HEADER STRUCTURAL PROTEIN 26-MAR-21 7O0S TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF CEP164(1-109) BOUND TO TITLE 2 CAMELID NANOBODY 36Z COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANOBODY 36Z; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CENTROSOMAL PROTEIN OF 164 KDA; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: CEP164; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELIDAE MIXED LIBRARY; SOURCE 3 ORGANISM_TAXID: 1579311; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: CEP164, KIAA1052, NPHP15; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CENTRIOLE CENTROSOME BASAL BODY CILIOGENESIS, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.R.E SILVA,M.VAN BREUGEL REVDAT 5 31-JAN-24 7O0S 1 REMARK REVDAT 4 21-DEC-22 7O0S 1 JRNL REVDAT 3 19-JAN-22 7O0S 1 JRNL REMARK REVDAT 2 22-SEP-21 7O0S 1 JRNL REMARK REVDAT 1 15-SEP-21 7O0S 0 JRNL AUTH I.ROSA E SILVA,L.BINO,C.M.JOHNSON,T.J.RUTHERFORD,D.NEUHAUS, JRNL AUTH 2 A.ANDREEVA,L.CAJANEK,M.VAN BREUGEL JRNL TITL MOLECULAR MECHANISMS UNDERLYING THE ROLE OF THE CENTRIOLAR JRNL TITL 2 CEP164-TTBK2 COMPLEX IN CILIOPATHIES. JRNL REF STRUCTURE V. 30 114 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 34499853 JRNL DOI 10.1016/J.STR.2021.08.007 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0009 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 24957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1259 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2606 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.4037 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.4433 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1719 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.213 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 11 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8194 -3.4320 -46.4010 REMARK 3 T TENSOR REMARK 3 T11: 0.2740 T22: 0.4136 REMARK 3 T33: 0.2609 T12: 0.0465 REMARK 3 T13: 0.0165 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 6.5266 L22: 6.3770 REMARK 3 L33: 4.5000 L12: 1.1765 REMARK 3 L13: -0.8920 L23: -0.7916 REMARK 3 S TENSOR REMARK 3 S11: -0.1141 S12: 0.5371 S13: 0.1080 REMARK 3 S21: -0.5184 S22: 0.0548 S23: -0.2543 REMARK 3 S31: 0.0086 S32: 0.1286 S33: -0.0068 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 25 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2149 4.6920 -31.4300 REMARK 3 T TENSOR REMARK 3 T11: 0.3055 T22: 0.3520 REMARK 3 T33: 0.3298 T12: -0.0571 REMARK 3 T13: 0.0261 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.5781 L22: 0.7740 REMARK 3 L33: 1.6491 L12: -0.1665 REMARK 3 L13: 0.7358 L23: 0.5949 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: 0.1483 S13: 0.1957 REMARK 3 S21: -0.0560 S22: 0.0453 S23: 0.0097 REMARK 3 S31: -0.4547 S32: 0.3406 S33: 0.1112 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 55 REMARK 3 ORIGIN FOR THE GROUP (A): -15.4363 -3.6677 -12.8049 REMARK 3 T TENSOR REMARK 3 T11: 0.3097 T22: 0.3120 REMARK 3 T33: 0.2625 T12: -0.0011 REMARK 3 T13: 0.0152 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 2.4220 L22: 2.6257 REMARK 3 L33: 2.7876 L12: -0.3185 REMARK 3 L13: 0.3957 L23: -0.5914 REMARK 3 S TENSOR REMARK 3 S11: -0.0404 S12: -0.0421 S13: 0.0541 REMARK 3 S21: 0.3241 S22: 0.1109 S23: 0.1529 REMARK 3 S31: -0.0930 S32: -0.4635 S33: 0.0004 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 56 B 88 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0384 -9.4355 -33.1793 REMARK 3 T TENSOR REMARK 3 T11: 0.2299 T22: 0.2411 REMARK 3 T33: 0.2394 T12: 0.0027 REMARK 3 T13: 0.0088 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.7515 L22: 0.8163 REMARK 3 L33: 1.6662 L12: -0.0741 REMARK 3 L13: 0.7324 L23: -0.0043 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: -0.1498 S13: -0.0530 REMARK 3 S21: 0.0297 S22: 0.0128 S23: 0.0244 REMARK 3 S31: 0.0177 S32: -0.0855 S33: -0.0313 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 89 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9098 -11.4325 -11.5877 REMARK 3 T TENSOR REMARK 3 T11: 0.2921 T22: 0.2336 REMARK 3 T33: 0.3920 T12: 0.0227 REMARK 3 T13: -0.0105 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 3.4770 L22: 2.7909 REMARK 3 L33: 4.8653 L12: -0.3326 REMARK 3 L13: 0.4658 L23: -1.0508 REMARK 3 S TENSOR REMARK 3 S11: 0.1080 S12: -0.1553 S13: -0.1601 REMARK 3 S21: 0.1234 S22: 0.1479 S23: -0.4029 REMARK 3 S31: 0.3485 S32: 0.2993 S33: -0.0568 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): -31.9784 4.5342 -31.3640 REMARK 3 T TENSOR REMARK 3 T11: 0.3200 T22: 0.5633 REMARK 3 T33: 0.2541 T12: 0.0171 REMARK 3 T13: 0.0013 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 5.0354 L22: 2.5554 REMARK 3 L33: 1.7798 L12: 0.1281 REMARK 3 L13: 1.8298 L23: 0.3584 REMARK 3 S TENSOR REMARK 3 S11: 0.1062 S12: -0.7115 S13: -0.0048 REMARK 3 S21: 0.5828 S22: 0.0724 S23: 0.0948 REMARK 3 S31: -0.1619 S32: -0.0331 S33: 0.0586 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): -43.2925 0.5041 -50.8962 REMARK 3 T TENSOR REMARK 3 T11: 0.2786 T22: 0.4840 REMARK 3 T33: 0.2525 T12: 0.0181 REMARK 3 T13: -0.0081 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 1.7176 L22: 1.5074 REMARK 3 L33: 6.2746 L12: -0.2422 REMARK 3 L13: -0.8606 L23: -0.3797 REMARK 3 S TENSOR REMARK 3 S11: -0.1857 S12: 0.3453 S13: 0.0374 REMARK 3 S21: 0.0264 S22: 0.2259 S23: 0.1002 REMARK 3 S31: -0.0808 S32: -0.4426 S33: -0.0370 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): -27.0433 4.0236 -37.6133 REMARK 3 T TENSOR REMARK 3 T11: 0.2224 T22: 0.2554 REMARK 3 T33: 0.2382 T12: 0.0032 REMARK 3 T13: 0.0034 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.4707 L22: 0.6684 REMARK 3 L33: 1.3844 L12: -0.3714 REMARK 3 L13: 0.4367 L23: -0.0367 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.1585 S13: 0.0545 REMARK 3 S21: 0.0570 S22: 0.0484 S23: -0.1234 REMARK 3 S31: -0.0621 S32: -0.1536 S33: 0.0598 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): -27.0988 -7.2165 -43.1414 REMARK 3 T TENSOR REMARK 3 T11: 0.2415 T22: 0.2150 REMARK 3 T33: 0.2803 T12: -0.0116 REMARK 3 T13: 0.0141 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.9480 L22: 2.4365 REMARK 3 L33: 1.1085 L12: 0.8947 REMARK 3 L13: 0.0943 L23: -0.5505 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.0030 S13: -0.0729 REMARK 3 S21: -0.1659 S22: 0.0817 S23: -0.0375 REMARK 3 S31: 0.1379 S32: 0.0749 S33: -0.0467 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): -22.6849 1.1243 -50.6996 REMARK 3 T TENSOR REMARK 3 T11: 0.2751 T22: 0.3068 REMARK 3 T33: 0.2338 T12: 0.0254 REMARK 3 T13: 0.0335 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.3336 