HEADER PROTEIN BINDING 17-MAR-21 7NX4 TITLE CRYSTAL STRUCTURE OF THE TG AND EGF-LIKE DOMAINS OF ALK COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALK TYROSINE KINASE RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ANAPLASTIC LYMPHOMA KINASE; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALK; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CELL SURFACE RECEPTOR CYTOKINE BINDING, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.DE MUNCK,S.N.SAVVIDES REVDAT 4 23-OCT-24 7NX4 1 REMARK REVDAT 3 31-JAN-24 7NX4 1 REMARK REVDAT 2 15-DEC-21 7NX4 1 JRNL REVDAT 1 27-OCT-21 7NX4 0 JRNL AUTH S.DE MUNCK,M.PROVOST,M.KURIKAWA,I.OMORI,J.MUKOHYAMA,J.FELIX, JRNL AUTH 2 Y.BLOCH,O.ABDEL-WAHAB,J.F.BAZAN,A.YOSHIMI,S.N.SAVVIDES JRNL TITL STRUCTURAL BASIS OF CYTOKINE-MEDIATED ACTIVATION OF ALK JRNL TITL 2 FAMILY RECEPTORS. JRNL REF NATURE V. 600 143 2021 JRNL REFN ESSN 1476-4687 JRNL PMID 34646012 JRNL DOI 10.1038/S41586-021-03959-5 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.0500 - 4.7600 1.00 2522 133 0.1813 0.2052 REMARK 3 2 4.7600 - 3.7800 1.00 2507 132 0.2015 0.2452 REMARK 3 3 3.7800 - 3.3000 1.00 2495 132 0.2878 0.2976 REMARK 3 4 3.3000 - 3.0000 1.00 2497 131 0.3975 0.3973 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.633 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 104.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 103.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2608 REMARK 3 ANGLE : 0.528 3534 REMARK 3 CHIRALITY : 0.045 377 REMARK 3 PLANARITY : 0.003 474 REMARK 3 DIHEDRAL : 10.378 386 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 679:704) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0552 26.8157 -10.1497 REMARK 3 T TENSOR REMARK 3 T11: 0.9838 T22: 1.0454 REMARK 3 T33: 0.8292 T12: -0.0110 REMARK 3 T13: 0.1224 T23: 0.0951 REMARK 3 L TENSOR REMARK 3 L11: 1.1852 L22: 1.2981 REMARK 3 L33: 0.7731 L12: 0.6766 REMARK 3 L13: -0.8270 L23: -0.1383 REMARK 3 S TENSOR REMARK 3 S11: 0.4050 S12: -0.1829 S13: -0.0318 REMARK 3 S21: 0.9248 S22: -0.6678 S23: -0.1789 REMARK 3 S31: -0.2556 S32: 0.4447 S33: 0.0009 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 705:727) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5956 23.7259 -15.7889 REMARK 3 T TENSOR REMARK 3 T11: 0.8998 T22: 0.9899 REMARK 3 T33: 0.6664 T12: -0.0157 REMARK 3 T13: -0.0619 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 2.3799 L22: 3.5516 REMARK 3 L33: 2.7680 L12: -0.3532 REMARK 3 L13: -2.6597 L23: 0.6802 REMARK 3 S TENSOR REMARK 3 S11: 0.1883 S12: 0.6220 S13: -0.4673 REMARK 3 S21: 0.1058 S22: -0.0548 S23: -0.0377 REMARK 3 S31: 0.5470 S32: 0.6599 S33: -0.0007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 728:746) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3668 19.5669 -4.0224 REMARK 3 T TENSOR REMARK 3 T11: 0.9949 T22: 0.9433 REMARK 3 T33: 0.8226 T12: -0.0700 REMARK 3 T13: 0.0829 T23: 0.1377 REMARK 3 L TENSOR REMARK 3 L11: 2.0668 L22: 0.7469 REMARK 3 L33: 2.1215 L12: -0.5771 REMARK 3 L13: 