HEADER METAL BINDING PROTEIN 30-MAR-21 7O1O TITLE COMPLEX-B BOUND [FEFE]-HYDROGENASE MATURASE HYDE FROMT. MARITIMA TITLE 2 (AUXILIARY CLUSTER DELETED VARIANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: [FEFE] HYDROGENASE MATURASE SUBUNIT HYDE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: TM_1269, THEMA_07990, TMARI_1274; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS RADICAL SAM PROTEIN; HYDROGENASE MATURASE; METALLOPROTEIN, METAL KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.ROHAC,L.MARTIN,L.LIU,D.BASU,L.TAO,R.D.BRITT,T.RAUCHFUSS,Y.NICOLET REVDAT 4 31-JAN-24 7O1O 1 REMARK REVDAT 3 15-NOV-23 7O1O 1 ATOM REVDAT 2 18-AUG-21 7O1O 1 JRNL REMARK REVDAT 1 26-MAY-21 7O1O 0 JRNL AUTH R.ROHAC,L.MARTIN,L.LIU,D.BASU,L.TAO,R.D.BRITT,T.B.RAUCHFUSS, JRNL AUTH 2 Y.NICOLET JRNL TITL CRYSTAL STRUCTURE OF THE [FEFE]-HYDROGENASE MATURASE HYDE JRNL TITL 2 BOUND TO COMPLEX-B. JRNL REF J.AM.CHEM.SOC. V. 143 8499 2021 JRNL REFN ESSN 1520-5126 JRNL PMID 34048236 JRNL DOI 10.1021/JACS.1C03367 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 102038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3500 - 3.8700 1.00 3490 184 0.1307 0.1628 REMARK 3 2 3.8700 - 3.0700 1.00 3356 177 0.1094 0.1347 REMARK 3 3 3.0700 - 2.6800 1.00 3326 175 0.1162 0.1391 REMARK 3 4 2.6800 - 2.4400 1.00 3291 173 0.1142 0.1290 REMARK 3 5 2.4400 - 2.2600 1.00 3287 173 0.1125 0.1250 REMARK 3 6 2.2600 - 2.1300 1.00 3275 173 0.1080 0.1311 REMARK 3 7 2.1300 - 2.0200 1.00 3254 171 0.1148 0.1483 REMARK 3 8 2.0200 - 1.9400 1.00 3255 171 0.1113 0.1404 REMARK 3 9 1.9400 - 1.8600 1.00 3249 171 0.1160 0.1339 REMARK 3 10 1.8600 - 1.8000 1.00 3275 173 0.1163 0.1450 REMARK 3 11 1.8000 - 1.7400 1.00 3242 170 0.1140 0.1361 REMARK 3 12 1.7400 - 1.6900 1.00 3229 170 0.1139 0.1326 REMARK 3 13 1.6900 - 1.6500 1.00 3248 171 0.1136 0.1316 REMARK 3 14 1.6500 - 1.6100 1.00 3214 168 0.1202 0.1495 REMARK 3 15 1.6100 - 1.5700 1.00 3250 172 0.1241 0.1565 REMARK 3 16 1.5700 - 1.5400 1.00 3243 170 0.1254 0.1658 REMARK 3 17 1.5400 - 1.5100 1.00 3212 169 0.1376 0.1565 REMARK 3 18 1.5100 - 1.4800 1.00 3227 170 0.1523 0.1761 REMARK 3 19 1.4800 - 1.4500 1.00 3232 170 0.1678 0.2169 REMARK 3 20 1.4500 - 1.4300 1.00 3215 170 0.1762 0.1999 REMARK 3 21 1.4300 - 1.4000 1.00 3182 167 0.1865 0.1810 REMARK 3 22 1.4000 - 1.3800 1.00 3217 169 0.1919 0.2076 REMARK 3 23 1.3800 - 1.3600 0.99 3200 167 0.2035 0.2191 REMARK 3 24 1.3600 - 1.3400 0.99 3201 169 0.2147 0.2412 REMARK 3 25 1.3400 - 1.3200 1.00 3211 169 0.2239 0.2691 REMARK 3 26 1.3200 - 1.3100 0.99 3188 168 0.2425 0.2569 REMARK 3 27 1.3100 - 1.2900 0.99 3202 167 0.2588 0.2670 REMARK 3 28 1.2900 - 1.2800 0.99 3189 168 0.2827 0.2859 REMARK 3 29 1.2800 - 1.2600 0.98 3120 164 0.3087 0.3006 REMARK 3 30 1.2600 - 1.2500 0.89 2858 151 0.3687 0.3653 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -9 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5310 