HEADER VIRAL PROTEIN 17-MAR-21 7NX5 TITLE CRYSTAL STRUCTURE OF THE EPSTEIN-BARR VIRUS PROTEIN ZEBRA (BZLF1, ZTA) TITLE 2 BOUND TO A METHYLATED DNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANS-ACTIVATOR PROTEIN BZLF1; COMPND 3 CHAIN: A, B, E, F; COMPND 4 SYNONYM: EB1,ZEBRA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: CHAINS A AND B FORM THE ZEBRA HOMODIMER IN COMPLEX 1. COMPND 8 CHAINS E AND F FORM THE ZEBRA HOMODIMER IN COMPLEX 2.; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MEZRE2 DNA (BOTTOM STRAND); COMPND 11 CHAIN: C, G; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: MEZRE2 DNA (TOP STRAND); COMPND 15 CHAIN: D, H; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EPSTEIN-BARR VIRUS (STRAIN B95-8); SOURCE 3 ORGANISM_COMMON: HHV-4, HUMAN HERPESVIRUS 4; SOURCE 4 ORGANISM_TAXID: 10377; SOURCE 5 STRAIN: B95-8; SOURCE 6 GENE: BZLF1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN GAMMAHERPESVIRUS 4; SOURCE 12 ORGANISM_TAXID: 10376; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HUMAN GAMMAHERPESVIRUS 4; SOURCE 16 ORGANISM_TAXID: 10376 KEYWDS DNA-BINDING PROTEIN, BZIP TRANSCRIPTION FACTOR, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.BERNAUDAT,C.PETOSA REVDAT 3 31-JAN-24 7NX5 1 REMARK REVDAT 2 02-FEB-22 7NX5 1 JRNL REVDAT 1 01-DEC-21 7NX5 0 JRNL AUTH F.BERNAUDAT,M.GUSTEMS,J.GUNTHER,M.F.OLIVA,A.BUSCHLE,C.GOBEL, JRNL AUTH 2 P.PAGNIEZ,J.LUPO,L.SIGNOR,C.W.MULLER,P.MORAND,M.SATTLER, JRNL AUTH 3 W.HAMMERSCHMIDT,C.PETOSA JRNL TITL STRUCTURAL BASIS OF DNA METHYLATION-DEPENDENT SITE JRNL TITL 2 SELECTIVITY OF THE EPSTEIN-BARR VIRUS LYTIC SWITCH PROTEIN JRNL TITL 3 ZEBRA/ZTA/BZLF1. JRNL REF NUCLEIC ACIDS RES. V. 50 490 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 34893887 JRNL DOI 10.1093/NAR/GKAB1183 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 14841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.282 REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.339 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.0000 - 4.2500 0.97 2986 158 0.2387 0.3060 REMARK 3 2 4.2500 - 3.3900 0.97 2862 154 0.2428 0.3387 REMARK 3 3 3.3900 - 2.9600 0.96 2790 156 0.3127 0.3441 REMARK 3 4 2.9600 - 2.6900 0.94 2728 160 0.3503 0.3968 REMARK 3 5 2.6900 - 2.5000 0.93 2713 134 0.3747 0.3800 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.495 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.969 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3254 REMARK 3 ANGLE : 1.159 4610 REMARK 3 CHIRALITY : 0.057 517 REMARK 3 PLANARITY : 0.006 396 REMARK 3 DIHEDRAL : 26.453 1324 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'E' AND (RESSEQ 176:221) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0027 3.0661 