HEADER OXIDOREDUCTASE 29-MAR-21 7O1I TITLE STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS BETA-OXIDATION TRIFUNCTIONAL TITLE 2 ENZYME ALPHA-E141A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ACYLTRANSFERASE RV0859; COMPND 3 CHAIN: D; COMPND 4 EC: 2.3.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 3-HYDROXYACYL-COA DEHYDROGENASE; COMPND 8 CHAIN: A; COMPND 9 EC: 1.1.1.35; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: FADA, RV0859; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 9 ORGANISM_TAXID: 83332; SOURCE 10 GENE: FADB, RV0860; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRIFUNCTIONAL ENZYME, FATTY ACID BETA OXIDATION, MYCOBACTERIUM KEYWDS 2 TUBERCULOSIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.DALWANI,R.K.WIERENGA,R.VENKATESAN REVDAT 3 31-JAN-24 7O1I 1 REMARK REVDAT 2 22-SEP-21 7O1I 1 JRNL REVDAT 1 25-AUG-21 7O1I 0 JRNL AUTH S.DALWANI,O.LAMPELA,P.LEPROVOST,W.SCHMITZ,A.H.JUFFER, JRNL AUTH 2 R.K.WIERENGA,R.VENKATESAN JRNL TITL SUBSTRATE SPECIFICITY AND CONFORMATIONAL FLEXIBILITY JRNL TITL 2 PROPERTIES OF THE MYCOBACTERIUM TUBERCULOSIS BETA-OXIDATION JRNL TITL 3 TRIFUNCTIONAL ENZYME. JRNL REF J.STRUCT.BIOL. V. 213 07776 2021 JRNL REFN ESSN 1095-8657 JRNL PMID 34371166 JRNL DOI 10.1016/J.JSB.2021.107776 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.VENKATESAN,R.K.WIERENGA REMARK 1 TITL STRUCTURE OF MYCOBACTERIAL BETA-OXIDATION TRIFUNCTIONAL REMARK 1 TITL 2 ENZYME REVEALS ITS ALTERED ASSEMBLY AND PUTATIVE SUBSTRATE REMARK 1 TITL 3 CHANNELING PATHWAY REMARK 1 REF ACS CHEM BIOL V. 8 1063 2013 REMARK 1 REFN ISSN 1554-8929 REMARK 1 PMID 23496842 REMARK 1 DOI 10.1021/CB400007K REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 62067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.370 REMARK 3 FREE R VALUE TEST SET COUNT : 2091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0400 - 5.6800 0.99 4188 147 0.1745 0.1989 REMARK 3 2 5.6800 - 4.5100 1.00 4090 142 0.1742 0.1776 REMARK 3 3 4.5100 - 3.9400 1.00 4038 141 0.1627 0.1922 REMARK 3 4 3.9400 - 3.5800 1.00 4037 140 0.1934 0.2308 REMARK 3 5 3.5800 - 3.3200 1.00 4026 140 0.2260 0.2661 REMARK 3 6 3.3200 - 3.1300 1.00 3997 140 0.2914 0.2880 REMARK 3 7 3.1300 - 2.9700 1.00 4026 140 0.3133 0.3419 REMARK 3 8 2.9700 - 2.8400 1.00 3972 139 0.3433 0.3345 REMARK 3 9 2.8400 - 2.7300 1.00 3999 139 0.3896 0.4098 REMARK 3 10 2.7300 - 2.6400 1.00 3967 138 0.4437 0.5556 REMARK 3 11 2.6400 - 2.5600 1.00 3945 138 0.4083 0.4545 REMARK 3 12 2.5600 - 2.4800 1.00 3978 137 0.4031 0.3557 REMARK 3 13 2.4800 - 2.4200 1.00 4005 140 0.4124 0.4649 REMARK 3 14 2.4200 - 2.3600 1.00 3984 139 0.4408 0.4413 REMARK 3 15 2.3600 - 2.3000 0.95 3724 131 0.4963 0.5681 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.521 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.011 