HEADER TRANSPORT PROTEIN 22-MAR-21 7NYJ TITLE STRUCTURE OF OBP1 FROM VARROA DESTRUCTOR, FORM P3<2>21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ODORANT BINDING PROTEIN 1 FROM VAROA DESTRUCTOR, FORM COMPND 3 P3<2>21; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VARROA DESTRUCTOR; SOURCE 3 ORGANISM_TAXID: 109461; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ODORANT BINDING PROTEIN, VARROA, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CAMBILLAU,B.AMIGUES,A.ROUSSEL,P.LEONE,A.GAUBERT,P.PELOSI REVDAT 1 07-JUL-21 7NYJ 0 JRNL AUTH B.AMIGUES,J.ZHU,A.GAUBERT,S.ARENA,G.RENZONE,P.LEONE, JRNL AUTH 2 I.M.FISCHER,H.PAULSEN,W.KNOLL,A.SCALONI,A.ROUSSEL, JRNL AUTH 3 C.CAMBILLAU,P.PELOSI JRNL TITL A NEW NON-CLASSICAL FOLD OF VARROA ODORANT-BINDING PROTEINS JRNL TITL 2 REVEALS A WIDE OPEN INTERNAL CAVITY. JRNL REF SCI REP V. 11 13172 2021 JRNL REFN ESSN 2045-2322 JRNL PMID 34162975 JRNL DOI 10.1038/S41598-021-92604-2 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 728 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1009 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1035 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.418 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1065 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 956 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1443 ; 1.829 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2227 ; 1.528 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 132 ; 6.012 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;37.214 ;24.808 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 189 ;14.459 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 8.860 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 142 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1176 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 192 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 534 ; 2.676 ; 3.483 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 533 ; 2.621 ; 3.477 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 664 ; 3.745 ; 5.180 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 665 ; 3.746 ; 5.186 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 527 ; 3.916 ; 3.802 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 519 ; 3.654 ; 3.767 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 761 ; 5.534 ; 5.527 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1237 ; 7.774 ;42.717 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1215 ; 7.556 ;42.289 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): -17.035 -20.901 0.336 REMARK 3 T TENSOR REMARK 3 T11: 0.0600 T22: 0.0760 REMARK 3 T33: 0.0417 T12: 0.0102 REMARK 3 T13: -0.0071 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 4.6874 L22: 0.1631 REMARK 3 L33: 3.8727 L12: -0.3591 REMARK 3 L13: 3.1284 L23: -0.7181 REMARK 3 S TENSOR REMARK 3 S11: -0.1125 S12: 0.0069 S13: 0.1108 REMARK 3 S21: 0.0383 S22: 0.0089 S23: -0.0061 REMARK 3 S31: -0.2201 S32: 0.0535 S33: 0.1035 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): -13.155 -29.611 -6.423 REMARK 3 T TENSOR REMARK 3 T11: 0.0378 T22: 0.0766 REMARK 3 T33: 0.0509 T12: 0.0323 REMARK 3 T13: -0.0080 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 2.2552 L22: 0.4528 REMARK 3 L33: 0.7747 L12: -0.7778 REMARK 3 L13: 0.7623 L23: -0.5674 REMARK 3 S TENSOR REMARK 3 S11: 0.0869 S12: 0.1140 S13: 0.0291 REMARK 3 S21: 0.0093 S22: -0.0032 S23: 0.0357 REMARK 3 S31: -0.0275 S32: 0.0097 S33: -0.0837 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 4.880 -21.637 -5.147 REMARK 3 T TENSOR REMARK 3 T11: 0.0171 T22: 0.1135 REMARK 3 T33: 0.0899 T12: 0.0007 REMARK 3 T13: -0.0334 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 3.4967 L22: 5.5090 REMARK 3 L33: 1.5094 L12: 4.3228 REMARK 3 L13: 0.3922 L23: -0.0068 REMARK 3 S TENSOR REMARK 3 S11: 0.1452 S12: -0.0508 S13: -0.1387 REMARK 3 S21: 0.2019 S22: -0.1887 S23: -0.1992 REMARK 3 S31: 0.0096 S32: 0.3260 S33: 