19.1804 REMARK 3 T TENSOR REMARK 3 T11: 0.6554 T22: 0.3911 REMARK 3 T33: 1.1180 T12: 0.1334 REMARK 3 T13: -0.0668 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 5.0568 L22: 4.2601 REMARK 3 L33: 2.0273 L12: -5.4937 REMARK 3 L13: -3.2767 L23: 3.3028 REMARK 3 S TENSOR REMARK 3 S11: 0.4900 S12: 0.4856 S13: 0.6041 REMARK 3 S21: -0.5001 S22: -0.3354 S23: -0.0635 REMARK 3 S31: -0.3729 S32: -0.1457 S33: -0.1206 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'E' AND (RESSEQ 222:236) REMARK 3 ORIGIN FOR THE GROUP (A): 41.1502 -20.7573 7.7947 REMARK 3 T TENSOR REMARK 3 T11: 1.0476 T22: 1.2032 REMARK 3 T33: 1.1601 T12: -0.1016 REMARK 3 T13: -0.4552 T23: 0.2907 REMARK 3 L TENSOR REMARK 3 L11: 0.2663 L22: 2.5563 REMARK 3 L33: 1.1415 L12: 0.5939 REMARK 3 L13: 0.4807 L23: 0.5696 REMARK 3 S TENSOR REMARK 3 S11: -0.3787 S12: 0.2557 S13: 0.6435 REMARK 3 S21: -1.5266 S22: -0.1486 S23: 1.4635 REMARK 3 S31: -1.0404 S32: -0.0136 S33: 0.5119 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'F' AND (RESSEQ 174:198) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4117 -0.2883 21.4113 REMARK 3 T TENSOR REMARK 3 T11: 0.5204 T22: 0.7087 REMARK 3 T33: 1.2137 T12: 0.1841 REMARK 3 T13: 0.1852 T23: 0.3799 REMARK 3 L TENSOR REMARK 3 L11: 9.9747 L22: 2.3856 REMARK 3 L33: 1.3619 L12: -3.9265 REMARK 3 L13: 0.6270 L23: 0.9109 REMARK 3 S TENSOR REMARK 3 S11: 0.6172 S12: -0.5296 S13: 0.3244 REMARK 3 S21: -0.9092 S22: -0.4568 S23: -1.5413 REMARK 3 S31: -0.3568 S32: 0.3343 S33: -0.0390 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'F' AND (RESSEQ 199:235) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4607 -10.6891 13.9871 REMARK 3 T TENSOR REMARK 3 T11: 0.4817 T22: 0.6587 REMARK 3 T33: 0.8776 T12: 0.1569 REMARK 3 T13: -0.0476 T23: 0.4250 REMARK 3 L TENSOR REMARK 3 L11: 3.0692 L22: 3.6773 REMARK 3 L33: 2.7519 L12: -0.7529 REMARK 3 L13: -0.8093 L23: 0.1464 REMARK 3 S TENSOR REMARK 3 S11: -0.5766 S12: -0.0042 S13: -0.6216 REMARK 3 S21: -0.3447 S22: 0.5825 S23: 1.7084 REMARK 3 S31: -0.1873 S32: 0.2259 S33: -0.0208 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 176:218) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1679 -9.7049 -19.9246 REMARK 3 T TENSOR REMARK 3 T11: 0.2742 T22: 0.3414 REMARK 3 T33: 0.3995 T12: -0.1363 REMARK 3 T13: 0.0210 T23: -0.0957 REMARK 3 L TENSOR REMARK 3 L11: 6.8692 L22: 8.0366 REMARK 3 L33: 3.1195 L12: -7.5927 REMARK 3 L13: -4.7798 L23: 4.3285 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: -0.0527 S13: 0.2056 REMARK 3 S21: -0.3535 S22: 0.2198 S23: -0.0977 REMARK 3 S31: -0.1338 S32: 0.1364 S33: -0.0445 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 219:236) REMARK 3 ORIGIN FOR THE GROUP (A): 52.1902 -33.2465 -32.7997 REMARK 