HEADER VIRAL PROTEIN 19-MAR-21 7NXP
TITLE STRUCTURE OF THE C-TERMINAL DOMAIN OF THE PUL77 CAPSID PROTEIN FROM
TITLE 2 HUMAN CYTOMEGALOVIRUS (HCMV)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CAPSID VERTEX COMPONENT 2;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN CYTOMEGALOVIRUS;
SOURCE 3 ORGANISM_TAXID: 10359;
SOURCE 4 GENE: CVC2;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS HERPESVIRUS, CAPSID, HCMV, ASSEMBLY, VIRAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR P.NANIIMA,P.LEGRAND,T.KREY
REVDAT 3 31-JAN-24 7NXP 1 REMARK
REVDAT 2 17-NOV-21 7NXP 1 JRNL
REVDAT 1 13-OCT-21 7NXP 0
JRNL AUTH P.NANIIMA,E.NAIMO,S.KOCH,U.CURTH,K.R.ALKHARSAH,L.J.STROH,
JRNL AUTH 2 A.BINZ,J.M.BENEKE,B.VOLLMER,H.BONING,E.M.BORST,P.DESAI,
JRNL AUTH 3 J.BOHNE,M.MESSERLE,R.BAUERFEIND,P.LEGRAND,B.SODEIK,
JRNL AUTH 4 T.F.SCHULZ,T.KREY
JRNL TITL ASSEMBLY OF INFECTIOUS KAPOSI'S SARCOMA-ASSOCIATED
JRNL TITL 2 HERPESVIRUS PROGENY REQUIRES FORMATION OF A PORF19 PENTAMER.
JRNL REF PLOS BIOL. V. 19 01423 2021
JRNL REFN ESSN 1545-7885
JRNL PMID 34735435
JRNL DOI 10.1371/JOURNAL.PBIO.3001423
REMARK 2
REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.4
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.65
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 3 NUMBER OF REFLECTIONS : 55350
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.192
REMARK 3 R VALUE (WORKING SET) : 0.192
REMARK 3 FREE R VALUE : 0.208
REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT : 2812
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.91
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.75
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL
REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : 0.3382
REMARK 3 BIN FREE R VALUE : 0.3470
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 51
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3401
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 12
REMARK 3 SOLVENT ATOMS : 184
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.55
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -3.70270
REMARK 3 B22 (A**2) : -3.70270
REMARK 3 B33 (A**2) : 7.40540
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.109
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.101
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.108
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.101
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3522 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4797 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1169 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 592 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3522 ; 10.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 422 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 2529 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 0.88
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.20
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.99
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 12
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: {A|1 - 114}
REMARK 3 ORIGIN FOR THE GROUP (A): -36.5525 66.2171 2.3286