0.2008 L23: -1.2162 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: -0.1700 S13: -0.0216 REMARK 3 S21: -0.1124 S22: 0.4027 S23: 0.3581 REMARK 3 S31: 0.2810 S32: -0.3287 S33: 0.0009 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 747:760) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5437 35.7849 5.5365 REMARK 3 T TENSOR REMARK 3 T11: 1.3065 T22: 1.8089 REMARK 3 T33: 1.4146 T12: -0.1492 REMARK 3 T13: 0.0618 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 0.1363 L22: 0.4590 REMARK 3 L33: 0.2039 L12: 0.2003 REMARK 3 L13: 0.1367 L23: -0.0794 REMARK 3 S TENSOR REMARK 3 S11: 0.1366 S12: -1.4022 S13: -0.2835 REMARK 3 S21: 4.4372 S22: 0.2733 S23: -2.4584 REMARK 3 S31: 0.8029 S32: 0.2169 S33: 0.0014 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 761:796) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4237 34.0666 -6.2584 REMARK 3 T TENSOR REMARK 3 T11: 0.7900 T22: 1.1214 REMARK 3 T33: 0.8649 T12: 0.0170 REMARK 3 T13: 0.0219 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.0450 L22: 1.9299 REMARK 3 L33: 1.9580 L12: 0.0634 REMARK 3 L13: -0.6132 L23: -1.8346 REMARK 3 S TENSOR REMARK 3 S11: 0.1695 S12: -0.1466 S13: 0.2317 REMARK 3 S21: 0.2703 S22: -0.1271 S23: 0.2134 REMARK 3 S31: -0.0564 S32: -0.2354 S33: 0.0004 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 797:808) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9960 60.4721 4.0756 REMARK 3 T TENSOR REMARK 3 T11: 1.3603 T22: 1.2373 REMARK 3 T33: 1.7474 T12: 0.3836 REMARK 3 T13: 0.1431 T23: -0.2388 REMARK 3 L TENSOR REMARK 3 L11: 0.0650 L22: 0.8691 REMARK 3 L33: 0.4673 L12: 0.0865 REMARK 3 L13: -0.1608 L23: 0.0577 REMARK 3 S TENSOR REMARK 3 S11: -0.3531 S12: -0.9935 S13: 1.6848 REMARK 3 S21: 1.1694 S22: 0.6896 S23: -0.0677 REMARK 3 S31: -0.8429 S32: -0.3197 S33: 0.0010 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 809:850) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8734 33.2836 -7.0168 REMARK 3 T TENSOR REMARK 3 T11: 0.7274 T22: 1.0989 REMARK 3 T33: 0.9142 T12: -0.0217 REMARK 3 T13: 0.1473 T23: 0.1068 REMARK 3 L TENSOR REMARK 3 L11: 2.9403 L22: 2.8087 REMARK 3 L33: 0.8499 L12: -1.1702 REMARK 3 L13: -0.0931 L23: -1.4235 REMARK 3 S TENSOR REMARK 3 S11: -0.0223 S12: -0.2272 S13: 0.2729 REMARK 3 S21: 0.4133 S22: 0.5438 S23: 0.1950 REMARK 3 S31: 0.1425 S32: -0.4610 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 851:861) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3004 32.5991 7.4720 REMARK 3 T TENSOR REMARK 3 T11: 1.6760 T22: 1.6231 REMARK 3 T33: 1.5862 T12: 0.0609 REMARK 3 T13: 0.4329 T23: -0.2269 REMARK 3 L TENSOR REMARK 3 L11: 0.0168 L22: 0.1477 REMARK 3 L33: 0.0626 L12: 0.0569 REMARK 3 L13: -0.0402 L23: 0.1072 REMARK 3 S TENSOR REMARK 3 S11: 0.5363 S12: -1.5897 S13: -0.0183 REMARK 3 S21: 1.6733 S22: -1.4750 S23: 0.0335 REMARK 3 S31: 0.8993 S32: -0.6331 S33: -0.0017 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 862:909) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0572 33.4849 -12.2171 REMARK 3 T TENSOR