3 T TENSOR REMARK 3 T11: 1.1228 T22: 0.2841 REMARK 3 T33: 0.6813 T12: -0.0326 REMARK 3 T13: 0.2742 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.9177 L22: 2.2788 REMARK 3 L33: 3.1686 L12: 1.3279 REMARK 3 L13: -0.3641 L23: -1.5446 REMARK 3 S TENSOR REMARK 3 S11: 0.3662 S12: 0.4545 S13: 0.5673 REMARK 3 S21: -2.2916 S22: -0.1462 S23: -0.4869 REMARK 3 S31: 0.2135 S32: -0.3220 S33: -0.1623 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 174:221) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0488 -20.0353 -21.1857 REMARK 3 T TENSOR REMARK 3 T11: 0.3828 T22: 0.3365 REMARK 3 T33: 0.1992 T12: -0.0694 REMARK 3 T13: 0.0690 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 2.3643 L22: 3.3002 REMARK 3 L33: 1.6187 L12: -2.8464 REMARK 3 L13: -1.4019 L23: 1.3290 REMARK 3 S TENSOR REMARK 3 S11: 0.2170 S12: 0.2552 S13: -0.3387 REMARK 3 S21: -0.5104 S22: -0.0819 S23: -0.0150 REMARK 3 S31: 0.0374 S32: 0.0834 S33: -0.0036 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 222:235) REMARK 3 ORIGIN FOR THE GROUP (A): 61.4573 -20.6997 -28.4016 REMARK 3 T TENSOR REMARK 3 T11: 1.0546 T22: 1.0190 REMARK 3 T33: 0.7531 T12: -0.2656 REMARK 3 T13: 0.3109 T23: -0.4618 REMARK 3 L TENSOR REMARK 3 L11: 3.0614 L22: 7.2659 REMARK 3 L33: 8.4234 L12: 1.1757 REMARK 3 L13: -1.7719 L23: -0.5169 REMARK 3 S TENSOR REMARK 3 S11: -0.5787 S12: 0.4233 S13: -0.6079 REMARK 3 S21: -1.2307 S22: 0.3654 S23: -1.6668 REMARK 3 S31: 0.1704 S32: 1.1548 S33: 0.1061 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'G' REMARK 3 ORIGIN FOR THE GROUP (A): 9.2937 7.5286 24.0885 REMARK 3 T TENSOR REMARK 3 T11: 0.7746 T22: 0.8357 REMARK 3 T33: 1.4881 T12: 0.0973 REMARK 3 T13: 0.1056 T23: 0.2847 REMARK 3 L TENSOR REMARK 3 L11: 1.0426 L22: 4.9617 REMARK 3 L33: 2.0093 L12: 0.0800 REMARK 3 L13: -1.2397 L23: 0.5198 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: 0.3587 S13: -0.2637 REMARK 3 S21: -0.6679 S22: 0.4611 S23: -1.1018 REMARK 3 S31: 1.4290 S32: -0.8070 S33: -0.1930 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'H' REMARK 3 ORIGIN FOR THE GROUP (A): 11.4673 9.4620 26.9853 REMARK 3 T TENSOR REMARK 3 T11: 0.3611 T22: 0.7285 REMARK 3 T33: 1.7479 T12: 0.4572 REMARK 3 T13: -0.0730 T23: 0.8806 REMARK 3 L TENSOR REMARK 3 L11: 4.6017 L22: 3.5052 REMARK 3 L33: 2.2484 L12: -1.8599 REMARK 3 L13: 1.3073 L23: -1.6523 REMARK 3 S TENSOR REMARK 3 S11: 1.2374 S12: -0.6376 S13: 0.2064 REMARK 3 S21: 0.0066 S22: -0.4213 S23: -0.8692 REMARK 3 S31: -0.3716 S32: -0.3163 S33: -0.0535 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): 19.1020 -6.9014 -14.5309 REMARK 3 T TENSOR REMARK 3 T11: 0.2183 T22: 0.5601 REMARK 3 T33: 0.3575 T12: 0.0079 REMARK 3 T13: 0.0017 T23: -0.0725 REMARK 3 L TENSOR REMARK 