HEADER METAL BINDING PROTEIN 30-MAR-21 7O1S TITLE COMPLEX-B BOUND [FEFE]-HYDROGENASE MATURASE HYDE FROMT. MARITIMA TITLE 2 (WILD-TYPE PROTEIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: [FEFE] HYDROGENASE MATURASE SUBUNIT HYDE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: TM_1269, THEMA_07990, TMARI_1274; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS RADICAL SAM PROTEIN; HYDROGENASE MATURASE; METALLOPROTEIN, METAL KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.ROHAC,L.MARTIN,L.LIU,D.BASU,L.TAO,R.D.BRITT,T.RAUCHFUSS,Y.NICOLET REVDAT 3 31-JAN-24 7O1S 1 REMARK REVDAT 2 18-AUG-21 7O1S 1 JRNL REVDAT 1 26-MAY-21 7O1S 0 JRNL AUTH R.ROHAC,L.MARTIN,L.LIU,D.BASU,L.TAO,R.D.BRITT,T.B.RAUCHFUSS, JRNL AUTH 2 Y.NICOLET JRNL TITL CRYSTAL STRUCTURE OF THE [FEFE]-HYDROGENASE MATURASE HYDE JRNL TITL 2 BOUND TO COMPLEX-B. JRNL REF J.AM.CHEM.SOC. V. 143 8499 2021 JRNL REFN ESSN 1520-5126 JRNL PMID 34048236 JRNL DOI 10.1021/JACS.1C03367 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.090 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.8 REMARK 3 NUMBER OF REFLECTIONS : 102006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 5112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0500 - 4.3300 0.98 4247 188 0.1420 0.1619 REMARK 3 2 4.3200 - 3.4300 0.99 4284 201 0.1279 0.1569 REMARK 3 3 3.4300 - 3.0000 0.99 4293 213 0.1501 0.1460 REMARK 3 4 3.0000 - 2.7300 0.99 4304 187 0.1508 0.1766 REMARK 3 5 2.7300 - 2.5300 0.99 4282 248 0.1547 0.1633 REMARK 3 6 2.5300 - 2.3800 1.00 4287 237 0.1509 0.1815 REMARK 3 7 2.3800 - 2.2600 1.00 4270 252 0.1445 0.1793 REMARK 3 8 2.2600 - 2.1600 1.00 4239 278 0.1469 0.1798 REMARK 3 9 2.1600 - 2.0800 1.00 4349 242 0.1456 0.1732 REMARK 3 10 2.0800 - 2.0100 1.00 4317 222 0.1488 0.1865 REMARK 3 11 2.0100 - 1.9500 1.00 4299 233 0.1561 0.1956 REMARK 3 12 1.9500 - 1.8900 1.00 4309 188 0.1681 0.1788 REMARK 3 13 1.8900 - 1.8400 1.00 4383 209 0.1622 0.1938 REMARK 3 14 1.8400 - 1.8000 1.00 4306 247 0.1693 0.2188 REMARK 3 15 1.8000 - 1.7500 0.99 4223 240 0.1804 0.2038 REMARK 3 16 1.7500 - 1.7200 0.97 4228 221 0.1822 0.1951 REMARK 3 17 1.7200 - 1.6800 0.92 3974 219 0.1898 0.2536 REMARK 3 18 1.6800 - 1.6500 0.87 3678 212 0.1967 0.2222 REMARK 3 19 1.6500 - 1.6200 0.81 3506 207 0.2135 0.2323 REMARK 3 20 1.6200 - 1.5900 0.73 3153 169 0.2219 0.2776 REMARK 3 21 1.5900 - 1.5700 0.66 2868 143 0.2413 0.2918 REMARK 3 22 1.5700 - 1.5400 0.58 2494 132 0.2522 0.2577 REMARK 3 23 1.5400 - 1.5200 0.50 2176 106 0.2615 0.2594 REMARK 3 24 1.5200 - 1.5000 0.43 1841 110 0.2674 0.2734 REMARK 3 25 1.5000 - 1.4800 0.36 1553 73 0.2738 0.4322 REMARK 3 26 1.4800 - 1.4600 0.28 1209 56 0.2779 0.3477 REMARK 3 27 1.4600 - 1.4400 0.21 913 40 0.3160 0.3123 REMARK 3 28 1.4400 - 1.4300 0.13 536 32 0.3603 0.3373 REMARK 3 29 1.4300 - 1.4100 0.07 300 5 0.3329 0.5066 REMARK 3 30 1.4100 - 1.3900 0.02 73 2 0.3312 0.1810 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.8183 -13.7644 -3.3902 REMARK 3 T TENSOR REMARK 3 T11: 0.5495 T22: 0.2649 REMARK 3 T33: 0.3225 