L22: 1.0764 REMARK 3 L33: 2.6387 L12: -0.0197 REMARK 3 L13: 1.2723 L23: 0.1211 REMARK 3 S TENSOR REMARK 3 S11: -0.1003 S12: 0.4566 S13: 0.0470 REMARK 3 S21: -0.3220 S22: 0.0691 S23: -0.2348 REMARK 3 S31: -0.1279 S32: 0.0964 S33: 0.0088 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): -26.9396 8.3169 -43.0140 REMARK 3 T TENSOR REMARK 3 T11: 0.2899 T22: 0.2603 REMARK 3 T33: 0.2446 T12: 0.0127 REMARK 3 T13: -0.0033 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.5740 L22: 1.9996 REMARK 3 L33: 4.6829 L12: 0.2928 REMARK 3 L13: 1.7876 L23: 1.4567 REMARK 3 S TENSOR REMARK 3 S11: -0.0764 S12: 0.3747 S13: 0.2987 REMARK 3 S21: -0.2286 S22: -0.0807 S23: 0.0846 REMARK 3 S31: -0.5454 S32: 0.0511 S33: 0.1385 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): -36.9319 -3.9381 -52.8648 REMARK 3 T TENSOR REMARK 3 T11: 0.3347 T22: 0.3693 REMARK 3 T33: 0.2663 T12: -0.0346 REMARK 3 T13: 0.0190 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 2.5638 L22: 4.1584 REMARK 3 L33: 4.1997 L12: 0.8491 REMARK 3 L13: -0.0656 L23: -3.0605 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.3681 S13: -0.0586 REMARK 3 S21: -0.7318 S22: -0.0787 S23: -0.0305 REMARK 3 S31: 0.3931 S32: -0.0947 S33: -0.0332 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): -23.2087 -1.5512 -33.1313 REMARK 3 T TENSOR REMARK 3 T11: 0.2662 T22: 0.1952 REMARK 3 T33: 0.2612 T12: 0.0021 REMARK 3 T13: -0.0050 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.3283 L22: 0.3966 REMARK 3 L33: 1.5168 L12: -0.2931 REMARK 3 L13: 1.0041 L23: -0.0913 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: -0.1476 S13: 0.1778 REMARK 3 S21: 0.0074 S22: -0.0272 S23: -0.0165 REMARK 3 S31: -0.0094 S32: 0.0954 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): -40.3292 -3.3816 -43.2287 REMARK 3 T TENSOR REMARK 3 T11: 0.2741 T22: 0.3103 REMARK 3 T33: 0.2078 T12: -0.0314 REMARK 3 T13: -0.0047 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 4.5144 L22: 1.5235 REMARK 3 L33: 4.3266 L12: -0.2098 REMARK 3 L13: 2.9079 L23: -0.6575 REMARK 3 S TENSOR REMARK 3 S11: -0.1120 S12: -0.3431 S13: 0.1495 REMARK 3 S21: -0.0870 S22: -0.1154 S23: 0.0675 REMARK 3 S31: 0.2288 S32: -0.5717 S33: -0.0320 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25042 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 59.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 1.65800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7O06 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18 M TRI-AMMONIUM CITRATE, 20 % REMARK 280 (W/V) PEG 3350, VAPOR DIFFUSION, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 9.80396 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.27900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.20362 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 9.80396 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.27900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 59.20362 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 120 REMARK 465 ALA A 121 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 105 REMARK 465 SER B 106 REMARK 465 GLY B 107 REMARK 465 ALA B 108 REMARK 465 ILE B 109 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 5 77.17 48.64 REMARK 500 ASP A 66 -15.77 77.90 REMARK 500 ARG A 67 -28.65 -144.58 REMARK 500 ALA A 92 166.64 178.