HEADER ANTIMICROBIAL PROTEIN 18-MAR-21 7NXI TITLE PAF-D19S IN 50 V/V % DMSO-WATER SOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PC24G00380 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENICILLIUM RUBENS (STRAIN ATCC 28089 / DSM SOURCE 3 1075 / NRRL 1951 / WISCONSIN 54-1255); SOURCE 4 ORGANISM_COMMON: PENICILLIUM CHRYSOGENUM; SOURCE 5 ORGANISM_TAXID: 500485; SOURCE 6 ATCC: 10002; SOURCE 7 GENE: PC24G00380, PCH_PC24G00380; SOURCE 8 EXPRESSION_SYSTEM: PENICILLIUM RUBENS WISCONSIN 54-1255; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 500485; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: PAF_D19S; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PSK275PAFD19S KEYWDS DISULPHIDE PROTEIN, PAF D19S MUTANT, SOLUTION STRUCTURE, STRUCTURE KEYWDS 2 FROM CYANA 2.1, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.CZAJLIK,G.BATTA REVDAT 3 14-JUN-23 7NXI 1 REMARK REVDAT 2 15-FEB-23 7NXI 1 JRNL REVDAT 1 30-MAR-22 7NXI 0 JRNL AUTH A.CZAJLIK,A.BATTA,K.KERNER,A.FIZIL,D.HAJDU,M.RAICS, JRNL AUTH 2 K.E.KOVER,G.BATTA JRNL TITL DMSO-INDUCED UNFOLDING OF THE ANTIFUNGAL DISULFIDE PROTEIN JRNL TITL 2 PAF AND ITS INACTIVE VARIANT: A COMBINED NMR AND DSC STUDY. JRNL REF INT J MOL SCI V. 24 2023 JRNL REFN ESSN 1422-0067 JRNL PMID 36674720 JRNL DOI 10.3390/IJMS24021208 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NXI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292112424. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.007 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MM [U-100% 2H] ACETIC ACID, REMARK 210 50 % V/V H2O, 50 % V/V [U-100% REMARK 210 2H] DMSO, 1.7 MM [U-100% 15N] REMARK 210 PAF D19S, 50% H2O/50% DMSO REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H NOESY; REMARK 210 2D 1H-1H TOCSY; 3D HNHA; 3D HNHB; REMARK 210 3D 1H-15N TOCSY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.1, CCPNMR ANALYSIS REMARK 210 2.4.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 18 -177.60 -57.98 REMARK 500 1 ALA A 20 -38.29 -174.11 REMARK 500 1 PHE A 31 -169.52 -62.93 REMARK 500 1 ASN A 33 -41.64 -149.48 REMARK 500 1 LYS A 38 131.99 -176.55 REMARK 500 1 ASN A 41 -167.12 -68.85 REMARK 500 1 ASN A 49 26.93 -164.00 REMARK 500 2 ASN A 12 61.06 63.27 REMARK 500 2 ASN A 18 -166.27 -61.55 REMARK 500 2 ALA A 20 -37.57 -165.03 REMARK 500 2 LYS A 22 -168.36 -129.25 REMARK 500 2 PHE A 31 -178.27 -57.90 REMARK 500 2 ASN A 33 14.25 -143.84 REMARK 500 2 CYS A 36 101.86 -53.91 REMARK 500 2 LYS A 38 140.24 -178.74 REMARK 500 2 ASN A 41 -167.21 -72.88 REMARK 500 2 ASN A 49 26.88 -164.14 REMARK 500 3 ASN A 18 177.94 -55.19 REMARK 500 3 ALA A 20 -36.91 -173.22 REMARK 500 3 ASN A 33 26.28 -145.22 REMARK 500 3 LYS A 34 -39.81 -153.52 REMARK 500 3 LYS A 35 164.19 -49.55 REMARK 500 3 ASN A 41 -169.60 -64.54 REMARK 500 3 ASN A 49 28.05 -166.94 REMARK 500 4 ASN A 12 85.29 51.43 REMARK 500 4 ASN A 18 -177.24 -58.16 REMARK 500 4 ALA A 20 -37.96 -169.64 REMARK 500 4 ASN A 33 -56.85 -157.37 REMARK 500 4 LYS A 38 138.08 -178.71 REMARK 500 4 ASN A 41 -164.14 -70.74 REMARK 500 4 ASN A 49 26.55 -163.65 REMARK 500 5 ASN A 18 -166.25 -61.42 REMARK 500 5 ALA A 20 -37.30 -164.82 REMARK 500 5 LYS A 22 -167.22 -128.06 REMARK 500 5 PHE A 31 -174.58 -64.68 REMARK 500 5 ASN A 33 13.70 -143.27 REMARK 500 5 LYS A 34 -40.05 -136.08 REMARK 500 5 LYS A 35 151.48 -49.74 REMARK 500 5 ASN A 41 -168.40 -74.43 REMARK 500 5 ASN A 49 29.46 -168.25 REMARK 500 5 CYS A 54 103.61 -58.92 REMARK 500 6 ASN A 18 -178.18 -58.21 REMARK 500 6 ALA A 20 -34.82 -178.51 REMARK 500 6 LYS A 34 -42.10 -148.86 REMARK 500 6 ASN A 41 -164.72 -69.39 REMARK 500 6 ASN A 49 27.22 -164.54 REMARK 500 7 ALA A 20 20.63 -162.59 REMARK 500 7 ASN A 33 12.15 -140.81 REMARK 500 7 LYS A 34 -40.24 -131.88 REMARK 500 7 LYS A 38 134.03 -177.94 REMARK 500 REMARK 500 THIS ENTRY HAS 163 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34612 RELATED DB: BMRB REMARK 900 PAF-D19S IN 50 V/V % DMSO-WATER SOLUTION DBREF 7NXI A 1 55 UNP B6HWK0 B6HWK0_PENRW 38 92 SEQADV 7NXI SER A 19 UNP B6HWK0 ASP 56 ENGINEERED MUTATION SEQRES 1 A 55 ALA LYS TYR THR GLY LYS CYS THR LYS SER LYS ASN GLU SEQRES 2 A 55 CYS LYS TYR LYS ASN SER ALA GLY LYS ASP THR PHE ILE SEQRES 3 A 55 LYS CYS PRO LYS PHE ASP ASN LYS LYS CYS THR LYS ASP SEQRES 4 A 55 ASN ASN LYS CYS THR VAL ASP THR TYR ASN ASN ALA VAL SEQRES 5 A 55 ASP CYS ASP SHEET 1 AA1 5 THR A 24 LYS A 27 0 SHEET 2 AA1 5 GLU A 13 TYR A 16 -1 N TYR A 16 O THR A 24 SHEET 3 AA1 5 TYR A 3 THR A 8 -1 N LYS A 6 O LYS A 15 SHEET 4 AA1 5 ASN A 41 VAL A 45 -1 O VAL A 45 N TYR A 3 SHEET 5 AA1 5 ASP A 53 CYS A 54 -1 O ASP A 53 N THR A 44 SSBOND 1 CYS A 7 CYS A 36 1555 1555 1.86 SSBOND 2 CYS A 14 CYS A 43 1555 1555 2.13 SSBOND 3 CYS A 28 CYS A 54 1555 1555 1.88 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1