REMARK 3 T11: 0.6586 T22: 1.3307 REMARK 3 T33: 1.1357 T12: -0.0486 REMARK 3 T13: 0.0601 T23: 0.0630 REMARK 3 L TENSOR REMARK 3 L11: 2.1208 L22: 1.6779 REMARK 3 L33: 1.7865 L12: -1.5372 REMARK 3 L13: 1.4751 L23: -0.5775 REMARK 3 S TENSOR REMARK 3 S11: -0.1985 S12: -0.1229 S13: 0.0486 REMARK 3 S21: 0.3824 S22: 0.1588 S23: 0.9473 REMARK 3 S31: 0.0976 S32: -1.1490 S33: -0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 910:913) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0525 56.3637 -9.5894 REMARK 3 T TENSOR REMARK 3 T11: 0.4115 T22: 1.6150 REMARK 3 T33: 0.7873 T12: 0.0506 REMARK 3 T13: -0.0448 T23: 0.0850 REMARK 3 L TENSOR REMARK 3 L11: 1.9948 L22: 8.7608 REMARK 3 L33: 7.8328 L12: 3.8563 REMARK 3 L13: 2.0628 L23: 6.7202 REMARK 3 S TENSOR REMARK 3 S11: -1.9158 S12: 0.3019 S13: 1.6883 REMARK 3 S21: -0.9531 S22: 0.2339 S23: -0.4282 REMARK 3 S31: -0.4645 S32: -0.2876 S33: -0.6184 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 914:960) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9477 37.5673 -3.9686 REMARK 3 T TENSOR REMARK 3 T11: 0.8310 T22: 1.3274 REMARK 3 T33: 1.1098 T12: 0.0437 REMARK 3 T13: 0.2296 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 1.0438 L22: 1.0769 REMARK 3 L33: 0.4270 L12: -0.7726 REMARK 3 L13: 0.1966 L23: -0.5093 REMARK 3 S TENSOR REMARK 3 S11: 0.1356 S12: -0.1920 S13: 0.2152 REMARK 3 S21: 0.7494 S22: -0.0768 S23: 1.1894 REMARK 3 S31: -0.2131 S32: -0.4999 S33: -0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 961:974) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6317 19.2411 3.2200 REMARK 3 T TENSOR REMARK 3 T11: 1.5627 T22: 1.4358 REMARK 3 T33: 1.2736 T12: -0.1809 REMARK 3 T13: 0.1653 T23: 0.1569 REMARK 3 L TENSOR REMARK 3 L11: 0.9146 L22: 0.8657 REMARK 3 L33: 0.2871 L12: -0.5159 REMARK 3 L13: 0.1634 L23: -0.5712 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: -0.6705 S13: -0.1391 REMARK 3 S21: 1.0851 S22: 0.5879 S23: -0.4197 REMARK 3 S31: -0.6680 S32: 0.1218 S33: -0.0017 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 975:987) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4938 16.3778 -0.1931 REMARK 3 T TENSOR REMARK 3 T11: 1.3636 T22: 1.1649 REMARK 3 T33: 0.6668 T12: 0.1445 REMARK 3 T13: 0.1801 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.1716 L22: 0.6578 REMARK 3 L33: 0.2030 L12: 0.8627 REMARK 3 L13: 0.6580 L23: 0.3171 REMARK 3 S TENSOR REMARK 3 S11: 0.4705 S12: -1.0159 S13: 0.4210 REMARK 3 S21: 1.4758 S22: -0.1568 S23: 0.8729 REMARK 3 S31: 0.2967 S32: 1.7154 S33: -0.0192 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 988:995) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7758 10.5671 11.3302 REMARK 3 T TENSOR REMARK 3 T11: 1.4259 T22: 0.9279 REMARK 3 T33: 0.7815 T12: -0.0293 REMARK 3 T13: 0.0070 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 0.4135 L22: 0.0785 REMARK 3 L33: 0.2320 L12: -0.1496 REMARK 3 L13: -0.1323 L23: 0.1615 REMARK 3 S TENSOR REMARK 3 S11: -0.4839 S12: -0.1027 S13: -0.0208 REMARK 3 S21: -0.3005 S22: 0.8212 