T12: 0.1479 REMARK 3 T13: 0.0803 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 3.1309 L22: 3.7792 REMARK 3 L33: 2.7164 L12: 0.1099 REMARK 3 L13: -0.3169 L23: 0.6849 REMARK 3 S TENSOR REMARK 3 S11: -0.1119 S12: 0.1001 S13: -0.4559 REMARK 3 S21: -0.5397 S22: -0.0414 S23: -0.3418 REMARK 3 S31: 0.8627 S32: 0.5627 S33: 0.0898 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2151 8.2398 12.4640 REMARK 3 T TENSOR REMARK 3 T11: 0.1192 T22: 0.1266 REMARK 3 T33: 0.1495 T12: -0.0328 REMARK 3 T13: -0.0230 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.9106 L22: 0.8081 REMARK 3 L33: 1.1816 L12: -0.3273 REMARK 3 L13: -0.3558 L23: 0.0397 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: -0.1257 S13: -0.0288 REMARK 3 S21: 0.0416 S22: 0.0246 S23: -0.0034 REMARK 3 S31: -0.0158 S32: 0.0787 S33: -0.0229 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5412 11.3100 16.0544 REMARK 3 T TENSOR REMARK 3 T11: 0.1185 T22: 0.1096 REMARK 3 T33: 0.1489 T12: -0.0165 REMARK 3 T13: -0.0059 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.6659 L22: 3.1066 REMARK 3 L33: 4.0501 L12: -0.5964 REMARK 3 L13: 0.4002 L23: -2.2303 REMARK 3 S TENSOR REMARK 3 S11: 0.0475 S12: -0.1483 S13: -0.0103 REMARK 3 S21: 0.0743 S22: 0.0922 S23: 0.2118 REMARK 3 S31: -0.0880 S32: -0.1963 S33: -0.1384 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3936 -3.7311 17.2643 REMARK 3 T TENSOR REMARK 3 T11: 0.1616 T22: 0.1144 REMARK 3 T33: 0.1504 T12: -0.0176 REMARK 3 T13: 0.0070 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 1.8166 L22: 1.7110 REMARK 3 L33: 1.9215 L12: -0.9067 REMARK 3 L13: 0.0450 L23: -0.4192 REMARK 3 S TENSOR REMARK 3 S11: -0.0570 S12: -0.1508 S13: -0.2726 REMARK 3 S21: 0.0081 S22: 0.0005 S23: 0.1050 REMARK 3 S31: 0.3138 S32: 0.0433 S33: 0.0268 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6360 0.6991 9.0273 REMARK 3 T TENSOR REMARK 3 T11: 0.1369 T22: 0.1342 REMARK 3 T33: 0.1446 T12: 0.0088 REMARK 3 T13: -0.0125 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.8345 L22: 0.6938 REMARK 3 L33: 1.4546 L12: -0.0375 REMARK 3 L13: -0.2313 L23: -0.2021 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: -0.1327 S13: -0.1009 REMARK 3 S21: -0.0054 S22: -0.0229 S23: -0.0500 REMARK 3 S31: 0.1543 S32: 0.1749 S33: 0.0505 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 300 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7809 17.7375 10.4527 REMARK 3 T TENSOR REMARK 3 T11: 0.2069 T22: 0.2500 REMARK 3 T33: 0.2039 T12: -0.0304 REMARK 3 T13: -0.0229 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.5156 L22: 0.9250 REMARK 3 L33: 3.5960 L12: 0.1250 REMARK 3 L13: -0.7251 L23: -1.3060 REMARK 3 S TENSOR REMARK 3 S11: 0.0655 S12: -0.2570 S13: 0.1704 REMARK 3 S21: 0.2315 S22: -0.0377 S23: -0.0822 REMARK 3 S31: -0.2304 S32: 0.3957 S33: -0.0021 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4972 3.1664 -4.0802 REMARK 3 T TENSOR REMARK 3 T11: 0.2294 T22: 0.1665 REMARK 3 T33: 0.1971 T12: -0.0101 REMARK 3 T13: -0.0258 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 2.6718 L22: 0.4261 REMARK 3 L33: 2.4417 L12: -0.0235 REMARK 3 L13: -0.5359 L23: 1.0024 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: 0.2604 S13: -0.1917 REMARK 3 S21: 0.0016 S22: -0.0528 S23: 0.0938 REMARK 3 S31: 0.4018 S32: -0.1737 S33: 0.0767 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102006 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 43.