3 L11: 7.0186 L22: 8.3334 REMARK 3 L33: 8.1353 L12: 1.0682 REMARK 3 L13: 2.0336 L23: 1.1326 REMARK 3 S TENSOR REMARK 3 S11: 0.6458 S12: 0.0087 S13: -0.6619 REMARK 3 S21: 0.6081 S22: -0.4032 S23: 0.3497 REMARK 3 S31: 0.2992 S32: -0.1403 S33: -0.3821 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' REMARK 3 ORIGIN FOR THE GROUP (A): 19.9668 -5.0369 -16.4320 REMARK 3 T TENSOR REMARK 3 T11: 0.3868 T22: 0.9249 REMARK 3 T33: 0.3216 T12: -0.1197 REMARK 3 T13: -0.0489 T23: -0.0873 REMARK 3 L TENSOR REMARK 3 L11: 4.4010 L22: 5.1475 REMARK 3 L33: 1.5779 L12: 0.2594 REMARK 3 L13: 0.4879 L23: -1.5596 REMARK 3 S TENSOR REMARK 3 S11: 0.3943 S12: 0.8757 S13: -0.0679 REMARK 3 S21: 0.5738 S22: -0.6370 S23: 0.3678 REMARK 3 S31: -0.9288 S32: 1.4096 S33: 0.2185 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ELECTRON DENSITY IS BETTER DEFINED REMARK 3 FOR COMPLEX 1 (CHAINS A-D) THAN FOR COMPLEX 2 (CHAIN E-H). REMARK 3 COMPLEX 2 EXHIBITS HIGH B FACTORS AND TWO-FOLD DISORDER AROUND REMARK 3 THE DNA PSEUDODYAD DUE TO A LACK OF STABILIZING CRYSTALLIZATION REMARK 3 CONTACTS. REMARK 4 REMARK 4 7NX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8730 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15447 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.632 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.72 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2C9L REMARK 200 REMARK 200 REMARK: NEEDLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% POLYETHYLENE GLYCOL (PEG) 4K, 18% REMARK 280 PEG 400, 50 MM SODIUM ACETATE PH 4 AND 20% ISOPROPANOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 103.99500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 13.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 103.99500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 13.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH G 107 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 236 REMARK 465 MET B 174 REMARK 465 LEU B 175 REMARK 465 DT C -10 REMARK 465 DA C -9 REMARK 465 DT C 8 REMARK 465 DA D -9 REMARK 465 DA D -8 REMARK 465 DT D 9 REMARK 465 MET E 174 REMARK 465 LEU E 175 REMARK 465 ASP F 236 REMARK 465 DT G -10 REMARK 465 DA G -9 REMARK 465 DC G -8 REMARK 465 DG G 6 REMARK 465 DC G 7 REMARK 465 DT G 8 REMARK 465 DA H -9 REMARK 465 DA H -8 REMARK 465 DG H -7 REMARK 465 DA H 6 REMARK 465 DA H 7 REMARK 465 DG H 8 REMARK 465 DT H 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 174 CG SD CE REMARK 470 LEU A 175 CG CD1 CD2 REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 470 SER A 224 CB OG REMARK 470 GLU B 176 CB CG CD OE1 OE2 REMARK 470 ILE B 177 CG2 CD1 REMARK 470 SER B 224 OG REMARK 470 LEU B 225 CD1 CD2 REMARK 470 DC C -8 P