15.0265 -16.6702 REMARK 3 T TENSOR REMARK 3 T11: 0.1244 T22: 0.2071 REMARK 3 T33: 0.2008 T12: -0.0162 REMARK 3 T13: -0.0215 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 4.6952 L22: 0.6838 REMARK 3 L33: 3.1308 L12: -0.9361 REMARK 3 L13: -3.1169 L23: 0.6611 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: -0.0615 S13: 0.2053 REMARK 3 S21: -0.0439 S22: 0.0133 S23: -0.2174 REMARK 3 S31: -0.0574 S32: 0.3201 S33: -0.0569 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4687 15.6994 -18.2936 REMARK 3 T TENSOR REMARK 3 T11: 0.1391 T22: 0.1399 REMARK 3 T33: 0.1392 T12: 0.0016 REMARK 3 T13: 0.0018 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.0734 L22: 0.5550 REMARK 3 L33: 1.3840 L12: -0.1417 REMARK 3 L13: -0.0113 L23: -0.0673 REMARK 3 S TENSOR REMARK 3 S11: -0.0211 S12: -0.0167 S13: -0.0025 REMARK 3 S21: 0.0026 S22: 0.0182 S23: 0.0638 REMARK 3 S31: -0.0233 S32: -0.2312 S33: -0.0118 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3532 25.8317 -25.0331 REMARK 3 T TENSOR REMARK 3 T11: 0.1939 T22: 0.1241 REMARK 3 T33: 0.1604 T12: 0.0050 REMARK 3 T13: 0.0002 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 1.3728 L22: 0.4544 REMARK 3 L33: 2.3110 L12: -0.2745 REMARK 3 L13: -0.7777 L23: -0.0007 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: 0.0675 S13: 0.1416 REMARK 3 S21: -0.0597 S22: -0.0386 S23: -0.0225 REMARK 3 S31: -0.2707 S32: -0.0070 S33: -0.0277 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7843 12.4788 -15.7000 REMARK 3 T TENSOR REMARK 3 T11: 0.1600 T22: 0.1291 REMARK 3 T33: 0.1499 T12: 0.0046 REMARK 3 T13: -0.0046 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.9489 L22: 0.3898 REMARK 3 L33: 0.9945 L12: -0.1562 REMARK 3 L13: -0.0700 L23: -0.0691 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: -0.0484 S13: -0.0233 REMARK 3 S21: -0.0246 S22: -0.0271 S23: -0.0162 REMARK 3 S31: 0.0333 S32: 0.0139 S33: 0.0181 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O1O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114989. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102038 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3CIW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG; LISO4; TRIS PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.71000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.71000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 347 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A -4 CD OE1 NE2 REMARK 470 LYS A -1 CD CE NZ REMARK 470 LYS A 9 NZ REMARK 470 LYS A 315 CE NZ REMARK 470 LYS A 325 CD CE NZ REMARK 470 LYS A 333 CD CE NZ REMARK 470 ARG A 336 CD NE CZ NH1 NH2 REMARK 470 THR A 346 OG1 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 150 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE FE2 A 402 C CYN A 405 1.72 REMARK 500 FE FE2 A 402 C CMO A 404 1.78 REMARK 500 FE FE2 A 402 