HEADER RNA BINDING PROTEIN 24-MAR-21 7NZJ TITLE STRUCTURE OF BSTRMB APO COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: BSTRMB,TRNA (GUANINE(46)-N(7))-METHYLTRANSFERASE, COMPND 5 TRNA(M7G46)-METHYLTRANSFERASE; COMPND 6 EC: 2.1.1.33; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: TRMB, YTMQ, BSU29900; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS M7G METHYLTRANSFERASE, ROSSMAN-LIKE FOLD, TRNA MODIFYING ENZYME, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.F.BLERSCH,R.FICNER,P.NEUMANN REVDAT 3 31-JAN-24 7NZJ 1 REMARK REVDAT 2 01-DEC-21 7NZJ 1 JRNL REVDAT 1 15-SEP-21 7NZJ 0 JRNL AUTH K.F.BLERSCH,J.P.BURCHERT,S.C.AUGUST,L.WELP,P.NEUMANN, JRNL AUTH 2 S.KOSTER,H.URLAUB,R.FICNER JRNL TITL STRUCTURAL MODEL OF THE M7G46 METHYLTRANSFERASE TRMB IN JRNL TITL 2 COMPLEX WITH TRNA. JRNL REF RNA BIOL. V. 18 2466 2021 JRNL REFN ESSN 1555-8584 JRNL PMID 34006170 JRNL DOI 10.1080/15476286.2021.1925477 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 91357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 5048 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6866 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 315 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9925 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 912 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.71000 REMARK 3 B22 (A**2) : -1.71000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : -0.47000 REMARK 3 B13 (A**2) : -0.36000 REMARK 3 B23 (A**2) : 0.31000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.500 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10182 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 9503 ; 0.035 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13749 ; 1.321 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 21941 ; 2.232 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1222 ; 6.217 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 552 ;37.096 ;23.768 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1788 ;12.695 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;15.953 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1276 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11572 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2368 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7NZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96395 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 44.