S23: 0.6286 REMARK 3 S31: 0.5592 S32: -0.7754 S33: -0.0015 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 996:1010) REMARK 3 ORIGIN FOR THE GROUP (A): 47.9827 6.4867 5.4095 REMARK 3 T TENSOR REMARK 3 T11: 1.3018 T22: 1.0666 REMARK 3 T33: 1.0882 T12: -0.2262 REMARK 3 T13: 0.0629 T23: 0.0413 REMARK 3 L TENSOR REMARK 3 L11: 1.7068 L22: 0.4710 REMARK 3 L33: 0.5909 L12: -0.8496 REMARK 3 L13: 0.2712 L23: 0.1027 REMARK 3 S TENSOR REMARK 3 S11: 0.1916 S12: 0.0350 S13: 0.9343 REMARK 3 S21: -0.8904 S22: 0.0007 S23: -1.1912 REMARK 3 S31: -1.9172 S32: -0.1569 S33: -0.0011 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 1011:1025) REMARK 3 ORIGIN FOR THE GROUP (A): 49.9221 12.1603 18.5942 REMARK 3 T TENSOR REMARK 3 T11: 1.0818 T22: 0.8547 REMARK 3 T33: 1.1290 T12: -0.0727 REMARK 3 T13: 0.1263 T23: -0.1983 REMARK 3 L TENSOR REMARK 3 L11: 0.6052 L22: 0.6417 REMARK 3 L33: 0.0221 L12: -0.2787 REMARK 3 L13: 0.0227 L23: 0.2560 REMARK 3 S TENSOR REMARK 3 S11: -1.0761 S12: -2.0399 S13: 0.9561 REMARK 3 S21: -0.3967 S22: 0.1588 S23: -0.3782 REMARK 3 S31: 0.0474 S32: -0.7502 S33: -0.0103 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10550 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 60.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7NX3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TO 0.5MM MANGANESE(II) CHLORIDE REMARK 280 TETRAHYDRATE, 0.5MM COBALT(II) CHLORIDE HEXAHYDRATE, 0.5MM REMARK 280 NICKEL(II) CHLORIDE HEXAHYDRATE, 0.5MM ZINC ACETATE DIHYDRATE, REMARK 280 13% W/V PEG 3000, 28% V/V 1,2,4- BUTANETRIOL, 1% W/V NDSB 256, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.46500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 42.46500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.33300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.16650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.46500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.49950 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.46500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.46500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.33300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 42.46500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 111.49950 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 42.46500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 37.16650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 648 REMARK 465 ALA A 649 REMARK 465 PRO A 650 REMARK 465 LYS A 651 REMARK 465 SER A 652 REMARK 465 ARG A 653 REMARK 465 ASN A 654 REMARK 465 LEU A 655 REMARK 465 PHE A 656 REMARK 465 GLU A 657 REMARK 465 ARG A 658 REMARK 465 ASN A 659 REMARK 465 PRO A 660 REMARK 465 ASN A 661 REMARK 465 LYS A 662 REMARK 465 GLU A 663 REMARK 465 LEU A 664 REMARK 465 LYS A 665 REMARK 465 PRO A 666 REMARK 465 GLY A 667 REMARK 465 GLU A 668 REMARK 465 ASN A 669 REMARK 465 SER A 670 REMARK 465 PRO A 671 REMARK 465 ARG A 672 REMARK 465 GLN A 673 REMARK 465 THR A 674 REMARK 465 PRO A 675 REMARK 465 ILE