790 2.17 REMARK 500 O HOH A 712 O HOH A 787 2.17 REMARK 500 NH2 ARG A 189 O HOH A 402 2.17 REMARK 500 O HOH A 577 O HOH A 821 2.18 REMARK 500 O HOH A 574 O HOH A 623 2.19 REMARK 500 OD2 ASP A 260 O HOH A 403 2.19 REMARK 500 O HOH A 444 O HOH A 792 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 402 O HOH A 644 4555 2.03 REMARK 500 O HOH A 503 O HOH A 703 6455 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 118 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 -149.55 -165.97 REMARK 500 SER A 216 -169.92 -112.05 REMARK 500 ASN A 270 74.88 -110.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 130 OG REMARK 620 2 SER A 132 OG 109.6 REMARK 620 3 HOH A 464 O 123.3 86.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 175 O REMARK 620 2 VAL A 177 O 87.4 REMARK 620 3 ASP A 200 OD1 151.5 115.0 REMARK 620 4 ASP A 200 OD2 157.1 78.5 50.9 REMARK 620 5 HOH A 531 O 91.6 71.3 80.2 100.7 REMARK 620 6 HOH A 555 O 95.1 147.1 75.7 87.4 141.1 REMARK 620 7 HOH A 556 O 80.4 73.4 121.4 78.3 144.1 74.8 REMARK 620 8 HOH A 674 O 74.7 138.0 76.9 127.5 71.6 73.4 137.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7NUY RELATED DB: PDB REMARK 900 SAME PROTEIN DBREF 7NUZ A 1 279 UNP P06873 PRTK_PARAQ 106 384 SEQADV 7NUZ ASP A 207 UNP P06873 SER 312 CONFLICT SEQRES 1 A 279 ALA ALA GLN THR ASN ALA PRO TRP GLY LEU ALA ARG ILE SEQRES 2 A 279 SER SER THR SER PRO GLY THR SER THR TYR TYR TYR ASP SEQRES 3 A 279 GLU SER ALA GLY GLN GLY SER CYS VAL TYR VAL ILE ASP SEQRES 4 A 279 THR GLY ILE GLU ALA SER HIS PRO GLU PHE GLU GLY ARG SEQRES 5 A 279 ALA GLN MET VAL LYS THR TYR TYR TYR SER SER ARG ASP SEQRES 6 A 279 GLY ASN GLY HIS GLY THR HIS CYS ALA GLY THR VAL GLY SEQRES 7 A 279 SER ARG THR TYR GLY VAL ALA LYS LYS THR GLN LEU PHE SEQRES 8 A 279 GLY VAL LYS VAL LEU ASP ASP ASN GLY SER GLY GLN TYR SEQRES 9 A 279 SER THR ILE ILE ALA GLY MET ASP PHE VAL ALA SER ASP SEQRES 10 A 279 LYS ASN ASN ARG ASN CYS PRO LYS GLY VAL VAL ALA SER SEQRES 11 A 279 LEU SER LEU GLY GLY GLY TYR SER SER SER VAL ASN SER SEQRES 12 A 279 ALA ALA ALA ARG LEU GLN SER SER GLY VAL MET VAL ALA SEQRES 13 A 279 VAL ALA ALA GLY ASN ASN ASN ALA ASP ALA ARG ASN TYR SEQRES 14 A 279 SER PRO ALA SER GLU PRO SER VAL CYS THR VAL GLY ALA SEQRES 15 A 279 SER ASP ARG TYR ASP ARG ARG SER SER PHE SER ASN TYR SEQRES 16 A 279 GLY SER VAL LEU ASP ILE PHE GLY PRO GLY THR ASP ILE SEQRES 17 A 279 LEU SER THR TRP ILE GLY GLY SER THR ARG SER ILE SER SEQRES 18 A 279 GLY THR SER MET ALA THR PRO HIS VAL