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 3.861 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 1.34400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2FCA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 0.1M MES, 15% V/V REMARK 280 5/4PO/OH,, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 MET A 3 REMARK 465 ARG A 4 REMARK 465 HIS A 5 REMARK 465 LYS A 6 REMARK 465 PRO A 7 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 MET B 3 REMARK 465 ARG B 4 REMARK 465 HIS B 5 REMARK 465 LYS B 6 REMARK 465 PRO B 7 REMARK 465 TRP B 8 REMARK 465 ALA B 9 REMARK 465 ASP B 10 REMARK 465 MET C 1 REMARK 465 ARG C 2 REMARK 465 MET C 3 REMARK 465 ARG C 4 REMARK 465 HIS C 5 REMARK 465 LYS C 6 REMARK 465 PRO C 7 REMARK 465 TRP C 8 REMARK 465 MET D 1 REMARK 465 ARG D 2 REMARK 465 MET D 3 REMARK 465 ARG D 4 REMARK 465 HIS D 5 REMARK 465 LYS D 6 REMARK 465 PRO D 7 REMARK 465 TRP D 8 REMARK 465 ALA D 9 REMARK 465 ASP D 10 REMARK 465 MET E 1 REMARK 465 ARG E 2 REMARK 465 MET E 3 REMARK 465 ARG E 4 REMARK 465 HIS E 5 REMARK 465 LYS E 6 REMARK 465 PRO E 7 REMARK 465 MET F 1 REMARK 465 ARG F 2 REMARK 465 MET F 3 REMARK 465 ARG F 4 REMARK 465 HIS F 5 REMARK 465 LYS F 6 REMARK 465 PRO F 7 REMARK 465 TRP F 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 200 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 48.44 -109.32 REMARK 500 ASP A 179 74.25 -164.85 REMARK 500 LYS B 30 33.72 -140.87 REMARK 500 ASP B 179 79.16 -156.51 REMARK 500 TRP C 120 61.83 39.27 REMARK 500 ASP C 179 69.41 -167.34 REMARK 500 TRP D 120 62.60 36.89 REMARK 500 ASP D 179 76.03 -164.99 REMARK 500 LEU D 200 56.25 -91.83 REMARK 500 ASP E 10 -16.55 76.76 REMARK 500 ASP E 179 76.48 -163.82 REMARK 500 PHE F 71 96.01 -67.80 REMARK 500 TRP F 120 61.58 39.76 REMARK 500 ASP F 179 72.89 -164.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH F 465 DISTANCE = 6.68 ANGSTROMS DBREF 7NZJ A 1 213 UNP O34522 TRMB_BACSU 1 213 DBREF 7NZJ B 1 213 UNP O34522 TRMB_BACSU 1 213 DBREF 7NZJ C 1 213 UNP O34522 TRMB_BACSU 1 213 DBREF 7NZJ D 1 213 UNP O34522 TRMB_BACSU 1 213 DBREF 7NZJ E 1 213 UNP O34522 TRMB_BACSU 1 213 DBREF 7NZJ F 1 213 UNP O34522 TRMB_BACSU 1 213 SEQRES 1 A 213 MET ARG MET ARG HIS LYS PRO TRP ALA ASP ASP PHE LEU SEQRES 2 A 213 ALA GLU ASN ALA ASP ILE ALA ILE SER ASN PRO ALA ASP SEQRES 3 A 213 TYR LYS GLY LYS TRP ASN