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 8394 REMARK 3 ANGLE : 0.456 11408 REMARK 3 CHIRALITY : 0.040 1313 REMARK 3 PLANARITY : 0.004 1488 REMARK 3 DIHEDRAL : 16.809 2996 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN D AND RESSEQ 3:501) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1852 -0.0972 -16.3580 REMARK 3 T TENSOR REMARK 3 T11: 0.8776 T22: 0.5742 REMARK 3 T33: 0.4053 T12: -0.0222 REMARK 3 T13: 0.0821 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 0.7734 L22: 1.5854 REMARK 3 L33: 2.7745 L12: 0.0122 REMARK 3 L13: 0.0164 L23: 0.2947 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: 0.1308 S13: 0.0874 REMARK 3 S21: -0.2975 S22: 0.1389 S23: -0.0449 REMARK 3 S31: -0.2880 S32: 0.3373 S33: -0.1487 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ -10:801) REMARK 3 ORIGIN FOR THE GROUP (A): -42.3976 41.6152 -4.1390 REMARK 3 T TENSOR REMARK 3 T11: 1.4221 T22: 0.5812 REMARK 3 T33: 0.5288 T12: 0.0058 REMARK 3 T13: -0.0128 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.3675 L22: 0.8181 REMARK 3 L33: 0.0503 L12: 0.0029 REMARK 3 L13: 0.0417 L23: -0.5142 REMARK 3 S TENSOR REMARK 3 S11: -0.0530 S12: 0.1068 S13: 0.1546 REMARK 3 S21: -0.3134 S22: 0.0318 S23: -0.0523 REMARK 3 S31: -0.2624 S32: -0.0093 S33: -0.0019 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O1I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114870. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9720 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62420 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4B3H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 0.1M MES PH 5.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.90200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.90200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.00800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 102.93400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.00800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 102.93400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.90200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.00800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 102.93400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.90200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.00800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 102.93400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 79880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -239.