REMARK 3 T TENSOR
REMARK 3 T11: 0.0032 T22: -0.0216
REMARK 3 T33: -0.0165 T12: -0.0422
REMARK 3 T13: -0.022 T23: 0.0284
REMARK 3 L TENSOR
REMARK 3 L11: 0.5535 L22: 0.3042
REMARK 3 L33: 0.5786 L12: 0.22
REMARK 3 L13: -0.1401 L23: -0.1611
REMARK 3 S TENSOR
REMARK 3 S11: 0.1257 S12: 0.0854 S13: -0.0634
REMARK 3 S21: 0.0854 S22: -0.0652 S23: 0.0108
REMARK 3 S31: -0.0634 S32: 0.0108 S33: -0.0606
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: {A|115 - 122}
REMARK 3 ORIGIN FOR THE GROUP (A): -16.721 74.5571 -24.1272
REMARK 3 T TENSOR
REMARK 3 T11: 0.0561 T22: 0.1172
REMARK 3 T33: -0.0662 T12: 0.0479
REMARK 3 T13: 0.0603 T23: 0.0936
REMARK 3 L TENSOR
REMARK 3 L11: 0.2271 L22: 1.2426
REMARK 3 L33: 0.7318 L12: 0.0788
REMARK 3 L13: 1.3284 L23: 2.8355
REMARK 3 S TENSOR
REMARK 3 S11: -0.0025 S12: -0.1347 S13: -0.072
REMARK 3 S21: -0.1347 S22: -0.1451 S23: 0.102
REMARK 3 S31: -0.072 S32: 0.102 S33: 0.1477
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: {A|123 - 144}
REMARK 3 ORIGIN FOR THE GROUP (A): -22.1849 64.5576 -20.8916
REMARK 3 T TENSOR
REMARK 3 T11: 0.0041 T22: 0.0719
REMARK 3 T33: -0.0544 T12: 0.0103
REMARK 3 T13: 0.0018 T23: 0.0053
REMARK 3 L TENSOR
REMARK 3 L11: 0.5573 L22: 2.7561
REMARK 3 L33: 0.4937 L12: -0.0397
REMARK 3 L13: 0.3265 L23: 0.9022
REMARK 3 S TENSOR
REMARK 3 S11: 0.0189 S12: -0.1513 S13: -0.0299
REMARK 3 S21: -0.1513 S22: 0.1215 S23: 0.1271
REMARK 3 S31: -0.0299 S32: 0.1271 S33: -0.1404
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: {A|145 - 168}
REMARK 3 ORIGIN FOR THE GROUP (A): -16.2192 47.6948 -8.2209
REMARK 3 T TENSOR
REMARK 3 T11: 0.0363 T22: -0.0441
REMARK 3 T33: 0.0258 T12: 0.0487
REMARK 3 T13: -0.0552 T23: 0.0268
REMARK 3 L TENSOR
REMARK 3 L11: 0 L22: 0.6651
REMARK 3 L33: 8.3095 L12: -0.6283
REMARK 3 L13: 0.791 L23: 1.0116
REMARK 3 S TENSOR
REMARK 3 S11: 0.0549 S12: 0.0351 S13: 0.5442
REMARK 3 S21: 0.0351 S22: -0.1184 S23: 0.0315
REMARK 3 S31: 0.5442 S32: 0.0315 S33: 0.0635
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: {A|169 - 186}
REMARK 3 ORIGIN FOR THE GROUP (A): -8.9139 56.1702 -0.4357
REMARK 3 T TENSOR
REMARK 3 T11: -0.0714 T22: 0.0523
REMARK 3 T33: 0.026 T12: 0.0189
REMARK 3 T13: -0.0602 T23: 0.0128
REMARK 3 L TENSOR
REMARK 3 L11: 0.8541 L22: 0.3414
REMARK 3 L33: 1.8294 L12: 0.3036
REMARK 3 L13: 0.9615 L23: 0.848
REMARK 3 S TENSOR
REMARK 3 S11: 0.2205 S12: -0.0449 S13: -0.0125
REMARK 3 S21: -0.0449 S22: -0.0493 S23: 0.1008
REMARK 3 S31: -0.0125 S32: 0.1008 S33: -0.1712
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: {A|187 - 201}
REMARK 3 ORIGIN FOR THE GROUP (A): -9.3003 57.9151 -16.8192
REMARK 3 T TENSOR
REMARK 3 T11: -0.031 T22: 0.0486
REMARK 3 T33: 0.0165 T12: 0.1029
REMARK 3 T13: 0.0101 T23: -0.0302
REMARK 3 L TENSOR
REMARK 3 L11: 0.0552 L22: 1.6246
REMARK 3 L33: 1.1926 L12: 1.4483
REMARK 3 L13: 1.0219 L23: 0.0251
REMARK 3 S TENSOR
REMARK 3 S11: 0.2289 S12: -0.14 S13: 0.1069
REMARK 3 S21: -0.14 S22: -0.0368 S23: 0.1052
REMARK 3 S31: 0.1069 S32: 0.1052 S33: -0.1921
REMARK 3
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: {A|202 - 221}
REMARK 3 ORIGIN FOR THE GROUP (A): 5.3442 61.3034 -12.8416