THR VAL PHE GLY ASN ASP ASN SEQRES 4 A 213 PRO ILE HIS ILE GLU VAL GLY THR GLY LYS GLY GLN PHE SEQRES 5 A 213 ILE SER GLY MET ALA LYS GLN ASN PRO ASP ILE ASN TYR SEQRES 6 A 213 ILE GLY ILE GLU LEU PHE LYS SER VAL ILE VAL THR ALA SEQRES 7 A 213 VAL GLN LYS VAL LYS ASP SER GLU ALA GLN ASN VAL LYS SEQRES 8 A 213 LEU LEU ASN ILE ASP ALA ASP THR LEU THR ASP VAL PHE SEQRES 9 A 213 GLU PRO GLY GLU VAL LYS ARG VAL TYR LEU ASN PHE SER SEQRES 10 A 213 ASP PRO TRP PRO LYS LYS ARG HIS GLU LYS ARG ARG LEU SEQRES 11 A 213 THR TYR SER HIS PHE LEU LYS LYS TYR GLU GLU VAL MET SEQRES 12 A 213 GLY LYS GLY GLY SER ILE HIS PHE LYS THR ASP ASN ARG SEQRES 13 A 213 GLY LEU PHE GLU TYR SER LEU LYS SER PHE SER GLU TYR SEQRES 14 A 213 GLY LEU LEU LEU THR TYR VAL SER LEU ASP LEU HIS ASN SEQRES 15 A 213 SER ASN LEU GLU GLY ASN ILE MET THR GLU TYR GLU GLU SEQRES 16 A 213 LYS PHE SER ALA LEU GLY GLN PRO ILE TYR ARG ALA GLU SEQRES 17 A 213 VAL GLU TRP ARG THR SEQRES 1 B 213 MET ARG MET ARG HIS LYS PRO TRP ALA ASP ASP PHE LEU SEQRES 2 B 213 ALA GLU ASN ALA ASP ILE ALA ILE SER ASN PRO ALA ASP SEQRES 3 B 213 TYR LYS GLY LYS TRP ASN THR VAL PHE GLY ASN ASP ASN SEQRES 4 B 213 PRO ILE HIS ILE GLU VAL GLY THR GLY LYS GLY GLN PHE SEQRES 5 B 213 ILE SER GLY MET ALA LYS GLN ASN PRO ASP ILE ASN TYR SEQRES 6 B 213 ILE GLY ILE GLU LEU PHE LYS SER VAL ILE VAL THR ALA SEQRES 7 B 213 VAL GLN LYS VAL LYS ASP SER GLU ALA GLN ASN VAL LYS SEQRES 8 B 213 LEU LEU ASN ILE ASP ALA ASP THR LEU THR ASP VAL PHE SEQRES 9 B 213 GLU PRO GLY GLU VAL LYS ARG VAL TYR LEU ASN PHE SER SEQRES 10 B 213 ASP PRO TRP PRO LYS LYS ARG HIS GLU LYS ARG ARG LEU SEQRES 11 B 213 THR TYR SER HIS PHE LEU LYS LYS TYR GLU GLU VAL MET SEQRES 12 B 213 GLY LYS GLY GLY SER ILE HIS PHE LYS THR ASP ASN ARG SEQRES 13 B 213 GLY LEU PHE GLU TYR SER LEU LYS SER PHE SER GLU TYR SEQRES 14 B 213 GLY LEU LEU LEU THR TYR VAL SER LEU ASP LEU HIS ASN SEQRES 15 B 213 SER ASN LEU GLU GLY ASN ILE MET THR GLU TYR GLU GLU SEQRES 16 B 213 LYS PHE SER ALA LEU GLY GLN PRO ILE TYR ARG ALA GLU SEQRES 17 B 213 VAL GLU TRP ARG THR SEQRES 1 C 213 MET ARG MET ARG HIS LYS PRO TRP ALA ASP ASP PHE LEU SEQRES 2 C 213 ALA GLU ASN ALA ASP ILE ALA ILE SER ASN PRO ALA ASP SEQRES 3 C 213 TYR LYS GLY LYS TRP ASN THR VAL PHE GLY ASN ASP ASN SEQRES 4 C 213 PRO ILE HIS ILE GLU VAL GLY THR GLY LYS GLY GLN PHE SEQRES 5 C 213 ILE SER GLY MET ALA LYS GLN ASN PRO ASP ILE