C CMO A 403 1.80 REMARK 500 O HOH A 806 O HOH A 811 1.94 REMARK 500 O3 PO4 A 412 O HOH A 501 2.07 REMARK 500 OE1 GLN A 304 O HOH A 502 2.11 REMARK 500 O HOH A 629 O HOH A 856 2.12 REMARK 500 OD2 ASP A 49 O HOH A 503 2.12 REMARK 500 O HOH A 796 O HOH A 837 2.14 REMARK 500 O HOH A 725 O HOH A 780 2.15 REMARK 500 O HOH A 662 O HOH A 763 2.16 REMARK 500 O HOH A 894 O HOH A 929 2.17 REMARK 500 O HOH A 511 O HOH A 603 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 603 O HOH A 820 2555 1.65 REMARK 500 O HOH A 863 O HOH A 891 4455 1.75 REMARK 500 O HOH A 787 O HOH A 831 4454 1.79 REMARK 500 O HOH A 924 O HOH A 924 2555 1.93 REMARK 500 O HOH A 820 O HOH A 896 2555 1.99 REMARK 500 O HOH A 914 O HOH A 927 4455 2.02 REMARK 500 O HOH A 837 O HOH A 924 2555 2.07 REMARK 500 O HOH A 907 O HOH A 920 2555 2.07 REMARK 500 O1 PO4 A 412 O HOH A 615 2555 2.10 REMARK 500 O HOH A 509 O HOH A 933 4554 2.14 REMARK 500 O4 PO4 A 413 O HOH A 535 4554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 279 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 15 56.86 -94.77 REMARK 500 ASN A 27 69.51 -112.39 REMARK 500 GLU A 161 -62.30 77.32 REMARK 500 THR A 175 -154.14 -152.18 REMARK 500 ALA A 196 -152.41 -119.78 REMARK 500 ASN A 288 11.93 -143.35 REMARK 500 ASP A 337 -159.03 -131.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 926 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 927 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 928 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 929 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 930 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A 931 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 932 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH A 933 DISTANCE = 7.42 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 415 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 63 SG REMARK 620 2 SF4 A 415 S1 103.8 REMARK 620 3 SF4 A 415 S3 116.1 106.1 REMARK 620 4 SF4 A 415 S4 119.7 104.7 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 415 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 67 SG REMARK 620 2 SF4 A 415 S1 117.3 REMARK 620 3 SF4 A 415 S2 116.2 103.4 REMARK 620 4 SF4 A 415 S4 108.1 104.9 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 415 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 70 SG REMARK 620 2 SF4 A 415 S2 109.3 REMARK 620 3 SF4 A 415 S3 121.2 104.4 REMARK 620 4 SF4 A 415 S4 110.1 106.3 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 401 N REMARK 620 2 CYS A 401 SG 86.2 REMARK 620 3 CYS A 401 OXT 75.6 84.