OP1 OP2 O5' C5' REMARK 470 DG D -7 P OP1 OP2 REMARK 470 GLU E 176 CG CD OE1 OE2 REMARK 470 ARG E 179 CG CD NE CZ NH1 NH2 REMARK 470 VAL E 184 CG1 CG2 REMARK 470 LYS E 219 CD CE NZ REMARK 470 ASP E 226 CG OD1 OD2 REMARK 470 ASP E 228 CB CG OD1 OD2 REMARK 470 SER E 229 OG REMARK 470 ARG E 233 CG CD NE CZ NH1 NH2 REMARK 470 THR E 234 CB OG1 CG2 REMARK 470 ASP E 236 CG OD1 OD2 REMARK 470 GLU F 176 CG CD OE1 OE2 REMARK 470 LYS F 181 CG CD CE NZ REMARK 470 SER F 186 OG REMARK 470 ARG F 190 CG CD NE CZ NH1 NH2 REMARK 470 LEU F 197 CG CD1 CD2 REMARK 470 TYR F 200 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 DT G -7 P OP1 OP2 N1 C2 O2 N3 REMARK 470 DT G -7 C4 O4 C5 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 304 O HOH E 310 2.02 REMARK 500 OD2 ASP A 226 O HOH A 301 2.09 REMARK 500 OP2 DG G -1 O HOH G 101 2.15 REMARK 500 OE1 GLN A 220 O HOH A 302 2.16 REMARK 500 O3' DG H 5 O HOH H 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH G 106 O HOH G 106 2555 1.93 REMARK 500 NH2 ARG E 183 OP1 DA H -1 1565 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 7 C4 DC C 7 N4 -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C -8 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT C -7 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG C 4 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG C 6 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT D 4 C3' - C2' - C1' ANGL. DEV. = -6.1 DEGREES REMARK 500 DT D 4 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG D 5 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG D 8 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG G 4 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 222 68.69 -113.93 REMARK 500 SER A 224 46.72 -107.96 REMARK 500 ASP A 228 2.97 -68.69 REMARK 500 SER B 224 35.39 -75.83 REMARK 500 LEU F 175 33.50 -86.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH G 106 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH G 107 DISTANCE = 6.35 ANGSTROMS DBREF 7NX5 A 175 236 UNP P03206 BZLF1_EBVB9 175 236 DBREF 7NX5 B 175 236 UNP P03206 BZLF1_EBVB9 175 236 DBREF 7NX5 C -10 8 PDB 7NX5 7NX5 -10 8 DBREF 7NX5 D -9 9 PDB 7NX5 7NX5 -9 9 DBREF 7NX5 E 175 236 UNP P03206 BZLF1_EBVB9 175 236 DBREF 7NX5 F 175 236 UNP P03206 BZLF1_EBVB9 175 236 DBREF 7NX5 G -10 8 PDB 7NX5 7NX5 -10 8 DBREF 7NX5 H -9 9 PDB 7NX5 7NX5 -9 9 SEQADV 7NX5 MET A 174 UNP P03206 INITIATING METHIONINE SEQADV 7NX5 SER A 189 UNP P03206 CYS 189 ENGINEERED MUTATION SEQADV 7NX5 MET B 174 UNP P03206 INITIATING METHIONINE SEQADV 7NX5 SER B 189 UNP P03206 CYS 189 ENGINEERED MUTATION SEQADV 7NX5 MET E 174 UNP P03206 INITIATING METHIONINE SEQADV 7NX5 SER E 189 UNP P03206 CYS 189 ENGINEERED MUTATION SEQADV 7NX5 MET F 