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3CIW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, LISO4; TRIS PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.63500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.05500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.05500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.63500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 SD CE REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 8 CD OE1 OE2 REMARK 470 LYS A 9 NZ REMARK 470 ARG A 13 CZ NH1 NH2 REMARK 470 GLU A 18 CD OE1 OE2 REMARK 470 LYS A 37 CD CE NZ REMARK 470 ARG A 44 CZ NH1 NH2 REMARK 470 LYS A 77 CE NZ REMARK 470 LYS A 80 CD CE NZ REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 GLU A 150 CD OE1 OE2 REMARK 470 ARG A 169 NE CZ NH1 NH2 REMARK 470 LYS A 170 CD CE NZ REMARK 470 LYS A 188 CD CE NZ REMARK 470 LYS A 242 CE NZ REMARK 470 LYS A 315 CE NZ REMARK 470 LYS A 333 CD CE NZ REMARK 470 ARG A 336 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE FE2 A 402 C CYN A 405 1.71 REMARK 500 FE FE2 A 402 C CMO A 403 1.83 REMARK 500 FE FE2 A 402 C CMO A 404 1.84 REMARK 500 O HOH A 724 O HOH A 807 1.94 REMARK 500 NE ARG A 13 O HOH A 501 2.01 REMARK 500 O HOH A 626 O HOH A 742 2.07 REMARK 500 O HOH A 678 O HOH A 683 2.08 REMARK 500 O HIS A 220 O HOH A 502 2.09 REMARK 500 O HOH A 731 O HOH A 778 2.13 REMARK 500 NZ LYS A 147 O HOH A 503 2.15 REMARK 500 O HOH A 696 O HOH A 805 2.18 REMARK 500 O HOH A 767 O HOH A 852 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 802 O HOH A 803 3745 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 15 59.94 -96.54 REMARK 500 ASN A 78 40.24 -91.72 REMARK 500 ASN A 78 38.09 -90.11 REMARK 500 GLU A 161 -61.81 71.91 REMARK 500 THR A 175 -151.27 -151.72 REMARK 500 ALA A 196 -151.65 -122.49 REMARK 500 ASP A 235 31.82 -99.86 REMARK 500 ASN A 288 10.48 -140.56 REMARK 500 CYS A 311 -15.43 80.60 REMARK 500 ASP A 337 -160.17 -127.34 REMARK 500 GLU A 346 -152.46 -118.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CPS A 412 REMARK 610 CPS A 413 REMARK 610 CPS A 414 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 409 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 63 SG REMARK 620 2 SF4 A 409 S1 105.3 REMARK 620 3 SF4 A 409 S3 117.5 103.0 REMARK 620 4 SF4 A 409 S4 119.3 104.5 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 409 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 67 SG REMARK 620 2 SF4 A 409 S1 119.5 REMARK 620 3 SF4 A 409 S2 116.2 102.4 REMARK 620 4 SF4 A 409 S4 106.9 104.7 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 409 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 70 SG REMARK 620 2 SF4 A 409 S2 111.6 REMARK 620 3 SF4 A 409 S3 120.5 103.4 REMARK 620 4 SF4 A 409 S4 109.1 105.9 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 406 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 279 NH2 REMARK 620 2 FES A 406 S1 130.2 REMARK 620 3 FES A 406 S2 157.3 72.4 REMARK 620 4 H2S A 408 S 84.7 89.2 94.