ASN TYR SEQRES 6 C 213 ILE GLY ILE GLU LEU PHE LYS SER VAL ILE VAL THR ALA SEQRES 7 C 213 VAL GLN LYS VAL LYS ASP SER GLU ALA GLN ASN VAL LYS SEQRES 8 C 213 LEU LEU ASN ILE ASP ALA ASP THR LEU THR ASP VAL PHE SEQRES 9 C 213 GLU PRO GLY GLU VAL LYS ARG VAL TYR LEU ASN PHE SER SEQRES 10 C 213 ASP PRO TRP PRO LYS LYS ARG HIS GLU LYS ARG ARG LEU SEQRES 11 C 213 THR TYR SER HIS PHE LEU LYS LYS TYR GLU GLU VAL MET SEQRES 12 C 213 GLY LYS GLY GLY SER ILE HIS PHE LYS THR ASP ASN ARG SEQRES 13 C 213 GLY LEU PHE GLU TYR SER LEU LYS SER PHE SER GLU TYR SEQRES 14 C 213 GLY LEU LEU LEU THR TYR VAL SER LEU ASP LEU HIS ASN SEQRES 15 C 213 SER ASN LEU GLU GLY ASN ILE MET THR GLU TYR GLU GLU SEQRES 16 C 213 LYS PHE SER ALA LEU GLY GLN PRO ILE TYR ARG ALA GLU SEQRES 17 C 213 VAL GLU TRP ARG THR SEQRES 1 D 213 MET ARG MET ARG HIS LYS PRO TRP ALA ASP ASP PHE LEU SEQRES 2 D 213 ALA GLU ASN ALA ASP ILE ALA ILE SER ASN PRO ALA ASP SEQRES 3 D 213 TYR LYS GLY LYS TRP ASN THR VAL PHE GLY ASN ASP ASN SEQRES 4 D 213 PRO ILE HIS ILE GLU VAL GLY THR GLY LYS GLY GLN PHE SEQRES 5 D 213 ILE SER GLY MET ALA LYS GLN ASN PRO ASP ILE ASN TYR SEQRES 6 D 213 ILE GLY ILE GLU LEU PHE LYS SER VAL ILE VAL THR ALA SEQRES 7 D 213 VAL GLN LYS VAL LYS ASP SER GLU ALA GLN ASN VAL LYS SEQRES 8 D 213 LEU LEU ASN ILE ASP ALA ASP THR LEU THR ASP VAL PHE SEQRES 9 D 213 GLU PRO GLY GLU VAL LYS ARG VAL TYR LEU ASN PHE SER SEQRES 10 D 213 ASP PRO TRP PRO LYS LYS ARG HIS GLU LYS ARG ARG LEU SEQRES 11 D 213 THR TYR SER HIS PHE LEU LYS LYS TYR GLU GLU VAL MET SEQRES 12 D 213 GLY LYS GLY GLY SER ILE HIS PHE LYS THR ASP ASN ARG SEQRES 13 D 213 GLY LEU PHE GLU TYR SER LEU LYS SER PHE SER GLU TYR SEQRES 14 D 213 GLY LEU LEU LEU THR TYR VAL SER LEU ASP LEU HIS ASN SEQRES 15 D 213 SER ASN LEU GLU GLY ASN ILE MET THR GLU TYR GLU GLU SEQRES 16 D 213 LYS PHE SER ALA LEU GLY GLN PRO ILE TYR ARG ALA GLU SEQRES 17 D 213 VAL GLU TRP ARG THR SEQRES 1 E 213 MET ARG MET ARG HIS LYS PRO TRP ALA ASP ASP PHE LEU SEQRES 2 E 213 ALA GLU ASN ALA ASP ILE ALA ILE SER ASN PRO ALA ASP SEQRES 3 E 213 TYR LYS GLY LYS TRP ASN THR VAL PHE GLY ASN ASP ASN SEQRES 4 E 213 PRO ILE HIS ILE GLU VAL GLY THR GLY LYS GLY GLN PHE SEQRES 5 E 213 ILE SER GLY MET ALA LYS GLN ASN PRO ASP ILE ASN TYR SEQRES 6 E 213 ILE GLY ILE GLU LEU PHE LYS SER VAL ILE VAL THR ALA SEQRES 7 E 213 VAL GLN LYS VAL LYS ASP SER GLU ALA GLN ASN VAL LYS SEQRES 8 E 