0.0435 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 1.253 -9.330 -6.336 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.0641 REMARK 3 T33: 0.1247 T12: -0.0304 REMARK 3 T13: 0.0189 T23: -0.0530 REMARK 3 L TENSOR REMARK 3 L11: 0.8026 L22: 2.0716 REMARK 3 L33: 5.9998 L12: 0.5255 REMARK 3 L13: -0.5668 L23: 2.4284 REMARK 3 S TENSOR REMARK 3 S11: 0.2973 S12: -0.1004 S13: 0.0417 REMARK 3 S21: -0.0226 S22: -0.2404 S23: 0.0344 REMARK 3 S31: -0.3972 S32: -0.3308 S33: -0.0568 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): -0.461 -23.561 -17.595 REMARK 3 T TENSOR REMARK 3 T11: 0.0436 T22: 0.0338 REMARK 3 T33: 0.1589 T12: 0.0216 REMARK 3 T13: 0.0459 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 3.6203 L22: 1.5509 REMARK 3 L33: 2.8116 L12: 0.2201 REMARK 3 L13: 2.2777 L23: -1.3136 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: -0.0191 S13: -0.1759 REMARK 3 S21: -0.1345 S22: -0.0413 S23: -0.2367 REMARK 3 S31: 0.0947 S32: 0.0273 S33: 0.0741 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): -12.231 -26.658 -21.164 REMARK 3 T TENSOR REMARK 3 T11: 0.0978 T22: 0.0194 REMARK 3 T33: 0.0521 T12: 0.0179 REMARK 3 T13: 0.0147 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.8742 L22: 2.0376 REMARK 3 L33: 0.8569 L12: 0.5687 REMARK 3 L13: -0.6152 L23: -0.0342 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: 0.0728 S13: -0.0226 REMARK 3 S21: -0.2793 S22: 0.0396 S23: -0.0353 REMARK 3 S31: 0.0887 S32: 0.0026 S33: -0.0676 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): -24.078 -23.456 -18.195 REMARK 3 T TENSOR REMARK 3 T11: 0.0531 T22: 0.0584 REMARK 3 T33: 0.0625 T12: 0.0041 REMARK 3 T13: -0.0346 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.8674 L22: 3.5474 REMARK 3 L33: 3.6643 L12: 0.6617 REMARK 3 L13: -1.6236 L23: -2.3950 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: 0.0693 S13: 0.0384 REMARK 3 S21: -0.1434 S22: 0.1326 S23: 0.1113 REMARK 3 S31: -0.0320 S32: -0.2572 S33: -0.1803 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): -9.015 -12.715 -25.503 REMARK 3 T TENSOR REMARK 3 T11: 0.1014 T22: 0.0205 REMARK 3 T33: 0.0808 T12: -0.0121 REMARK 3 T13: 0.0378 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 4.5973 L22: 0.8541 REMARK 3 L33: 1.4566 L12: 0.7202 REMARK 3 L13: 0.2854 L23: -0.0143 REMARK 3 S TENSOR REMARK 3 S11: -0.2493 S12: 0.0500 S13: 0.2292 REMARK 3 S21: -0.2753 S22: 0.0761 S23: -0.0712 REMARK 3 S31: -0.0313 S32: 0.0120 S33: 0.1733 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): -11.247 -14.413 -17.321 REMARK 3 T TENSOR REMARK 3 T11: 0.0615 T22: 0.0258 REMARK 3 T33: 0.0518 T12: 0.0208 REMARK 3 T13: -0.0073 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.7382 L22: 2.6670 REMARK 3 L33: 2.2025 L12: -0.7690 REMARK 3 L13: -1.8453 L23: -0.6736 REMARK 3 S TENSOR REMARK 3 S11: -0.0727 S12: -0.1700 S13: 0.0988 REMARK 3 S21: 0.0143 S22: 0.0355 S23: -0.2064 REMARK 3 S31: -0.0010 S32: 0.0656 S33: 0.0373 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): -20.194 -16.192 -5.936 REMARK 3 T TENSOR REMARK 3 T11: 0.0902 T22: 0.0624 REMARK 3 T33: 0.0586 T12: 0.0248 REMARK 3 T13: 0.0384 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.8226 L22: 1.9545 REMARK 3 L33: 3.6701 L12: 0.3012 REMARK 3 L13: 0.7837 L23: -1.9739 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: -0.0819 S13: 0.0460 REMARK 3 S21: 0.0043 S22: 0.0631 S23: 0.0488 REMARK 3 S31: -0.1612 S32: -0.1814 S33: -0.0435 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7NYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114804. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 - 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13957 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.07950 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.00 REMARK 200 R MERGE FOR SHELL (I) : 1.