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 406 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 311 SG REMARK 620 2 FES A 406 S1 109.6 REMARK 620 3 FES A 406 S2 109.8 104.2 REMARK 620 4 CYS A 319 SG 103.9 132.9 94.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 406 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 311 SG REMARK 620 2 FES A 406 S1 91.3 REMARK 620 3 FES A 406 S2 111.4 103.9 REMARK 620 4 CYS A 319 SG 106.2 138.3 104.2 REMARK 620 5 H2S A 407 S 119.3 86.3 128.0 52.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 406 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 322 SG REMARK 620 2 FES A 406 S1 115.1 REMARK 620 3 FES A 406 S2 115.6 103.5 REMARK 620 4 HOH A 769 O 107.7 103.7 110.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 401 N REMARK 620 2 CYS A 401 O 75.3 REMARK 620 3 CYS A 401 SG 85.7 86.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 409 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SAH A 415 N REMARK 620 2 SF4 A 409 S1 96.6 REMARK 620 3 SF4 A 409 S2 157.4 101.6 REMARK 620 4 SF4 A 409 S3 86.4 102.2 102.5 REMARK 620 5 SAH A 415 OXT 71.0 96.7 93.5 152.1 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7O1O RELATED DB: PDB REMARK 900 RELATED ID: 7O1P RELATED DB: PDB DBREF 7O1S A 1 348 UNP Q9X0Z6 HYDE_THEMA 1 348 SEQRES 1 A 348 MET THR GLY ARG GLU ILE LEU GLU LYS LEU GLU ARG ARG SEQRES 2 A 348 GLU PHE THR ARG GLU VAL LEU LYS GLU ALA LEU SER ILE SEQRES 3 A 348 ASN ASP ARG GLY PHE ASN GLU ALA LEU PHE LYS LEU ALA SEQRES 4 A 348 ASP GLU ILE ARG ARG LYS TYR VAL GLY ASP GLU VAL HIS SEQRES 5 A 348 ILE ARG ALA ILE ILE GLU PHE SER ASN VAL CYS ARG LYS SEQRES 6 A 348 ASN CYS LEU TYR CYS GLY LEU ARG ARG ASP ASN LYS ASN SEQRES 7 A 348 LEU LYS ARG TYR ARG MET THR PRO GLU GLU ILE VAL GLU SEQRES 8 A 348 ARG ALA ARG LEU ALA VAL GLN PHE GLY ALA LYS THR ILE SEQRES 9 A 348 VAL LEU GLN SER GLY GLU ASP PRO TYR TYR MET PRO ASP SEQRES 10 A 348 VAL ILE SER ASP ILE VAL LYS GLU ILE LYS LYS MET GLY SEQRES 11 A 348 VAL ALA VAL THR LEU SER LEU GLY GLU TRP PRO ARG GLU SEQRES 12 A 348 TYR TYR GLU LYS TRP LYS GLU ALA GLY ALA ASP ARG TYR SEQRES 13 A 348 LEU LEU ARG HIS GLU THR ALA ASN PRO VAL LEU HIS ARG SEQRES 14 A 348 LYS LEU ARG PRO ASP THR SER PHE GLU ASN ARG LEU ASN SEQRES 15 A 348 CYS LEU LEU THR LEU LYS GLU LEU GLY TYR GLU THR GLY SEQRES 16 A 348 ALA GLY SER MET VAL GLY LEU PRO GLY GLN THR ILE ASP SEQRES 17 A 348 ASP LEU VAL ASP ASP LEU LEU PHE LEU LYS GLU HIS ASP SEQRES 18 A 348 PHE ASP MET VAL GLY ILE GLY PRO PHE ILE PRO HIS PRO SEQRES 19 A 348 ASP THR PRO LEU ALA ASN GLU LYS LYS GLY ASP PHE THR SEQRES 20 A 348 LEU THR LEU LYS MET VAL ALA LEU THR ARG ILE LEU LEU SEQRES 