213 LEU LEU ASN ILE ASP ALA ASP THR LEU THR ASP VAL PHE SEQRES 9 E 213 GLU PRO GLY GLU VAL LYS ARG VAL TYR LEU ASN PHE SER SEQRES 10 E 213 ASP PRO TRP PRO LYS LYS ARG HIS GLU LYS ARG ARG LEU SEQRES 11 E 213 THR TYR SER HIS PHE LEU LYS LYS TYR GLU GLU VAL MET SEQRES 12 E 213 GLY LYS GLY GLY SER ILE HIS PHE LYS THR ASP ASN ARG SEQRES 13 E 213 GLY LEU PHE GLU TYR SER LEU LYS SER PHE SER GLU TYR SEQRES 14 E 213 GLY LEU LEU LEU THR TYR VAL SER LEU ASP LEU HIS ASN SEQRES 15 E 213 SER ASN LEU GLU GLY ASN ILE MET THR GLU TYR GLU GLU SEQRES 16 E 213 LYS PHE SER ALA LEU GLY GLN PRO ILE TYR ARG ALA GLU SEQRES 17 E 213 VAL GLU TRP ARG THR SEQRES 1 F 213 MET ARG MET ARG HIS LYS PRO TRP ALA ASP ASP PHE LEU SEQRES 2 F 213 ALA GLU ASN ALA ASP ILE ALA ILE SER ASN PRO ALA ASP SEQRES 3 F 213 TYR LYS GLY LYS TRP ASN THR VAL PHE GLY ASN ASP ASN SEQRES 4 F 213 PRO ILE HIS ILE GLU VAL GLY THR GLY LYS GLY GLN PHE SEQRES 5 F 213 ILE SER GLY MET ALA LYS GLN ASN PRO ASP ILE ASN TYR SEQRES 6 F 213 ILE GLY ILE GLU LEU PHE LYS SER VAL ILE VAL THR ALA SEQRES 7 F 213 VAL GLN LYS VAL LYS ASP SER GLU ALA GLN ASN VAL LYS SEQRES 8 F 213 LEU LEU ASN ILE ASP ALA ASP THR LEU THR ASP VAL PHE SEQRES 9 F 213 GLU PRO GLY GLU VAL LYS ARG VAL TYR LEU ASN PHE SER SEQRES 10 F 213 ASP PRO TRP PRO LYS LYS ARG HIS GLU LYS ARG ARG LEU SEQRES 11 F 213 THR TYR SER HIS PHE LEU LYS LYS TYR GLU GLU VAL MET SEQRES 12 F 213 GLY LYS GLY GLY SER ILE HIS PHE LYS THR ASP ASN ARG SEQRES 13 F 213 GLY LEU PHE GLU TYR SER LEU LYS SER PHE SER GLU TYR SEQRES 14 F 213 GLY LEU LEU LEU THR TYR VAL SER LEU ASP LEU HIS ASN SEQRES 15 F 213 SER ASN LEU GLU GLY ASN ILE MET THR GLU TYR GLU GLU SEQRES 16 F 213 LYS PHE SER ALA LEU GLY GLN PRO ILE TYR ARG ALA GLU SEQRES 17 F 213 VAL GLU TRP ARG THR HET NA A 301 1 HET GOL B 501 6 HET GOL C 301 6 HET GOL D 401 6 HET GOL D 402 6 HET GOL E 401 6 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 NA NA 1+ FORMUL 8 GOL 5(C3 H8 O3) FORMUL 13 HOH *912(H2 O) HELIX 1 AA1 TRP A 8 ASN A 16 1 9 HELIX 2 AA2 ASN A 23 LYS A 28 5 6 HELIX 3 AA3 LYS A 30 GLY A 36 1 7 HELIX 4 AA4 GLY A 50 ASN A 60 1 11 HELIX 5 AA5 PHE A 71 GLU A 86 1 16 HELIX 6 AA6 ASP A 96 ASP A 98 5 3 HELIX 7 AA7 THR A 99 PHE A 104 1 6 HELIX 8 AA8 LYS A 122 ARG A 129 5 8 HELIX 9 AA9 TYR A 132 GLY A 144 1 13 HELIX 10 AB1 ASN A 155 GLY A 170 1 16 HELIX 11 AB2 ASP A 179 SER A 183 5 5 HELIX 12 AB3 THR A 191 LYS A 196 1 