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 415 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SAH A 408 N REMARK 620 2 SF4 A 415 S1 98.9 REMARK 620 3 SF4 A 415 S2 159.6 98.1 REMARK 620 4 SF4 A 415 S3 89.1 100.8 98.7 REMARK 620 5 SAH A 408 OXT 71.3 97.3 95.4 155.2 REMARK 620 N 1 2 3 4 DBREF 7O1O A 2 345 UNP Q9X0Z6 HYDE_THEMA 2 345 SEQADV 7O1O MET A -9 UNP Q9X0Z6 INITIATING METHIONINE SEQADV 7O1O TRP A -8 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1O SER A -7 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1O HIS A -6 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1O PRO A -5 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1O GLN A -4 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1O PHE A -3 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1O GLU A -2 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1O LYS A -1 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1O ALA A 0 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1O SER A 1 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1O SER A 311 UNP Q9X0Z6 CYS 311 ENGINEERED MUTATION SEQADV 7O1O SER A 319 UNP Q9X0Z6 CYS 319 ENGINEERED MUTATION SEQADV 7O1O SER A 322 UNP Q9X0Z6 CYS 322 ENGINEERED MUTATION SEQADV 7O1O THR A 346 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1O VAL A 347 UNP Q9X0Z6 EXPRESSION TAG SEQRES 1 A 357 MET TRP SER HIS PRO GLN PHE GLU LYS ALA SER THR GLY SEQRES 2 A 357 ARG GLU ILE LEU GLU LYS LEU GLU ARG ARG GLU PHE THR SEQRES 3 A 357 ARG GLU VAL LEU LYS GLU ALA LEU SER ILE ASN ASP ARG SEQRES 4 A 357 GLY PHE ASN GLU ALA LEU PHE LYS LEU ALA ASP GLU ILE SEQRES 5 A 357 ARG ARG LYS TYR VAL GLY ASP GLU VAL HIS ILE ARG ALA SEQRES 6 A 357 ILE ILE GLU PHE SER ASN VAL CYS ARG LYS ASN CYS LEU SEQRES 7 A 357 TYR CYS GLY LEU ARG ARG ASP ASN LYS ASN LEU LYS ARG SEQRES 8 A 357 TYR ARG MET THR PRO GLU GLU ILE VAL GLU ARG ALA ARG SEQRES 9 A 357 LEU ALA VAL GLN PHE GLY ALA LYS THR ILE VAL LEU GLN SEQRES 10 A 357 SER GLY GLU ASP PRO TYR TYR MET PRO ASP VAL ILE SER SEQRES 11 A 357 ASP ILE VAL LYS GLU ILE LYS LYS MET GLY VAL ALA VAL SEQRES 12 A 357 THR LEU SER LEU GLY GLU TRP PRO ARG GLU TYR TYR GLU SEQRES 13 A 357 LYS TRP LYS GLU ALA GLY ALA ASP ARG TYR LEU LEU ARG SEQRES 14 A 357 HIS GLU THR ALA ASN PRO VAL LEU HIS ARG LYS LEU ARG SEQRES 15 A 357 PRO ASP THR SER PHE GLU ASN ARG LEU ASN CYS LEU LEU SEQRES 16 A 357 THR LEU LYS GLU LEU GLY TYR GLU THR GLY ALA GLY SER SEQRES 17 A 357 MET VAL GLY LEU PRO GLY GLN THR ILE ASP ASP LEU VAL SEQRES 18 A 357 ASP ASP LEU LEU PHE LEU LYS GLU HIS ASP PHE ASP MET SEQRES 19 A 357 VAL GLY ILE GLY PRO PHE ILE PRO HIS PRO ASP THR PRO SEQRES 20 A 357 LEU ALA ASN GLU LYS LYS GLY ASP PHE THR LEU THR LEU SEQRES 21 A 357 LYS MET VAL ALA LEU THR ARG ILE LEU LEU PRO ASP SER SEQRES 22 A 357 ASN ILE PRO ALA THR THR ALA MET GLY THR ILE VAL PRO SEQRES 23 A 357 GLY GLY ARG GLU ILE THR LEU ARG CYS GLY ALA ASN VAL SEQRES 24 A 357 ILE MET PRO ASN TRP THR PRO SER PRO TYR ARG GLN LEU SEQRES 25 A 357 TYR GLN LEU TYR PRO GLY LYS ILE SER VAL PHE GLU LYS SEQRES 26 A 357 ASP THR ALA SER ILE PRO SER VAL MET LYS MET ILE GLU SEQRES 27 A 357 LEU LEU GLY ARG LYS PRO GLY ARG ASP TRP GLY GLY ARG