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 MET A -11 REMARK 465 HIS A -5A REMARK 465 HIS A -5B REMARK 465 HIS A -5C REMARK 465 SER A -5D REMARK 465 GLN A -5E REMARK 465 ASP A -5F REMARK 465 PRO A -5G REMARK 465 ASN A -5H REMARK 465 SER A -5I REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 19 CG CD CE NZ REMARK 470 ASP D 45 CG OD1 OD2 REMARK 470 GLU D 97 CG CD OE1 OE2 REMARK 470 ASP D 112 CG OD1 OD2 REMARK 470 ASP D 212 CG OD1 OD2 REMARK 470 GLU D 216 CG CD OE1 OE2 REMARK 470 GLU D 226 CG CD OE1 OE2 REMARK 470 LYS D 276 CG CD CE NZ REMARK 470 MET A 1 CG SD CE REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 THR A 323 OG1 CG2 REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 ARG A 327 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 GLU A 359 CG CD OE1 OE2 REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 LEU A 371 CG CD1 CD2 REMARK 470 LYS A 374 CG CD CE NZ REMARK 470 GLU A 377 CG CD OE1 OE2 REMARK 470 ARG A 378 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 380 CG CD NE CZ NH1 NH2 REMARK 470 THR A 382 OG1 CG2 REMARK 470 GLU A 384 CG CD OE1 OE2 REMARK 470 ARG A 385 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 387 CG OD1 OD2 REMARK 470 ARG A 392 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 GLU A 425 CG CD OE1 OE2 REMARK 470 GLU A 427 CG CD OE1 OE2 REMARK 470 ASP A 428 CG OD1 OD2 REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 ASP A 468 CG OD1 OD2 REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 LYS A 480 CG CD CE NZ REMARK 470 GLU A 484 CG CD OE1 OE2 REMARK 470 GLU A 554 CG CD OE1 OE2 REMARK 470 THR A 577 OG1 CG2 REMARK 470 GLN A 579 CG CD OE1 NE2 REMARK 470 LYS A 611 CG CD CE NZ REMARK 470 ARG A 620 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 621 CG CD OE1 OE2 REMARK 470 GLU A 716 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER D 60 72.12 -117.85 REMARK 500 ASP D 68 76.41 50.59 REMARK 500 PHE D 91 -146.23 52.83 REMARK 500 ASP D 212 30.75 -96.57 REMARK 500 ASP D 295 121.12 -36.66 REMARK 500 MET D 299 -47.36 64.61 REMARK 500 SER A -8 -158.70 -147.25 REMARK 500 PRO A 2 -158.71 -75.27 REMARK 500 ASP A 21 83.15 -153.73 REMARK 500 ALA A 66 116.81 -161.33 REMARK 500 PRO A 140 32.14 -89.36 REMARK 500 PRO A 148 88.79 -66.68 REMARK 500 ASN A 212 78.29 -153.72 REMARK 500 PHE A 304 -62.52 -126.91 REMARK 500 ALA A 333 31.84 -87.81 REMARK 500 ARG A 378 -77.05 -135.91 REMARK 500 GLN A 383 -166.94 -166.59 REMARK 500 THR A 442 -48.66 -133.82 REMARK 500 PHE A 509 -127.06 54.22 REMARK 500 REMARK 500 REMARK: NULL DBREF 7O1I D 1 403 UNP O53871 Y0859_MYCTU 1 403 DBREF 7O1I A 1 720 UNP O53872 O53872_MYCTU 1 720 SEQADV 7O1I MET A -11 UNP O53872 INITIATING METHIONINE SEQADV 7O1I GLY A -10 UNP O53872 EXPRESSION TAG SEQADV 7O1I SER A -9 UNP O53872 EXPRESSION TAG SEQADV 7O1I SER A -8 UNP O53872 EXPRESSION TAG SEQADV 7O1I HIS A -7 UNP O53872 EXPRESSION TAG SEQADV 7O1I HIS A -6 UNP O53872 EXPRESSION TAG SEQADV 7O1I HIS A -5 UNP O53872 EXPRESSION TAG SEQADV 7O1I HIS A -5A UNP O53872 EXPRESSION TAG SEQADV 7O1I HIS A -5B UNP O53872 EXPRESSION TAG SEQADV 7O1I HIS A -5C UNP O53872 