6 HELIX 13 AB4 LEU B 13 ALA B 17 5 5 HELIX 14 AB5 ASN B 23 LYS B 28 5 6 HELIX 15 AB6 LYS B 30 GLY B 36 1 7 HELIX 16 AB7 GLY B 50 ASN B 60 1 11 HELIX 17 AB8 PHE B 71 GLU B 86 1 16 HELIX 18 AB9 ASP B 96 ASP B 98 5 3 HELIX 19 AC1 THR B 99 PHE B 104 1 6 HELIX 20 AC2 LYS B 122 ARG B 129 5 8 HELIX 21 AC3 TYR B 132 GLY B 144 1 13 HELIX 22 AC4 ASN B 155 GLY B 170 1 16 HELIX 23 AC5 ASP B 179 SER B 183 5 5 HELIX 24 AC6 THR B 191 PHE B 197 1 7 HELIX 25 AC7 ASP C 10 ASN C 16 1 7 HELIX 26 AC8 ASN C 23 LYS C 28 5 6 HELIX 27 AC9 LYS C 30 GLY C 36 1 7 HELIX 28 AD1 GLY C 50 ASN C 60 1 11 HELIX 29 AD2 PHE C 71 GLU C 86 1 16 HELIX 30 AD3 ASP C 96 ASP C 98 5 3 HELIX 31 AD4 THR C 99 PHE C 104 1 6 HELIX 32 AD5 LYS C 122 ARG C 129 5 8 HELIX 33 AD6 TYR C 132 GLY C 144 1 13 HELIX 34 AD7 ASN C 155 GLY C 170 1 16 HELIX 35 AD8 ASP C 179 SER C 183 5 5 HELIX 36 AD9 THR C 191 GLY C 201 1 11 HELIX 37 AE1 PHE D 12 ASN D 16 1 5 HELIX 38 AE2 ASN D 23 LYS D 28 5 6 HELIX 39 AE3 LYS D 30 GLY D 36 1 7 HELIX 40 AE4 GLY D 50 ASN D 60 1 11 HELIX 41 AE5 PHE D 71 GLU D 86 1 16 HELIX 42 AE6 ASP D 96 ASP D 98 5 3 HELIX 43 AE7 THR D 99 PHE D 104 1 6 HELIX 44 AE8 LYS D 122 ARG D 129 5 8 HELIX 45 AE9 TYR D 132 GLY D 144 1 13 HELIX 46 AF1 ASN D 155 GLY D 170 1 16 HELIX 47 AF2 ASP D 179 SER D 183 5 5 HELIX 48 AF3 THR D 191 PHE D 197 1 7 HELIX 49 AF4 LEU E 13 ALA E 17 5 5 HELIX 50 AF5 ASN E 23 LYS E 28 5 6 HELIX 51 AF6 LYS E 30 GLY E 36 1 7 HELIX 52 AF7 GLY E 50 ASN E 60 1 11 HELIX 53 AF8 PHE E 71 GLU E 86 1 16 HELIX 54 AF9 ASP E 96 ASP E 98 5 3 HELIX 55 AG1 THR E 99 PHE E 104 1 6 HELIX 56 AG2 LYS E 122 ARG E 129 5 8 HELIX 57 AG3 TYR E 132 GLY E 144 1 13 HELIX 58 AG4 ASN E 155 GLY E 170 1 16 HELIX 59 AG5 ASP E 179 SER E 183 5 5 HELIX 60 AG6 THR E 191 GLY E 201 1 11 HELIX 61 AG7 ASP F 10 ASN F 16 1 7 HELIX 62 AG8 ASN F 23 LYS F 28 5 6 HELIX 63 AG9 LYS F 30 GLY F 36 1 7 HELIX 64 AH1 GLY F 50 ASN F 60 1 11 HELIX 65 AH2 PHE F 71 SER F 85 1 15 HELIX 66 AH3 ASP F 96 ASP F 98 5 3 HELIX 67 AH4 THR F 99 PHE F 104 1 6 HELIX 68 AH5 LYS F 122 ARG F 129 5 8 HELIX 69 AH6 TYR F 132 GLY F 144 1 13 HELIX 70 AH7 ASN F 155 GLY F 170 1 16 HELIX 71 AH8 ASP F 179 SER F 183 5 5 HELIX 72 AH9 THR F 191 LYS F 196 1 6 SHEET 1 AA1 7 VAL A 90 LEU A 93 0 SHEET 2 AA1 7 ASN A 64 ILE A 68 1 N GLY A 67 O LEU A 93 SHEET 3 AA1 7 ILE A 41 VAL A 45 1 N GLU A 44 O ILE A 68 SHEET 4 AA1 7 ARG A 111 ASN A 115 1 O TYR A 113 N ILE A 43 