ALA GLY LEU ALA SEQRES 19 A 279 ALA TYR LEU MET THR LEU GLY LYS THR THR ALA ALA SER SEQRES 20 A 279 ALA CYS ARG TYR ILE ALA ASP THR ALA ASN LYS GLY ASP SEQRES 21 A 279 LEU SER ASN ILE PRO PHE GLY THR VAL ASN LEU LEU ALA SEQRES 22 A 279 TYR ASN ASN TYR GLN ALA HET NO3 A 301 4 HET NA A 302 1 HET GOL A 303 6 HET GOL A 304 12 HET SO4 A 305 5 HET MG A 306 1 HET NA A 307 1 HETNAM NO3 NITRATE ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NO3 N O3 1- FORMUL 3 NA 2(NA 1+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 SO4 O4 S 2- FORMUL 7 MG MG 2+ FORMUL 9 HOH *459(H2 O) HELIX 1 AA1 PRO A 7 SER A 14 1 8 HELIX 2 AA2 HIS A 46 GLU A 50 5 5 HELIX 3 AA3 GLY A 68 SER A 79 1 12 HELIX 4 AA4 GLN A 103 LYS A 118 1 16 HELIX 5 AA5 ASN A 119 ARG A 121 5 3 HELIX 6 AA6 SER A 138 SER A 151 1 14 HELIX 7 AA7 ASP A 165 ARG A 167 5 3 HELIX 8 AA8 GLY A 222 LEU A 240 1 19 HELIX 9 AA9 SER A 247 ALA A 256 1 10 SHEET 1 AA1 2 ALA A 2 GLN A 3 0 SHEET 2 AA1 2 TYR A 23 TYR A 24 -1 O TYR A 23 N GLN A 3 SHEET 1 AA2 7 ALA A 53 THR A 58 0 SHEET 2 AA2 7 GLN A 89 LYS A 94 1 O GLY A 92 N VAL A 56 SHEET 3 AA2 7 SER A 33 ASP A 39 1 N VAL A 35 O GLN A 89 SHEET 4 AA2 7 GLY A 126 LEU A 131 1 O SER A 130 N TYR A 36 SHEET 5 AA2 7 VAL A 153 ALA A 158 1 O MET A 154 N ALA A 129 SHEET 6 AA2 7 CYS A 178 SER A 183 1 O CYS A 178 N VAL A 157 SHEET 7 AA2 7 ILE A 201 PRO A 204 1 O ILE A 201 N GLY A 181 SHEET 1 AA3 2 GLY A 135 GLY A 136 0 SHEET 2 AA3 2 TYR A 169 SER A 170 -1 O SER A 170 N GLY A 135 SHEET 1 AA4 2 ILE A 208 TRP A 212 0 SHEET 2 AA4 2 SER A 216 ILE A 220 -1 O ILE A 220 N ILE A 208 SHEET 1 AA5 2 ASN A 257 LYS A 258 0 SHEET 2 AA5 2 LEU A 271 LEU A 272 -1 O LEU A 272 N ASN A 257 SSBOND 1 CYS A 34 CYS A 123 1555 1555 2.04 SSBOND 2 CYS A 178 CYS A 249 1555 1555 2.05 LINK OG SER A 130 NA NA A 302 1555 1555 2.67 LINK OG SER A 132 NA NA A 302 1555 1555 2.77 LINK O PRO A 175 MG MG A 306 1555 1555 2.43 LINK O VAL A 177 MG MG A 306 1555 1555 2.40 LINK OD1 ASP A 200 MG MG A 306 1555 1555 2.65 LINK OD2 ASP A 200 MG MG A 306 1555 1555 2.42 LINK O LEU A 261 NA NA A 307 1555 1555 2.94 LINK NA NA A 302 O HOH A 464 1555 1555 2.78 LINK MG MG A 306 O HOH A 531 1555 1555 2.33 LINK MG MG A 306 O HOH A 555 1555 1555 2.37 LINK MG MG A 306 O HOH A 556 1555 1555 2.38 LINK MG MG A 306 O HOH A 674 1555 1555 2.48 CISPEP 1 SER A 170 PRO A 171 0 0.84 CRYST1 67.829 67.829 106.999 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014743 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009346 0.00000