REMARK 3 T TENSOR
REMARK 3 T11: -0.0824 T22: 0.1472
REMARK 3 T33: -0.0374 T12: 0.0349
REMARK 3 T13: -0.0291 T23: -0.0245
REMARK 3 L TENSOR
REMARK 3 L11: 5.6467 L22: 0
REMARK 3 L33: 0 L12: 2.3378
REMARK 3 L13: 2.5592 L23: -0.2471
REMARK 3 S TENSOR
REMARK 3 S11: -0.1666 S12: -0.0237 S13: -0.0812
REMARK 3 S21: -0.0237 S22: 0.1163 S23: 0.0986
REMARK 3 S31: -0.0812 S32: 0.0986 S33: 0.0503
REMARK 3
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: {A|222 - 242}
REMARK 3 ORIGIN FOR THE GROUP (A): -8.4087 75.2797 -11.2968
REMARK 3 T TENSOR
REMARK 3 T11: -0.1088 T22: 0.0321
REMARK 3 T33: 0.0666 T12: -0.0133
REMARK 3 T13: -0.021 T23: 0.0919
REMARK 3 L TENSOR
REMARK 3 L11: 0.5022 L22: 5.8752
REMARK 3 L33: 5.2091 L12: -0.2008
REMARK 3 L13: -2.3352 L23: 2.7123
REMARK 3 S TENSOR
REMARK 3 S11: 0.1963 S12: 0.1942 S13: -0.0738
REMARK 3 S21: 0.1942 S22: -0.2717 S23: 0.1621
REMARK 3 S31: -0.0738 S32: 0.1621 S33: 0.0754
REMARK 3
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: {A|243 - 362}
REMARK 3 ORIGIN FOR THE GROUP (A): -31.3653 64.8914 -8.765
REMARK 3 T TENSOR
REMARK 3 T11: -0.004 T22: 0.0019
REMARK 3 T33: -0.01 T12: -0.0249
REMARK 3 T13: -0.0225 T23: 0.0264
REMARK 3 L TENSOR
REMARK 3 L11: 0.5617 L22: 0.2587
REMARK 3 L33: 0.3019 L12: -0.0948
REMARK 3 L13: 0.1099 L23: -0.1139
REMARK 3 S TENSOR
REMARK 3 S11: 0.0606 S12: -0.053 S13: 0.0306
REMARK 3 S21: -0.053 S22: 0.0053 S23: 0.0145
REMARK 3 S31: 0.0306 S32: 0.0145 S33: -0.0659
REMARK 3
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: {A|363 - 400}
REMARK 3 ORIGIN FOR THE GROUP (A): -27.7424 56.0508 12.258
REMARK 3 T TENSOR
REMARK 3 T11: -0.0403 T22: 0.0284
REMARK 3 T33: 0.015 T12: -0.0515
REMARK 3 T13: -0.0393 T23: 0.0814
REMARK 3 L TENSOR
REMARK 3 L11: 0.4712 L22: 0
REMARK 3 L33: 3.3675 L12: -0.4455
REMARK 3 L13: 1.1629 L23: 1.4402
REMARK 3 S TENSOR
REMARK 3 S11: 0.0854 S12: -0.0564 S13: -0.0327
REMARK 3 S21: -0.0564 S22: -0.0983 S23: -0.1848
REMARK 3 S31: -0.0327 S32: -0.1848 S33: 0.0129
REMARK 3
REMARK 3 TLS GROUP : 11
REMARK 3 SELECTION: {A|401 - 406}
REMARK 3 ORIGIN FOR THE GROUP (A): -19.9367 60.8977 14.9649
REMARK 3 T TENSOR
REMARK 3 T11: -0.0361 T22: 0.1164
REMARK 3 T33: -0.0518 T12: -0.0712
REMARK 3 T13: -0.0248 T23: 0.0341
REMARK 3 L TENSOR
REMARK 3 L11: 2.3318 L22: 0.5236
REMARK 3 L33: 3.5185 L12: 0.0626
REMARK 3 L13: 2.9104 L23: 0.0698
REMARK 3 S TENSOR
REMARK 3 S11: 0.1253 S12: 0.0327 S13: -0.0941
REMARK 3 S21: 0.0327 S22: -0.1784 S23: 0.3327
REMARK 3 S31: -0.0941 S32: 0.3327 S33: 0.0532
REMARK 3
REMARK 3 TLS GROUP : 12
REMARK 3 SELECTION: {A|407 - 466}
REMARK 3 ORIGIN FOR THE GROUP (A): -36.462 56.3515 -5.3848
REMARK 3 T TENSOR
REMARK 3 T11: -0.0048 T22: -0.0213
REMARK 3 T33: 0.0113 T12: -0.035
REMARK 3 T13: -0.0436 T23: 0.0273
REMARK 3 L TENSOR
REMARK 3 L11: 1.0424 L22: 0
REMARK 3 L33: 0.8351 L12: 0.1796
REMARK 3 L13: -0.0391 L23: 0.0876
REMARK 3 S TENSOR
REMARK 3 S11: 0.0547 S12: -0.0028 S13: 0.1089
REMARK 3 S21: -0.0028 S22: -0.0156 S23: -0.0398
REMARK 3 S31: 0.1089 S32: -0.0398 S33: -0.0392
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7NXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAR-21.