EXPRESSION TAG SEQADV 7O1I SER A -5D UNP O53872 EXPRESSION TAG SEQADV 7O1I GLN A -5E UNP O53872 EXPRESSION TAG SEQADV 7O1I ASP A -5F UNP O53872 EXPRESSION TAG SEQADV 7O1I PRO A -5G UNP O53872 EXPRESSION TAG SEQADV 7O1I ASN A -5H UNP O53872 EXPRESSION TAG SEQADV 7O1I SER A -5I UNP O53872 EXPRESSION TAG SEQADV 7O1I ALA A 141 UNP O53872 GLU 141 ENGINEERED MUTATION SEQRES 1 D 403 MET SER GLU GLU ALA PHE ILE TYR GLU ALA ILE ARG THR SEQRES 2 D 403 PRO ARG GLY LYS GLN LYS ASN GLY SER LEU HIS GLU VAL SEQRES 3 D 403 LYS PRO LEU SER LEU VAL VAL GLY LEU ILE ASP GLU LEU SEQRES 4 D 403 ARG LYS ARG HIS PRO ASP LEU ASP GLU ASN LEU ILE SER SEQRES 5 D 403 ASP VAL ILE LEU GLY CYS VAL SER PRO VAL GLY ASP GLN SEQRES 6 D 403 GLY GLY ASP ILE ALA ARG ALA ALA VAL LEU ALA SER GLY SEQRES 7 D 403 MET PRO VAL THR SER GLY GLY VAL GLN LEU ASN ARG PHE SEQRES 8 D 403 CSO ALA SER GLY LEU GLU ALA VAL ASN THR ALA ALA GLN SEQRES 9 D 403 LYS VAL ARG SER GLY TRP ASP ASP LEU VAL LEU ALA GLY SEQRES 10 D 403 GLY VAL GLU SER MET SER ARG VAL PRO MET GLY SER ASP SEQRES 11 D 403 GLY GLY ALA MET GLY LEU ASP PRO ALA THR ASN TYR ASP SEQRES 12 D 403 VAL MET PHE VAL PRO GLN SER ILE GLY ALA ASP LEU ILE SEQRES 13 D 403 ALA THR ILE GLU GLY PHE SER ARG GLU ASP VAL ASP ALA SEQRES 14 D 403 TYR ALA LEU ARG SER GLN GLN LYS ALA ALA GLU ALA TRP SEQRES 15 D 403 SER GLY GLY TYR PHE ALA LYS SER VAL VAL PRO VAL ARG SEQRES 16 D 403 ASP GLN ASN GLY LEU LEU ILE LEU ASP HIS ASP GLU HIS SEQRES 17 D 403 MET ARG PRO ASP THR THR LYS GLU GLY LEU ALA LYS LEU SEQRES 18 D 403 LYS PRO ALA PHE GLU GLY LEU ALA ALA LEU GLY GLY PHE SEQRES 19 D 403 ASP ASP VAL ALA LEU GLN LYS TYR HIS TRP VAL GLU LYS SEQRES 20 D 403 ILE ASN HIS VAL HIS THR GLY GLY ASN SER SER GLY ILE SEQRES 21 D 403 VAL ASP GLY ALA ALA LEU VAL MET ILE GLY SER ALA ALA SEQRES 22 D 403 ALA GLY LYS LEU GLN GLY LEU THR PRO ARG ALA ARG ILE SEQRES 23 D 403 VAL ALA THR ALA THR SER GLY ALA ASP PRO VAL ILE MET SEQRES 24 D 403 LEU THR GLY PRO THR PRO ALA THR ARG LYS VAL LEU ASP SEQRES 25 D 403 ARG ALA GLY LEU THR VAL ASP ASP ILE ASP LEU PHE GLU SEQRES 26 D 403 LEU ASN GLU ALA PHE ALA SER VAL VAL LEU LYS PHE GLN SEQRES 27 D 403 LYS ASP LEU ASN ILE PRO ASP GLU LYS LEU ASN VAL ASN SEQRES 28 D 403 GLY GLY ALA ILE ALA MET GLY HIS PRO LEU GLY ALA THR SEQRES 29 D 403 GLY ALA MET ILE LEU GLY THR MET VAL ASP GLU LEU GLU SEQRES 30 D 403 ARG ARG ASN ALA ARG ARG ALA LEU ILE THR LEU CYS ILE SEQRES 31 D 403 GLY GLY GLY MET GLY VAL ALA THR ILE ILE GLU ARG VAL SEQRES 1 A 736 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 736 PRO ASN SER MET PRO ASP ASN THR ILE GLN TRP ASP LYS SEQRES 3 A 736 ASP ALA ASP GLY ILE VAL THR LEU THR MET ASP ASP PRO SEQRES 4 A 736 SER GLY SER THR ASN VAL MET ASN GLU ALA TYR ILE GLU SEQRES 5 A 736 SER MET GLY LYS ALA VAL ASP ARG LEU VAL ALA GLU LYS SEQRES 