SHEET 5 AA1 7 SER A 148 THR A 153 1 O LYS A 152 N LEU A 114 SHEET 6 AA1 7 TYR A 205 GLU A 210 -1 O TYR A 205 N THR A 153 SHEET 7 AA1 7 LEU A 172 SER A 177 -1 N LEU A 172 O GLU A 210 SHEET 1 AA2 7 VAL B 90 LEU B 93 0 SHEET 2 AA2 7 ASN B 64 ILE B 68 1 N GLY B 67 O LYS B 91 SHEET 3 AA2 7 ILE B 41 VAL B 45 1 N GLU B 44 O ILE B 68 SHEET 4 AA2 7 ARG B 111 ASN B 115 1 O TYR B 113 N ILE B 43 SHEET 5 AA2 7 SER B 148 THR B 153 1 O HIS B 150 N LEU B 114 SHEET 6 AA2 7 TYR B 205 GLU B 210 -1 O TYR B 205 N THR B 153 SHEET 7 AA2 7 LEU B 172 SER B 177 -1 N LEU B 172 O GLU B 210 SHEET 1 AA3 7 VAL C 90 LEU C 93 0 SHEET 2 AA3 7 ASN C 64 ILE C 68 1 N GLY C 67 O LEU C 93 SHEET 3 AA3 7 ILE C 41 VAL C 45 1 N GLU C 44 O ILE C 68 SHEET 4 AA3 7 ARG C 111 ASN C 115 1 O TYR C 113 N ILE C 43 SHEET 5 AA3 7 SER C 148 THR C 153 1 O HIS C 150 N LEU C 114 SHEET 6 AA3 7 TYR C 205 GLU C 210 -1 O TYR C 205 N THR C 153 SHEET 7 AA3 7 LEU C 172 SER C 177 -1 N LEU C 172 O GLU C 210 SHEET 1 AA4 7 VAL D 90 LEU D 93 0 SHEET 2 AA4 7 ASN D 64 ILE D 68 1 N GLY D 67 O LEU D 93 SHEET 3 AA4 7 ILE D 41 VAL D 45 1 N GLU D 44 O ILE D 68 SHEET 4 AA4 7 VAL D 109 ASN D 115 1 O LYS D 110 N ILE D 41 SHEET 5 AA4 7 SER D 148 THR D 153 1 O SER D 148 N VAL D 112 SHEET 6 AA4 7 TYR D 205 GLU D 210 -1 O TYR D 205 N THR D 153 SHEET 7 AA4 7 LEU D 172 SER D 177 -1 N LEU D 172 O GLU D 210 SHEET 1 AA5 7 VAL E 90 LEU E 93 0 SHEET 2 AA5 7 ASN E 64 ILE E 68 1 N GLY E 67 O LEU E 93 SHEET 3 AA5 7 ILE E 41 VAL E 45 1 N GLU E 44 O ILE E 68 SHEET 4 AA5 7 ARG E 111 ASN E 115 1 O TYR E 113 N ILE E 43 SHEET 5 AA5 7 SER E 148 THR E 153 1 O SER E 148 N VAL E 112 SHEET 6 AA5 7 TYR E 205 GLU E 210 -1 O TYR E 205 N THR E 153 SHEET 7 AA5 7 LEU E 172 SER E 177 -1 N LEU E 172 O GLU E 210 SHEET 1 AA6 7 VAL F 90 LEU F 93 0 SHEET 2 AA6 7 ASN F 64 ILE F 68 1 N GLY F 67 O LEU F 93 SHEET 3 AA6 7 ILE F 41 VAL F 45 1 N GLU F 44 O ILE F 68 SHEET 4 AA6 7 ARG F 111 ASN F 115 1 O TYR F 113 N ILE F 43 SHEET 5 AA6 7 SER F 148 THR F 153 1 O HIS F 150 N LEU F 114 SHEET 6 AA6 7 TYR F 205 GLU F 210 -1 O ALA F 207 N PHE F 151 SHEET 7 AA6 7 LEU F 172 SER F 177 -1 N LEU F 172 O GLU F 210 LINK NA NA A 301 O HOH E 558 1555 1555 2.30 CRYST1 42.620 103.680 103.690 118.12 97.91 97.84 P 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023463 0.003229 0.005625 0.00000 SCALE2 0.000000 0.009736 0.005613 0.00000 SCALE3 0.000000 0.000000 0.011239 0.00000