REMARK 100 THE DEPOSITION ID IS D_1292114735.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 31-MAR-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SOLEIL
REMARK 200 BEAMLINE : PROXIMA 1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.978570
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55350
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.896
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 200 DATA REDUNDANCY : 8.600
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6600
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 2F5U
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 65.47
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M NA-CACODYLATE PH 6.5 16% PEG
REMARK 280 8000 20 % GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y,X,Z+1/4
REMARK 290 4555 Y,-X,Z+3/4
REMARK 290 5555 -X,Y,-Z
REMARK 290 6555 X,-Y,-Z+1/2
REMARK 290 7555 Y,X,-Z+3/4
REMARK 290 8555 -Y,-X,-Z+1/4
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.48250
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.74125
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.22375
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.48250
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.22375
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 12.74125
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ARG A 222
REMARK 465 ASP A 223
REMARK 465 ALA A 294
REMARK 465 GLY A 295
REMARK 465 GLY A 296
REMARK 465 GLY A 297
REMARK 465 LEU A 298
REMARK 465 PRO A 299
REMARK 465 GLY A 300
REMARK 465 GLY A 301
REMARK 465 ARG A 302
REMARK 465 ALA A 303
REMARK 465 GLY A 304
REMARK 465 GLY A 305
REMARK 465 GLU A 306
REMARK 465 GLU A 307
REMARK 465 GLU A 308
REMARK 465 GLY A 309
REMARK 465 TYR A 310
REMARK 465 GLY A 311
REMARK 465 GLY A 312
REMARK 465 ARG A 313
REMARK 465 HIS A 314
REMARK 465 GLU A 366
REMARK 465 ASP A 367
REMARK 465 SER A 368
REMARK 465 ALA A 369
REMARK 465 GLY A 370
REMARK 465 GLY A 371
REMARK 465 GLY A 372
REMARK 465 ASP A 373
REMARK 465 GLY A 374
REMARK 465 GLY A 375
REMARK 465 GLY A 376
REMARK 465 ALA A 377
REMARK 465 VAL A 378
REMARK 465 LEU A 379
REMARK 465 MET A 380
REMARK 465 GLN A 381
REMARK 465 LEU A 382
REMARK 465 SER A 383
REMARK 465 LYS A 384
REMARK 465 ALA A 466
REMARK 465 ALA A 467
REMARK 465 ALA A 468
REMARK 465 LEU A 469
REMARK 465 GLU A 470
REMARK 465 HIS A 471
REMARK 465 HIS A 472
REMARK 465 HIS A 473
REMARK 465 HIS A 474
REMARK 465 HIS A 475
REMARK 465 HIS A 476
REMARK 465 HIS A 477
REMARK 465 HIS A 478
REMARK 465 HIS A 479
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 HIS A 18 -68.09 -95.38