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2/3 OF THE INITIAL CONDITION (0.2M REMARK 280 CADMIUM CHLORIDE, 2.2 AMMONIUM SULFATE) + 1/3 OF PEG II SCREEN REMARK 280 (0.2M CALCIUM CHLORIDE, HEPES 0.1M PH 7,5; PEG 4000 30% W/V)., REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.11333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.55667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.55667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.11333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 GLN A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 PRO A 50 REMARK 465 GLU A 51 REMARK 465 LYS A 52 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 12 CD CE NZ REMARK 470 LYS A 40 CE NZ REMARK 470 LEU A 47 CG CD1 CD2 REMARK 470 ASP A 49 CG OD1 OD2 REMARK 470 GLN A 55 CG CD OE1 NE2 REMARK 470 GLN A 56 CG CD OE1 NE2 REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 LYS A 95 CD CE NZ REMARK 470 GLU A 99 CD OE1 OE2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 17 OE1 REMARK 620 2 GLU A 17 OE2 54.3 REMARK 620 3 GLU A 28 OE1 104.4 114.6 REMARK 620 4 GLU A 28 OE2 101.1 109.2 5.4 REMARK 620 5 HOH A 323 O 143.4 89.8 97.1 97.7 REMARK 620 6 HOH A 332 O 76.7 71.5 173.4 176.9 85.4 REMARK 620 7 HOH A 381 O 93.1 94.8 19.8 14.4 97.8 165.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 22 OE1 REMARK 620 2 GLU A 22 OE2 56.8 REMARK 620 3 GLU A 28 OE1 46.8 103.4 REMARK 620 4 GLU A 117 OE1 39.8 17.7 86.0 REMARK 620 5 GLU A 117 OE2 39.4 17.4 86.0 3.4 REMARK 620 6 HOH A 314 O 46.7 10.8 93.0 7.0 7.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 205 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 57 OE2 REMARK 620 2 ASP A 121 OD2 131.5 REMARK 620 3 HOH A 391 O 140.7 11.8 REMARK 620 N 1 2 DBREF 7NYJ A 1 147 PDB 7NYJ 7NYJ 1 147 SEQRES 1 A 147 ALA PRO GLN ALA PRO ALA SER ALA THR PRO ALA LYS VAL SEQRES 2 A 147 PRO VAL ILE GLU TRP GLY LYS CYS GLU GLN LEU LYS PRO SEQRES 3 A 147 SER GLU SER GLU ARG THR SER LYS ALA ALA VAL VAL ASP SEQRES 4 A 147 LYS CYS LEU GLN SER LEU PRO LEU PRO ASP PRO GLU LYS SEQRES 5 A 147 ALA THR GLN GLN GLU ILE ASP LYS HIS ARG GLU SER VAL SEQRES 6 A 147 THR THR CYS ALA LEU LYS ALA GLU GLY TRP PHE ASP ASP SEQRES 7 A 147 GLU GLY VAL TYR LYS PHE ASP ARG ALA ARG ASN GLU ILE SEQRES 8 A 147 LYS ASN LYS LYS LEU ASP SER GLU VAL GLU GLU ALA VAL SEQRES 9 A 147 LEU LEU LYS HIS ASP ALA CYS GLN LYS GLU ALA THR GLU SEQRES 10 A 147 LYS HIS ASP ASP TYR ILE ASN GLN VAL GLN LEU TYR GLN SEQRES 11 A 147 ALA CYS MET ASP TYR ASN ILE SER GLN ILE CYS GLY ILE SEQRES 12 A 147 LYS VAL MET VAL HET SO4 A 201 5 HET SO4 A 202 5 HET CA A 203 1 HET CA A 204 1 HET NA A 205 1 HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 CA 2(CA 2+) FORMUL 6 NA NA 1+ FORMUL 7 HOH *99(H2 O) HELIX 1 AA1 CYS A 21 LYS A 25 5 5 HELIX 2 AA2 SER A 27 LEU A 45 1 19 HELIX 3 AA3 THR A 54 GLU A 73 1 20 HELIX 4 AA4 LYS A 83 LYS A 94 1 12 HELIX 5 AA5 ASP A 97 HIS A 119 1 23 HELIX 6 AA6 ASP A 121 GLY A 142 1 22 SHEET 1 AA1 2 VAL A 15 GLU A 17 0 SHEET 2 AA1 2 LYS A 144 MET A 146 -1 O LYS A 144 N GLU A 17 SSBOND 1 CYS A 21 CYS A 141 1555 1555 1.98 SSBOND 2 CYS A 41 CYS A 68 1555 1555 2.22 SSBOND 3 CYS A 111 CYS A 132 1555 1555 2.19 LINK OE1 GLU A 17 CA CA A 204 1555 1555 2.42 LINK OE2 GLU A 17 CA CA A 204 1555 1555 2.27 LINK OE1 GLU A 22 CA CA A 203 1555 3445 2.36 LINK OE2 GLU A 22 CA CA A 203 1555 3445 2.34 LINK OE1 GLU A 28 CA CA A 203 1555 6444 2.20 LINK OE1 GLU A 28 CA CA A 204 1555 4555 3.01 LINK OE2 GLU A 28 CA CA A 204 1555 4555 2.21 LINK OE2 GLU A 57 NA NA A 205 1555 6554 2.64 LINK OE1 GLU A 117 CA CA A 203 1555 1555 2.33 LINK OE2 GLU A 117 CA CA A 203 1555 1555 2.51 LINK OD2 ASP A 121 NA NA A 205 1555 1555 1.95 LINK CA CA A 203 O HOH A 314 1555 2454 2.77 LINK CA CA A 204 O HOH A 323 1555 1555 2.21 LINK CA CA A 204 O HOH A 332 1555 3445 2.71 LINK CA CA A 204 O HOH A 381 1555 1555 2.55 LINK NA NA A 205 O HOH A 391 1555 6554 2.59 CRYST1 53.800 53.800 91.670 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018587 0.010731 0.000000 0.00000 SCALE2 0.000000 0.021463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010909 0.00000