SEQRES 28 A 357 LYS ARG VAL PHE THR VAL HET CYS A 401 10 HET FE2 A 402 1 HET CMO A 403 2 HET CMO A 404 2 HET CYN A 405 2 HET PYR A 406 9 HET GOL A 407 12 HET SAH A 408 45 HET PO4 A 409 5 HET PO4 A 410 5 HET PO4 A 411 10 HET PO4 A 412 5 HET PO4 A 413 5 HET CL A 414 1 HET SF4 A 415 8 HETNAM CYS CYSTEINE HETNAM FE2 FE (II) ION HETNAM CMO CARBON MONOXIDE HETNAM CYN CYANIDE ION HETNAM PYR PYRUVIC ACID HETNAM GOL GLYCEROL HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM SF4 IRON/SULFUR CLUSTER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CYS C3 H7 N O2 S FORMUL 3 FE2 FE 2+ FORMUL 4 CMO 2(C O) FORMUL 6 CYN C N 1- FORMUL 7 PYR C3 H4 O3 FORMUL 8 GOL C3 H8 O3 FORMUL 9 SAH C14 H20 N6 O5 S FORMUL 10 PO4 5(O4 P 3-) FORMUL 15 CL CL 1- FORMUL 16 SF4 FE4 S4 FORMUL 17 HOH *433(H2 O) HELIX 1 AA1 GLU A -2 ARG A 12 1 15 HELIX 2 AA2 THR A 16 ILE A 26 1 11 HELIX 3 AA3 ASP A 28 VAL A 47 1 20 HELIX 4 AA4 THR A 85 PHE A 99 1 15 HELIX 5 AA5 ASP A 111 MET A 115 5 5 HELIX 6 AA6 PRO A 116 LYS A 128 1 13 HELIX 7 AA7 PRO A 141 ALA A 151 1 11 HELIX 8 AA8 ASN A 164 ARG A 172 1 9 HELIX 9 AA9 SER A 176 LEU A 190 1 15 HELIX 10 AB1 THR A 206 ASP A 221 1 16 HELIX 11 AB2 ASP A 245 LEU A 260 1 16 HELIX 12 AB3 THR A 268 VAL A 275 1 8 HELIX 13 AB4 GLY A 277 ARG A 284 1 8 HELIX 14 AB5 TYR A 299 TYR A 303 5 5 HELIX 15 AB6 ALA A 318 LEU A 330 1 13 SHEET 1 AA1 8 MET A 224 VAL A 225 0 SHEET 2 AA1 8 GLU A 193 ALA A 196 1 N ALA A 196 O MET A 224 SHEET 3 AA1 8 ARG A 155 LEU A 157 1 N TYR A 156 O GLY A 195 SHEET 4 AA1 8 ALA A 132 SER A 136 1 N LEU A 135 O LEU A 157 SHEET 5 AA1 8 THR A 103 SER A 108 1 N LEU A 106 O THR A 134 SHEET 6 AA1 8 GLU A 50 SER A 60 1 N ALA A 55 O VAL A 105 SHEET 7 AA1 8 VAL A 289 ILE A 290 1 O ILE A 290 N HIS A 52 SHEET 8 AA1 8 PRO A 266 ALA A 267 1 N ALA A 267 O VAL A 289 SHEET 1 AA2 7 MET A 224 VAL A 225 0 SHEET 2 AA2 7 GLU A 193 ALA A 196 1 N ALA A 196 O MET A 224 SHEET 3 AA2 7 ARG A 155 LEU A 157 1 N TYR A 156 O GLY A 195 SHEET 4 AA2 7 ALA A 132 SER A 136 1 N LEU A 135 O LEU A 157 SHEET 5 AA2 7 THR A 103 SER A 108 1 N LEU A 106 O THR A 134 SHEET 6 AA2 7 GLU A 50 SER A 60 1 N ALA A 55 O VAL A 105 SHEET 7 AA2 7 LYS A 333 PRO A 334 1 O LYS A 333 N VAL A 51 SHEET 1 AA3 2 MET A 199 VAL A 200 0 SHEET 2 AA3 2 GLY A 228 PRO A 229 1 O GLY A 228 N VAL A 200 LINK SG CYS A 63 FE2 SF4 A 415 1555 1555 2.27 LINK SG CYS A 67 FE3 SF4 A 415 1555 1555 2.32 LINK SG CYS A 70 FE1 SF4 A 415 1555 1555 2.28 LINK N CYS A 401 FE FE2 A 402 1555 1555 2.04 LINK SG CYS A 401 FE FE2 A 402 1555 1555 2.30 LINK OXT CYS A 401 FE FE2 A 402 1555 1555 2.11 LINK N SAH A 408 FE4 SF4 A 415 1555 1555 2.24 LINK OXT SAH A 408 FE4 SF4 A 415 1555 1555 2.18 CISPEP 1 MET A 115 PRO A 116 0 -3.69 CISPEP 2 SER A 297 PRO A 298 0 2.90 CRYST1 63.420 81.760 70.420 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015768 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014201 0.00000