6 A 736 ASP SER ILE THR GLY VAL VAL VAL ALA SER ALA LYS LYS SEQRES 7 A 736 THR PHE PHE ALA GLY GLY ASP VAL LYS THR MET ILE GLN SEQRES 8 A 736 ALA ARG PRO GLU ASP ALA GLY ASP VAL PHE ASN THR VAL SEQRES 9 A 736 GLU THR ILE LYS ARG GLN LEU ARG THR LEU GLU THR LEU SEQRES 10 A 736 GLY LYS PRO VAL VAL ALA ALA ILE ASN GLY ALA ALA LEU SEQRES 11 A 736 GLY GLY GLY LEU GLU ILE ALA LEU ALA CYS HIS HIS ARG SEQRES 12 A 736 ILE ALA ALA ASP VAL LYS GLY SER GLN LEU GLY LEU PRO SEQRES 13 A 736 ALA VAL THR LEU GLY LEU LEU PRO GLY GLY GLY GLY VAL SEQRES 14 A 736 THR ARG THR VAL ARG MET PHE GLY ILE GLN ASN ALA PHE SEQRES 15 A 736 VAL SER VAL LEU ALA GLN GLY THR ARG PHE LYS PRO ALA SEQRES 16 A 736 LYS ALA LYS GLU ILE GLY LEU VAL ASP GLU LEU VAL ALA SEQRES 17 A 736 THR VAL GLU GLU LEU VAL PRO ALA ALA LYS ALA TRP ILE SEQRES 18 A 736 LYS GLU GLU LEU LYS ALA ASN PRO ASP GLY ALA GLY VAL SEQRES 19 A 736 GLN PRO TRP ASP LYS LYS GLY TYR LYS MET PRO GLY GLY SEQRES 20 A 736 THR PRO SER SER PRO GLY LEU ALA ALA ILE LEU PRO SER SEQRES 21 A 736 PHE PRO SER ASN LEU ARG LYS GLN LEU LYS GLY ALA PRO SEQRES 22 A 736 MET PRO ALA PRO ARG ALA ILE LEU ALA ALA ALA VAL GLU SEQRES 23 A 736 GLY ALA GLN VAL ASP PHE ASP THR ALA SER ARG ILE GLU SEQRES 24 A 736 SER ARG TYR PHE ALA SER LEU VAL THR GLY GLN VAL ALA SEQRES 25 A 736 LYS ASN MET MET GLN ALA PHE PHE PHE ASP LEU GLN ALA SEQRES 26 A 736 ILE ASN ALA GLY GLY SER ARG PRO GLU GLY ILE GLY LYS SEQRES 27 A 736 THR PRO ILE LYS ARG ILE GLY VAL LEU GLY ALA GLY MET SEQRES 28 A 736 MET GLY ALA GLY ILE ALA TYR VAL SER ALA LYS ALA GLY SEQRES 29 A 736 TYR GLU VAL VAL LEU LYS ASP VAL SER LEU GLU ALA ALA SEQRES 30 A 736 ALA LYS GLY LYS GLY TYR SER GLU LYS LEU GLU ALA LYS SEQRES 31 A 736 ALA LEU GLU ARG GLY ARG THR THR GLN GLU ARG SER ASP SEQRES 32 A 736 ALA LEU LEU ALA ARG ILE THR PRO THR ALA ASP ALA ALA SEQRES 33 A 736 ASP PHE LYS GLY VAL ASP PHE VAL ILE GLU ALA VAL PHE SEQRES 34 A 736 GLU ASN GLN GLU LEU LYS HIS LYS VAL PHE GLY GLU ILE SEQRES 35 A 736 GLU ASP ILE VAL GLU PRO ASN ALA ILE LEU GLY SER ASN SEQRES 36 A 736 THR SER THR LEU PRO ILE THR GLY LEU ALA THR GLY VAL SEQRES 37 A 736 LYS ARG GLN GLU ASP PHE ILE GLY ILE HIS PHE PHE SER SEQRES 38 A 736 PRO VAL ASP LYS MET PRO LEU VAL GLU ILE ILE LYS GLY SEQRES 39 A 736 GLU LYS THR SER ASP GLU ALA LEU ALA ARG VAL PHE ASP SEQRES 40 A 736 TYR THR LEU ALA ILE GLY LYS THR PRO ILE VAL VAL ASN SEQRES 41 A 736 ASP SER ARG GLY PHE PHE THR SER ARG VAL ILE GLY THR SEQRES 42 A 736 PHE VAL ASN GLU ALA LEU ALA MET LEU GLY GLU GLY VAL SEQRES 43 A 736 GLU PRO ALA SER ILE GLU GLN ALA GLY SER GLN ALA GLY SEQRES 44 A 736 TYR PRO ALA PRO PRO LEU GLN LEU SER ASP GLU LEU ASN SEQRES 45 A 736 LEU GLU LEU MET HIS LYS ILE ALA VAL ALA THR ARG LYS SEQRES 46 A 736 GLY VAL GLU ASP ALA GLY GLY THR TYR GLN PRO HIS PRO SEQRES 47 A 736 