REMARK 500 GLN A 65 73.71 61.89
REMARK 500 PRO A 90 34.49 -87.14
REMARK 500 ASP A 241 46.26 -84.60
REMARK 500 GLU A 248 78.06 -114.79
REMARK 500 TYR A 327 -66.00 -133.91
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502
DBREF1 7NXP A 2 464 UNP A0A3G6XKK5_HCMV
DBREF2 7NXP A A0A3G6XKK5 180 642
SEQADV 7NXP MET A 1 UNP A0A3G6XKK INITIATING METHIONINE
SEQADV 7NXP PRO A 465 UNP A0A3G6XKK EXPRESSION TAG
SEQADV 7NXP ALA A 466 UNP A0A3G6XKK EXPRESSION TAG
SEQADV 7NXP ALA A 467 UNP A0A3G6XKK EXPRESSION TAG
SEQADV 7NXP ALA A 468 UNP A0A3G6XKK EXPRESSION TAG
SEQADV 7NXP LEU A 469 UNP A0A3G6XKK EXPRESSION TAG
SEQADV 7NXP GLU A 470 UNP A0A3G6XKK EXPRESSION TAG
SEQADV 7NXP HIS A 471 UNP A0A3G6XKK EXPRESSION TAG
SEQADV 7NXP HIS A 472 UNP A0A3G6XKK EXPRESSION TAG
SEQADV 7NXP HIS A 473 UNP A0A3G6XKK EXPRESSION TAG
SEQADV 7NXP HIS A 474 UNP A0A3G6XKK EXPRESSION TAG
SEQADV 7NXP HIS A 475 UNP A0A3G6XKK EXPRESSION TAG
SEQADV 7NXP HIS A 476 UNP A0A3G6XKK EXPRESSION TAG
SEQADV 7NXP HIS A 477 UNP A0A3G6XKK EXPRESSION TAG
SEQADV 7NXP HIS A 478 UNP A0A3G6XKK EXPRESSION TAG
SEQADV 7NXP HIS A 479 UNP A0A3G6XKK EXPRESSION TAG
SEQRES 1 A 479 MET VAL PRO SER TYR PHE GLY ILE THR GLN ASN ASP PRO
SEQRES 2 A 479 PHE ILE ARG PHE HIS THR ASP PHE ARG GLY GLU VAL VAL
SEQRES 3 A 479 ASN THR MET PHE GLU ASN ALA SER THR TRP THR PHE SER
SEQRES 4 A 479 PHE GLY ILE TRP TYR TYR ARG LEU LYS ARG GLY LEU TYR
SEQRES 5 A 479 THR GLN PRO ARG TRP LYS ARG VAL TYR HIS LEU ALA GLN
SEQRES 6 A 479 MET ASP ASN PHE SER ILE SER GLN GLU LEU LEU LEU GLY
SEQRES 7 A 479 VAL VAL ASN ALA LEU GLU ASN VAL THR VAL TYR PRO THR
SEQRES 8 A 479 TYR ASP CYS VAL LEU SER ASP LEU GLU ALA ALA ALA CYS
SEQRES 9 A 479 LEU LEU ALA ALA TYR GLY HIS ALA LEU TRP GLU GLY ARG
SEQRES 10 A 479 ASP PRO PRO ASP SER VAL ALA THR VAL LEU GLY GLU LEU
SEQRES 11 A 479 PRO GLN LEU LEU PRO ARG LEU ALA ASP ASP VAL SER ARG
SEQRES 12 A 479 GLU ILE ALA ALA TRP GLU GLY PRO VAL ALA ALA GLY ASN
SEQRES 13 A 479 ASN TYR TYR ALA TYR ARG ASP SER PRO ASP LEU ARG TYR
SEQRES 14 A 479 TYR MET PRO LEU SER GLY GLY ARG HIS TYR HIS PRO GLY
SEQRES 15 A 479 THR PHE ASP ARG HIS VAL LEU VAL ARG LEU PHE HIS LYS
SEQRES 16 A 479 ARG GLY VAL ILE GLN HIS LEU PRO GLY TYR GLY THR ILE
SEQRES 17 A 479 THR GLU GLU LEU VAL GLN GLU ARG LEU SER GLY GLN VAL
SEQRES 18 A 479 ARG ASP ASP VAL LEU SER LEU TRP SER ARG ARG LEU LEU
SEQRES 19 A 479 VAL GLY LYS LEU GLY ARG ASP VAL PRO VAL PHE VAL HIS
SEQRES 20 A 479 GLU GLN GLN TYR LEU ARG SER GLY LEU THR CYS LEU ALA
SEQRES 21 A 479 GLY LEU LEU LEU LEU TRP LYS VAL THR ASN ALA ASP SER
SEQRES 22 A 479 VAL PHE ALA PRO ARG THR GLY LYS PHE THR LEU ALA ASP