A 676 REMARK 465 PHE A 677 REMARK 465 THR A 1026 REMARK 465 PRO A 1027 REMARK 465 GLU A 1028 REMARK 465 PRO A 1029 REMARK 465 HIS A 1030 REMARK 465 GLY A 1031 REMARK 465 THR A 1032 REMARK 465 ASP A 1033 REMARK 465 GLU A 1034 REMARK 465 VAL A 1035 REMARK 465 ASP A 1036 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 748 CG CD CE NZ REMARK 470 ARG A 809 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 852 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 809 -1.76 72.75 REMARK 500 TRP A 814 71.21 -100.07 REMARK 500 THR A 855 -5.35 68.46 REMARK 500 LYS A 911 -11.39 71.12 REMARK 500 VAL A 972 -61.02 -125.78 REMARK 500 ASP A1009 108.45 -57.09 REMARK 500 SER A1020 68.63 61.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1105 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 732 OD1 REMARK 620 2 ASP A 732 OD2 61.2 REMARK 620 3 HIS A 983 NE2 107.5 81.8 REMARK 620 4 HIS A1002 NE2 141.8 94.4 96.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1107 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 859 OE2 REMARK 620 2 ASP A 954 OD2 73.3 REMARK 620 3 LYS A 971 NZ 83.6 66.2 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7NWZ RELATED DB: PDB REMARK 900 RELATED ID: 7NX3 RELATED DB: PDB REMARK 900 RELATED ID: 7NX2 RELATED DB: PDB REMARK 900 RELATED ID: 7NX1 RELATED DB: PDB REMARK 900 RELATED ID: 7NX0 RELATED DB: PDB DBREF 7NX4 A 648 1030 UNP Q9UM73 ALK_HUMAN 648 1030 SEQADV 7NX4 GLY A 1031 UNP Q9UM73 EXPRESSION TAG SEQADV 7NX4 THR A 1032 UNP Q9UM73 EXPRESSION TAG SEQADV 7NX4 ASP A 1033 UNP Q9UM73 EXPRESSION TAG SEQADV 7NX4 GLU A 1034 UNP Q9UM73 EXPRESSION TAG SEQADV 7NX4 VAL A 1035 UNP Q9UM73 EXPRESSION TAG SEQADV 7NX4 ASP A 1036 UNP Q9UM73 EXPRESSION TAG SEQRES 1 A 389 THR ALA PRO LYS SER ARG ASN LEU PHE GLU ARG ASN PRO SEQRES 2 A 389 ASN LYS GLU LEU LYS PRO GLY GLU ASN SER PRO ARG GLN SEQRES 3 A 389 THR PRO ILE PHE ASP PRO THR VAL HIS TRP LEU PHE THR SEQRES 4 A 389 THR CYS GLY ALA SER GLY PRO HIS GLY PRO THR GLN ALA SEQRES 5 A 389 GLN CYS ASN ASN ALA TYR GLN ASN SER ASN LEU SER VAL SEQRES 6 A 389 GLU VAL GLY SER GLU GLY PRO LEU LYS GLY ILE GLN ILE SEQRES 7 A 389 TRP LYS VAL PRO ALA THR ASP THR TYR SER ILE SER GLY SEQRES 8 A 389 TYR GLY ALA ALA GLY GLY LYS GLY GLY LYS ASN THR MET SEQRES 9 A 389 MET ARG SER HIS GLY VAL SER VAL LEU GLY ILE PHE ASN SEQRES 10 A 389 LEU GLU LYS ASP ASP MET LEU TYR ILE LEU VAL GLY GLN SEQRES 11 A 389 GLN GLY GLU ASP ALA CYS PRO SER THR ASN GLN LEU ILE SEQRES 12 A 389 GLN LYS VAL CYS ILE GLY GLU ASN ASN VAL ILE GLU GLU SEQRES 13 A 389 GLU ILE ARG VAL ASN ARG SER VAL HIS GLU TRP ALA GLY SEQRES 14 A 389 GLY GLY GLY GLY GLY GLY GLY ALA THR TYR VAL PHE LYS SEQRES 15 A 389 MET LYS ASP GLY VAL PRO VAL PRO LEU ILE ILE ALA ALA SEQRES 16 A 389 GLY GLY GLY GLY ARG ALA TYR GLY ALA LYS THR ASP THR SEQRES 17 A 389 PHE HIS PRO GLU ARG LEU GLU ASN ASN SER SER VAL LEU SEQRES 18 A 389 GLY LEU ASN GLY ASN SER GLY ALA ALA GLY GLY GLY GLY SEQRES 19 A 389 GLY TRP ASN ASP ASN THR SER LEU LEU TRP ALA GLY LYS