ALA GLU ALA VAL VAL GLU LYS MET ILE GLU LEU GLY ARG SEQRES 48 A 736 SER GLY ARG LEU LYS GLY ALA GLY PHE TYR GLU TYR ALA SEQRES 49 A 736 ASP GLY LYS ARG SER GLY LEU TRP PRO GLY LEU ARG GLU SEQRES 50 A 736 THR PHE LYS SER GLY SER SER GLN PRO PRO LEU GLN ASP SEQRES 51 A 736 MET ILE ASP ARG MET LEU PHE ALA GLU ALA LEU GLU THR SEQRES 52 A 736 GLN LYS CYS LEU ASP GLU GLY VAL LEU THR SER THR ALA SEQRES 53 A 736 ASP ALA ASN ILE GLY SER ILE MET GLY ILE GLY PHE PRO SEQRES 54 A 736 PRO TRP THR GLY GLY SER ALA GLN PHE ILE VAL GLY TYR SEQRES 55 A 736 SER GLY PRO ALA GLY THR GLY LYS ALA ALA PHE VAL ALA SEQRES 56 A 736 ARG ALA ARG GLU LEU ALA ALA ALA TYR GLY ASP ARG PHE SEQRES 57 A 736 LEU PRO PRO GLU SER LEU LEU SER MODRES 7O1I CSO D 92 CYS MODIFIED RESIDUE HET CSO D 92 7 HET COA D 501 48 HET GOL D 502 6 HET SO4 D 503 5 HET SO4 D 504 5 HET SO4 D 505 5 HET SO4 D 506 5 HET SO4 D 507 5 HET GOL A 801 6 HET SO4 A 802 5 HET SO4 A 803 5 HET SO4 A 804 5 HET SO4 A 805 5 HET SO4 A 806 5 HETNAM CSO S-HYDROXYCYSTEINE HETNAM COA COENZYME A HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 3 COA C21 H36 N7 O16 P3 S FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 SO4 10(O4 S 2-) FORMUL 16 HOH *44(H2 O) HELIX 1 AA1 GLY D 21 VAL D 26 5 6 HELIX 2 AA2 LYS D 27 HIS D 43 1 17 HELIX 3 AA3 ASP D 47 ASN D 49 5 3 HELIX 4 AA4 VAL D 62 GLY D 66 5 5 HELIX 5 AA5 ASP D 68 SER D 77 1 10 HELIX 6 AA6 PRO D 80 GLY D 84 5 5 HELIX 7 AA7 ARG D 90 CSO D 92 5 3 HELIX 8 AA8 ALA D 93 GLY D 109 1 17 HELIX 9 AA9 GLY D 132 ASP D 137 1 6 HELIX 10 AB1 ASP D 137 MET D 145 1 9 HELIX 11 AB2 PRO D 148 GLY D 161 1 14 HELIX 12 AB3 SER D 163 GLY D 184 1 22 HELIX 13 AB4 THR D 214 LYS D 220 1 7 HELIX 14 AB5 PHE D 225 GLY D 233 1 9 HELIX 15 AB6 GLY D 233 TYR D 242 1 10 HELIX 16 AB7 ALA D 272 GLN D 278 1 7 HELIX 17 AB8 GLY D 302 GLY D 315 1 14 HELIX 18 AB9 THR D 317 ILE D 321 5 5 HELIX 19 AC1 PHE D 330 ASN D 342 1 13 HELIX 20 AC2 PRO D 344 LEU D 348 5 5 HELIX 21 AC3 GLY D 353 GLY D 358 1 6 HELIX 22 AC4 PRO D 360 ARG D 379 1 20 HELIX 23 AC5 ASN A 31 GLU A 48 1 18 HELIX 24 AC6 ASP A 69 GLN A 75 1 7 HELIX 25 AC7 ARG A 77 GLU A 79 5 3 HELIX 26 AC8 ASP A 80 THR A 100 1 21 HELIX 27 AC9 GLY A 116 ALA A 123 1 8 HELIX 28 AD1 PRO A 140 GLY A 145 5 6 HELIX 29 AD2 GLY A 151 GLY A 161 1 11 HELIX 30 AD3 GLY A 161 VAL A 169 1 9 HELIX 31 AD4 LYS A 177 GLY A 185 1 9 HELIX 32 AD5 GLU A 196 ASN A 212 1 17 HELIX 33 AD6 GLN A 219 LYS A 223 5 5 HELIX 34 AD7 SER A 235 LEU A 242 1 8 HELIX 35 AD8 PRO A 243 LYS A 254 1 12 HELIX 36 AD9 MET A 258 GLN A 273 1 16 HELIX 37 AE1 ASP A 275 THR A 292 1 18 HELIX 38 AE2 GLY A 293 PHE A 304 1 12 HELIX 39 AE3 PHE A 304 ALA A 312 1 9 HELIX 40 AE4 GLY A 334 ALA A 347 1 14 HELIX 41 AE5 SER A 357 GLU A 377 1 21 HELIX 42 AE6 ARG A 385 ILE A 393 1 9 HELIX 43 AE7 ASP A 398 LYS A 403 5 6 HELIX 44 