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7O06 RELATED DB: PDB REMARK 900 7O06 CONTAINS THE SAME PROTEIN BOUND TO NANOBODY 10Z REMARK 900 RELATED ID: 7NWJ RELATED DB: PDB REMARK 900 7NWJ CONTAINS THE NMR STRUCTURE OF THE SAME PROTEIN DBREF 7O0S A -4 121 PDB 7O0S 7O0S -4 121 DBREF 7O0S B 1 109 UNP Q9UPV0 CE164_HUMAN 1 109 SEQADV 7O0S GLY B -4 UNP Q9UPV0 EXPRESSION TAG SEQADV 7O0S PRO B -3 UNP Q9UPV0 EXPRESSION TAG SEQADV 7O0S LEU B -2 UNP Q9UPV0 EXPRESSION TAG SEQADV 7O0S GLY B -1 UNP Q9UPV0 EXPRESSION TAG SEQADV 7O0S SER B 0 UNP Q9UPV0 EXPRESSION TAG SEQRES 1 A 126 GLY PRO LEU GLY SER MET GLY GLN VAL GLN LEU GLN GLU SEQRES 2 A 126 SER GLY GLY GLY LEU VAL GLN ALA GLY GLY SER LEU ASN SEQRES 3 A 126 LEU SER CYS VAL ALA SER GLY SER SER HIS PHE ASN SER SEQRES 4 A 126 MET GLY TRP TYR ARG GLN ALA PRO GLY LYS GLN ARG ASP SEQRES 5 A 126 LEU VAL ALA ASP ILE SER ASN ASP GLY VAL THR ASN TYR SEQRES 6 A 126 ALA ASP SER VAL LYS ASP ARG PHE THR ILE SER THR ASN SEQRES 7 A 126 ASN ALA LYS ASN ALA VAL TYR LEU GLN MET ASN ASN LEU SEQRES 8 A 126 LYS PRO GLU ASP THR ALA VAL TYR TYR CYS ASN ALA VAL SEQRES 9 A 126 ALA VAL ALA GLY ARG ALA PHE SER TYR TRP GLY GLN GLY SEQRES 10 A 126 THR GLN VAL THR VAL SER SER ALA ALA SEQRES 1 B 114 GLY PRO LEU GLY SER MET ALA GLY ARG PRO LEU ARG ILE SEQRES 2 B 114 GLY ASP GLN LEU VAL LEU GLU GLU ASP TYR ASP GLU THR SEQRES 3 B 114 TYR ILE PRO SER GLU GLN GLU ILE LEU GLU PHE ALA ARG SEQRES 4 B 114 GLU ILE GLY ILE ASP PRO ILE LYS GLU PRO GLU LEU MET SEQRES 5 B 114 TRP LEU ALA ARG GLU GLY ILE VAL ALA PRO LEU PRO GLY SEQRES 6 B 114 GLU TRP LYS PRO CYS GLN ASP ILE THR GLY ASP ILE TYR SEQRES 7 B 114 TYR PHE ASN PHE ALA ASN GLY GLN SER MET TRP ASP HIS SEQRES 8 B 114 PRO CYS ASP GLU HIS TYR ARG SER LEU VAL ILE GLN GLU SEQRES 9 B 114 ARG ALA LYS LEU SER THR SER GLY ALA ILE FORMUL 3 HOH *150(H2 O) HELIX 1 AA1 LYS A 87 THR A 91 5 5 HELIX 2 AA2 SER B 25 ILE B 36 1 12 HELIX 3 AA3 GLU B 43 GLU B 45 5 3 HELIX 4 AA4 LEU B 46 ILE B 54 1 9 HELIX 5 AA5 CYS B 88 SER B 104 1 17 SHEET 1 AA1 4 GLN A 7 SER A 9 0 SHEET 2 AA1 4 LEU A 20 VAL A 25 -1 O VAL A 25 N GLN A 7 SHEET 3 AA1 4 ALA A 78 MET A 83 -1 O MET A 83 N LEU A 20 SHEET 4 AA1 4 PHE A 68 THR A 72 -1 N SER A 71 O TYR A 80 SHEET 1 AA2 6 GLY A 12 GLN A 15 0 SHEET 2 AA2 6 THR A 113 SER A 118 1 O GLN A 114 N GLY A 12 SHEET 3 AA2 6 ALA A 92 VAL A 101 -1 N TYR A 94 O THR A 113 SHEET 4 AA2 6 SER A 34 GLN A 40 -1 N GLY A 36 O ASN A 97 SHEET 5 AA2 6 ASP A 47 SER A 53 -1 O ILE A 52 N MET A 35 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O ASN A 59 N ASP A 51 SHEET 1 AA3 4 GLY A 12 GLN A 15 0 SHEET 2 AA3 4 THR A 113 SER A 118 1 O GLN A 114 N GLY A 12 SHEET 3 AA3 4 ALA A 92 VAL A 101 -1 N TYR A 94 O THR A 113 SHEET 4 AA3 4 ALA A 105 TRP A 109 -1 O PHE A 106 N ALA A 100 SHEET 1 AA4 5 ARG B 7 ILE B 8 0 SHEET 2 AA4 5 GLN B 11 VAL B 13 -1 O GLN B 11 N ILE B 8 SHEET 3 AA4 5 TRP B 62 GLN B 66 -1 O GLN B 66 N LEU B 12 SHEET 4 AA4 5 ILE B 72 ASN B 76 -1 O TYR B 73 N CYS B 65 SHEET 5 AA4 5 GLN B 81 MET B 83 -1 O GLN B 81 N ASN B 76 CRYST1 38.258 50.558 119.867 90.00 98.95 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026138 0.000000 0.004117 0.00000 SCALE2 0.000000 0.019779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008445 0.00000