SEQRES 20 A 389 SER LEU GLN GLU GLY ALA THR GLY GLY HIS SER CYS PRO SEQRES 21 A 389 GLN ALA MET LYS LYS TRP GLY TRP GLU THR ARG GLY GLY SEQRES 22 A 389 PHE GLY GLY GLY GLY GLY GLY CYS SER SER GLY GLY GLY SEQRES 23 A 389 GLY GLY GLY TYR ILE GLY GLY ASN ALA ALA SER ASN ASN SEQRES 24 A 389 ASP PRO GLU MET ASP GLY GLU ASP GLY VAL SER PHE ILE SEQRES 25 A 389 SER PRO LEU GLY ILE LEU TYR THR PRO ALA LEU LYS VAL SEQRES 26 A 389 MET GLU GLY HIS GLY GLU VAL ASN ILE LYS HIS TYR LEU SEQRES 27 A 389 ASN CYS SER HIS CYS GLU VAL ASP GLU CYS HIS MET ASP SEQRES 28 A 389 PRO GLU SER HIS LYS VAL ILE CYS PHE CYS ASP HIS GLY SEQRES 29 A 389 THR VAL LEU ALA GLU ASP GLY VAL SER CYS ILE VAL SER SEQRES 30 A 389 PRO THR PRO GLU PRO HIS GLY THR ASP GLU VAL ASP HET NAG A1101 14 HET NAG A1102 14 HET NAG A1103 14 HET NAG A1104 14 HET ZN A1105 1 HET NI A1106 1 HET NI A1107 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM NI NICKEL (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 6 ZN ZN 2+ FORMUL 7 NI 2(NI 2+) HELIX 1 AA1 THR A 697 TYR A 705 1 9 HELIX 2 AA2 GLU A 717 LYS A 721 5 5 HELIX 3 AA3 ASN A 787 ILE A 795 1 9 HELIX 4 AA4 ASN A 799 ASN A 808 1 10 HELIX 5 AA5 SER A 895 GLY A 899 5 5 SHEET 1 AA1 5 HIS A 682 PHE A 685 0 SHEET 2 AA1 5 GLU A 978 HIS A 983 -1 O VAL A 979 N PHE A 685 SHEET 3 AA1 5 ASP A 732 TYR A 739 -1 N SER A 737 O ASN A 980 SHEET 4 AA1 5 SER A 758 LEU A 765 -1 O PHE A 763 N TYR A 734 SHEET 5 AA1 5 ILE A 964 LEU A 965 -1 O ILE A 964 N ILE A 762 SHEET 1 AA2 7 GLU A 713 VAL A 714 0 SHEET 2 AA2 7 GLN A 724 LYS A 727 -1 O ILE A 725 N GLU A 713 SHEET 3 AA2 7 MET A 770 LEU A 774 -1 O ILE A 773 N GLN A 724 SHEET 4 AA2 7 THR A 825 MET A 830 -1 O TYR A 826 N LEU A 774 SHEET 5 AA2 7 PRO A 835 ALA A 841 -1 O VAL A 836 N LYS A 829 SHEET 6 AA2 7 SER A 957 ILE A 959 -1 O PHE A 958 N ILE A 840 SHEET 7 AA2 7 LEU A 861 GLU A 862 1 N GLU A 862 O ILE A 959 SHEET 1 AA3 2 CYS A 995 MET A 997 0 SHEET 2 AA3 2 VAL A1004 CYS A1006 -1 O ILE A1005 N HIS A 996 SSBOND 1 CYS A 688 CYS A 701 1555 1555 2.03 SSBOND 2 CYS A 783 CYS A 794 1555 1555 2.03 SSBOND 3 CYS A 906 CYS A 928 1555 1555 2.03 SSBOND 4 CYS A 987 CYS A 995 1555 1555 2.03 SSBOND 5 CYS A 990 CYS A 1006 1555 1555 2.03 SSBOND 6 CYS A 1008 CYS A 1021 1555 1555 2.03 LINK ND2 ASN A 808 C1 NAG A1101 1555 1555 1.45 LINK ND2 ASN A 863 C1 NAG A1104 1555 1555 1.44 LINK ND2 ASN A 864 C1 NAG A1103 1555 1555 1.44 LINK ND2 ASN A 986 C1 NAG A1102 1555 1555 1.44 LINK OD1 ASP A 732 ZN ZN A1105 1555 1555 1.95 LINK OD2 ASP A 732 ZN ZN A1105 1555 1555 2.32 LINK OE2 GLU A 859 NI NI A1107 1555 1555 2.74 LINK OD2 ASP A 954 NI NI A1107 1555 1555 2.13 LINK NZ LYS A 971 NI NI A1107 1555 1555 2.67 LINK NE2 HIS A 983 ZN ZN A1105 1555 1555 2.06 LINK NE2 HIS A1002 ZN ZN A1105 1555 6655 2.51 CISPEP 1 CYS A 783 PRO A 784 0 -0.89 CRYST1 84.930 84.930 148.666 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011774 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011774 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006726 0.00000