SEQRES 23 A 479 LEU LEU GLY SER ASP ALA VAL ALA GLY GLY GLY LEU PRO
SEQRES 24 A 479 GLY GLY ARG ALA GLY GLY GLU GLU GLU GLY TYR GLY GLY
SEQRES 25 A 479 ARG HIS GLY ARG VAL ARG ASN PHE GLU PHE LEU VAL ARG
SEQRES 26 A 479 TYR TYR ILE GLY PRO TRP TYR ALA ARG ASP PRO ALA VAL
SEQRES 27 A 479 THR LEU SER GLN LEU PHE PRO GLY LEU ALA LEU LEU ALA
SEQRES 28 A 479 VAL THR GLU SER VAL ARG SER GLY TRP ASP PRO SER ARG
SEQRES 29 A 479 ARG GLU ASP SER ALA GLY GLY GLY ASP GLY GLY GLY ALA
SEQRES 30 A 479 VAL LEU MET GLN LEU SER LYS SER ASN PRO VAL ALA ASP
SEQRES 31 A 479 TYR MET PHE ALA GLN SER SER LYS GLN TYR GLY ASP LEU
SEQRES 32 A 479 ARG ARG LEU GLU VAL HIS ASP ALA LEU LEU PHE HIS TYR
SEQRES 33 A 479 GLU HIS GLY LEU GLY ARG LEU LEU SER VAL THR LEU PRO
SEQRES 34 A 479 ARG HIS ARG VAL SER THR LEU GLY SER SER LEU PHE ASN
SEQRES 35 A 479 VAL ASN ASP ILE TYR GLU LEU LEU TYR PHE LEU VAL LEU
SEQRES 36 A 479 GLY PHE LEU PRO SER VAL ALA VAL LEU PRO ALA ALA ALA
SEQRES 37 A 479 LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS HIS
HET GOL A 501 6
HET GOL A 502 6
HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 GOL 2(C3 H8 O3)
FORMUL 4 HOH *184(H2 O)
HELIX 1 AA1 ASP A 20 ALA A 33 1 14
HELIX 2 AA2 SER A 34 TRP A 36 5 3
HELIX 3 AA3 GLY A 41 THR A 53 1 13
HELIX 4 AA4 GLN A 54 TYR A 61 1 8
HELIX 5 AA5 SER A 72 ASN A 85 1 14
HELIX 6 AA6 SER A 97 LEU A 113 1 17
HELIX 7 AA7 SER A 122 GLU A 129 1 8
HELIX 8 AA8 GLU A 129 ALA A 147 1 19
HELIX 9 AA9 HIS A 187 ARG A 196 1 10
HELIX 10 AB1 THR A 209 GLY A 219 1 11
HELIX 11 AB2 VAL A 225 GLY A 239 1 15
HELIX 12 AB3 GLU A 248 ASN A 270 1 23
HELIX 13 AB4 THR A 283 GLY A 289 1 7
HELIX 14 AB5 ARG A 318 TYR A 327 1 10
HELIX 15 AB6 TYR A 327 ASP A 335 1 9
HELIX 16 AB7 THR A 339 PHE A 344 1 6
HELIX 17 AB8 PHE A 344 SER A 358 1 15
HELIX 18 AB9 ASN A 386 SER A 397 1 12
HELIX 19 AC1 GLY A 401 VAL A 426 1 26
HELIX 20 AC2 LEU A 428 PHE A 441 1 14
HELIX 21 AC3 ASP A 445 GLY A 456 1 12
SHEET 1 AA1 2 SER A 4 PHE A 6 0
SHEET 2 AA1 2 ILE A 15 PHE A 17 -1 O ILE A 15 N PHE A 6
SHEET 1 AA2 2 PHE A 38 SER A 39 0
SHEET 2 AA2 2 SER A 460 VAL A 461 -1 O SER A 460 N SER A 39
SITE 1 AC1 9 ASP A 121 SER A 122 VAL A 123 ALA A 124
SITE 2 AC1 9 LEU A 233 GLY A 236 LYS A 237 TYR A 332
SITE 3 AC1 9 HOH A 701
SITE 1 AC2 7 SER A 273 VAL A 274 ARG A 316 ARG A 318
SITE 2 AC2 7 ASN A 319 HOH A 611 HOH A 643
CRYST1 163.907 163.907 50.965 90.00 90.00 90.00 P 41 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006101 0.000000 0.000000 0.00000
SCALE2 0.000000 0.006101 0.000000 0.00000
SCALE3 0.000000 0.000000 0.019621 0.00000