AE8 ASN A 415 GLU A 425 1 11 HELIX 45 AE9 PRO A 444 ALA A 449 1 6 HELIX 46 AF1 THR A 450 VAL A 452 5 3 HELIX 47 AF2 ARG A 454 GLU A 456 5 3 HELIX 48 AF3 SER A 482 ILE A 496 1 15 HELIX 49 AF4 PHE A 510 GLY A 529 1 20 HELIX 50 AF5 GLU A 531 GLY A 543 1 13 HELIX 51 AF6 PRO A 547 LEU A 555 1 9 HELIX 52 AF7 ASN A 556 ALA A 574 1 19 HELIX 53 AF8 ALA A 583 LEU A 593 1 11 HELIX 54 AF9 GLY A 618 LYS A 624 1 7 HELIX 55 AG1 PRO A 631 GLU A 653 1 23 HELIX 56 AG2 SER A 658 GLY A 671 1 14 HELIX 57 AG3 PRO A 673 GLY A 677 5 5 HELIX 58 AG4 ALA A 680 GLY A 685 1 6 HELIX 59 AG5 GLY A 693 GLY A 709 1 17 HELIX 60 AG6 ASP A 710 LEU A 713 5 4 SHEET 1 AA1 5 GLY D 16 LYS D 17 0 SHEET 2 AA1 5 VAL D 261 SER D 271 -1 O ASP D 262 N GLY D 16 SHEET 3 AA1 5 LEU D 113 SER D 121 -1 N ALA D 116 O VAL D 267 SHEET 4 AA1 5 ILE D 51 GLY D 57 1 N SER D 52 O LEU D 113 SHEET 5 AA1 5 VAL D 86 LEU D 88 1 O VAL D 86 N LEU D 56 SHEET 1 AA2 7 GLY D 16 LYS D 17 0 SHEET 2 AA2 7 VAL D 261 SER D 271 -1 O ASP D 262 N GLY D 16 SHEET 3 AA2 7 ALA D 5 ARG D 12 -1 N PHE D 7 O GLY D 270 SHEET 4 AA2 7 ALA D 284 GLY D 293 -1 O ALA D 284 N ILE D 7A SHEET 5 AA2 7 MET D 394 ARG D 402 -1 O ILE D 399 N VAL D 287 SHEET 6 AA2 7 ARG D 383 CYS D 389 -1 N ILE D 386 O THR D 398 SHEET 7 AA2 7 LEU D 323 LEU D 326 1 N GLU D 325 O LEU D 385 SHEET 1 AA3 2 VAL D 194 ARG D 195 0 SHEET 2 AA3 2 LEU D 201 LEU D 203 -1 O ILE D 202 N VAL D 194 SHEET 1 AA4 6 ILE A 6 GLN A 7 0 SHEET 2 AA4 6 ILE A 15 MET A 20 -1 O THR A 19 N GLN A 7 SHEET 3 AA4 6 GLY A 54 SER A 59 1 O GLY A 54 N VAL A 16 SHEET 4 AA4 6 VAL A 105 ILE A 109 1 O ALA A 108 N VAL A 57 SHEET 5 AA4 6 HIS A 126 ALA A 130 1 O ILE A 128 N ALA A 107 SHEET 6 AA4 6 GLU A 189 VAL A 191 1 O GLU A 189 N ALA A 129 SHEET 1 AA5 4 PHE A 65 GLY A 67 0 SHEET 2 AA5 4 ALA A 113 GLY A 115 1 O LEU A 114 N PHE A 65 SHEET 3 AA5 4 LEU A 137 GLY A 138 1 O GLY A 138 N GLY A 115 SHEET 4 AA5 4 ARG A 175 PHE A 176 -1 O PHE A 176 N LEU A 137 SHEET 1 AA6 7 VAL A 351 LYS A 354 0 SHEET 2 AA6 7 ILE A 328 LEU A 331 1 N ILE A 328 O VAL A 352 SHEET 3 AA6 7 PHE A 407 GLU A 410 1 O PHE A 407 N GLY A 329 SHEET 4 AA6 7 ILE A 435 SER A 438 1 O GLY A 437 N VAL A 408 SHEET 5 AA6 7 PHE A 458 HIS A 462 1 O ILE A 459 N LEU A 436 SHEET 6 AA6 7 LEU A 472 LYS A 477 -1 O GLU A 474 N HIS A 462 SHEET 7 AA6 7 THR A 499 ASN A 504 1 O VAL A 503 N LYS A 477 SHEET 1 AA7 2 TYR A 605 ALA A 608 0 SHEET 2 AA7 2 LYS A 611 LEU A 615 -1 O SER A 613 N GLU A 606 SHEET 1 AA8 2 SER A 687 GLY A 688 0 SHEET 2 AA8 2 GLY A 691 THR A 692 -1 O GLY A 691 N GLY A 688 LINK C PHE D 91 N CSO D 92 1555 1555 1.33 LINK C CSO D 92 N ALA D 93 1555 1555 1.33 CISPEP 1 SER A 465 PRO A 466 0 -5.77 CRYST1 102.016 205.868 133.804 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009802 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007474 0.00000