174 UNP P03206 INITIATING METHIONINE SEQADV 7NX5 SER F 189 UNP P03206 CYS 189 ENGINEERED MUTATION SEQRES 1 A 63 MET LEU GLU ILE LYS ARG TYR LYS ASN ARG VAL ALA SER SEQRES 2 A 63 ARG LYS SER ARG ALA LYS PHE LYS GLN LEU LEU GLN HIS SEQRES 3 A 63 TYR ARG GLU VAL ALA ALA ALA LYS SER SER GLU ASN ASP SEQRES 4 A 63 ARG LEU ARG LEU LEU LEU LYS GLN MET CYS PRO SER LEU SEQRES 5 A 63 ASP VAL ASP SER ILE ILE PRO ARG THR PRO ASP SEQRES 1 B 63 MET LEU GLU ILE LYS ARG TYR LYS ASN ARG VAL ALA SER SEQRES 2 B 63 ARG LYS SER ARG ALA LYS PHE LYS GLN LEU LEU GLN HIS SEQRES 3 B 63 TYR ARG GLU VAL ALA ALA ALA LYS SER SER GLU ASN ASP SEQRES 4 B 63 ARG LEU ARG LEU LEU LEU LYS GLN MET CYS PRO SER LEU SEQRES 5 B 63 ASP VAL ASP SER ILE ILE PRO ARG THR PRO ASP SEQRES 1 C 19 DT DA DC DT DT DC DA DT 5CM DG DC DT DC SEQRES 2 C 19 DA DG DT DG DC DT SEQRES 1 D 19 DA DA DG DC DA DC DT DG DA DG 5CM DG DA SEQRES 2 D 19 DT DG DA DA DG DT SEQRES 1 E 63 MET LEU GLU ILE LYS ARG TYR LYS ASN ARG VAL ALA SER SEQRES 2 E 63 ARG LYS SER ARG ALA LYS PHE LYS GLN LEU LEU GLN HIS SEQRES 3 E 63 TYR ARG GLU VAL ALA ALA ALA LYS SER SER GLU ASN ASP SEQRES 4 E 63 ARG LEU ARG LEU LEU LEU LYS GLN MET CYS PRO SER LEU SEQRES 5 E 63 ASP VAL ASP SER ILE ILE PRO ARG THR PRO ASP SEQRES 1 F 63 MET LEU GLU ILE LYS ARG TYR LYS ASN ARG VAL ALA SER SEQRES 2 F 63 ARG LYS SER ARG ALA LYS PHE LYS GLN LEU LEU GLN HIS SEQRES 3 F 63 TYR ARG GLU VAL ALA ALA ALA LYS SER SER GLU ASN ASP SEQRES 4 F 63 ARG LEU ARG LEU LEU LEU LYS GLN MET CYS PRO SER LEU SEQRES 5 F 63 ASP VAL ASP SER ILE ILE PRO ARG THR PRO ASP SEQRES 1 G 19 DT DA DC DT DT DC DA DT 5CM DG DC DT DC SEQRES 2 G 19 DA DG DT DG DC DT SEQRES 1 H 19 DA DA DG DC DA DC DT DG DA DG 5CM DG DA SEQRES 2 H 19 DT DG DA DA DG DT HET 5CM C -2 20 HET 5CM D 1 20 HET 5CM G -2 20 HET 5CM H 1 20 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE FORMUL 3 5CM 4(C10 H16 N3 O7 P) FORMUL 9 HOH *65(H2 O) HELIX 1 AA1 LEU A 175 CYS A 222 1 48 HELIX 2 AA2 ASP A 226 ILE A 231 1 6 HELIX 3 AA3 ILE B 177 CYS B 222 1 46 HELIX 4 AA4 ILE E 177 CYS E 222 1 46 HELIX 5 AA5 ASP E 226 ILE E 231 1 6 HELIX 6 AA6 LEU F 175 CYS F 222 1 48 HELIX 7 AA7 ASP F 226 ILE F 231 1 6 LINK O3' DT C -3 P 5CM C -2 1555 1555 1.60 LINK O3' 5CM C -2 P DG C -1 1555 1555 1.61 LINK O3' DG D 0 P 5CM D 1 1555 1555 1.61 LINK O3' 5CM D 1 P DG D 2 1555 1555 1.61 LINK O3' DT G -3 P 5CM G -2 1555 1555 1.60 LINK O3' 5CM G -2 P DG G -1 1555 1555 1.61 LINK O3' DG H 0 P 5CM H 1 1555 1555 1.59 LINK O3' 5CM H 1 P DG H 2 1555 1555 1.60 CRYST1 207.990 26.560 80.850 90.00 103.10 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004808 0.000000 0.001119 0.00000 SCALE2 0.000000 0.037651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012699 0.00000