21 A 348 PRO ASP SER ASN ILE PRO ALA THR THR ALA MET GLY THR SEQRES 22 A 348 ILE VAL PRO GLY GLY ARG GLU ILE THR LEU ARG CYS GLY SEQRES 23 A 348 ALA ASN VAL ILE MET PRO ASN TRP THR PRO SER PRO TYR SEQRES 24 A 348 ARG GLN LEU TYR GLN LEU TYR PRO GLY LYS ILE CYS VAL SEQRES 25 A 348 PHE GLU LYS ASP THR ALA CYS ILE PRO CYS VAL MET LYS SEQRES 26 A 348 MET ILE GLU LEU LEU GLY ARG LYS PRO GLY ARG ASP TRP SEQRES 27 A 348 GLY GLY ARG LYS ARG VAL PHE GLU THR VAL HET CYS A 401 7 HET FE2 A 402 1 HET CMO A 403 2 HET CMO A 404 2 HET CYN A 405 2 HET FES A 406 8 HET H2S A 407 1 HET H2S A 408 1 HET SF4 A 409 8 HET CPS A 410 42 HET CPS A 411 42 HET CPS A 412 29 HET CPS A 413 29 HET CPS A 414 50 HET SAH A 415 26 HET IOD A 416 2 HETNAM CYS CYSTEINE HETNAM FE2 FE (II) ION HETNAM CMO CARBON MONOXIDE HETNAM CYN CYANIDE ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM H2S HYDROSULFURIC ACID HETNAM SF4 IRON/SULFUR CLUSTER HETNAM CPS 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- HETNAM 2 CPS PROPANESULFONATE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM IOD IODIDE ION HETSYN H2S HYDROGEN SULFIDE HETSYN CPS CHAPS FORMUL 2 CYS C3 H7 N O2 S FORMUL 3 FE2 FE 2+ FORMUL 4 CMO 2(C O) FORMUL 6 CYN C N 1- FORMUL 7 FES FE2 S2 FORMUL 8 H2S 2(H2 S) FORMUL 10 SF4 FE4 S4 FORMUL 11 CPS 5(C32 H58 N2 O7 S) FORMUL 16 SAH C14 H20 N6 O5 S FORMUL 17 IOD I 1- FORMUL 18 HOH *357(H2 O) HELIX 1 AA1 THR A 2 ARG A 12 1 11 HELIX 2 AA2 THR A 16 ILE A 26 1 11 HELIX 3 AA3 ASP A 28 GLY A 48 1 21 HELIX 4 AA4 THR A 85 PHE A 99 1 15 HELIX 5 AA5 ASP A 111 MET A 115 5 5 HELIX 6 AA6 PRO A 116 LYS A 128 1 13 HELIX 7 AA7 PRO A 141 ALA A 151 1 11 HELIX 8 AA8 ASN A 164 ARG A 172 1 9 HELIX 9 AA9 SER A 176 LEU A 190 1 15 HELIX 10 AB1 THR A 206 ASP A 221 1 16 HELIX 11 AB2 ASP A 245 LEU A 260 1 16 HELIX 12 AB3 THR A 268 VAL A 275 1 8 HELIX 13 AB4 GLY A 277 ARG A 284 1 8 HELIX 14 AB5 TYR A 299 TYR A 303 5 5 HELIX 15 AB6 ALA A 318 LEU A 330 1 13 SHEET 1 AA1 7 MET A 224 VAL A 225 0 SHEET 2 AA1 7 GLU A 193 ALA A 196 1 N ALA A 196 O MET A 224 SHEET 3 AA1 7 ARG A 155 LEU A 157 1 N TYR A 156 O GLY A 195 SHEET 4 AA1 7 ALA A 132 SER A 136 1 N LEU A 135 O LEU A 157 SHEET 5 AA1 7 THR A 103 SER A 108 1 N ILE A 104 O THR A 134 SHEET 6 AA1 7 GLU A 50 SER A 60 1 N ALA A 55 O VAL A 105 SHEET 7 AA1 7 VAL A 289 ILE A 290 1 O ILE A 290 N HIS A 52 SHEET 1 AA2 7 MET A 224 VAL A 225 0 SHEET 2 AA2 7 GLU A 193 ALA A 196 1 N ALA A 196 O MET A 224 SHEET 3 AA2 7 ARG A 155 LEU A 157 1 N TYR A 156 O GLY A 195 SHEET 4 AA2 7 ALA A 132 SER A 136 1 N LEU A 135 O LEU A 157 SHEET 5 AA2 7 THR A 103 SER A 108 1 N ILE A 104 O THR A 134 SHEET 6 AA2 7 GLU A 50 SER A 60 1 N ALA A 55 O VAL A 105 SHEET 7 AA2 7 LYS A 333 PRO A 334 1 O LYS A 333 N VAL A 51 SHEET 1 AA3 2 MET A 199 VAL A 200 0 SHEET 2 AA3 2 GLY A 228 PRO A 229 1 O GLY A 228 N VAL A 200 LINK SG BCYS A 319 S BH2S A 407 1555 1555 2.01 LINK SG BCYS A 322 S BH2S A 408 1555 1555 2.01 LINK SG CYS A 63 FE2 SF4 A 409 1555 1555 2.26 LINK SG CYS A 67 FE3 SF4 A 409 1555 1555 2.33 LINK SG CYS A 70 FE1 SF4 A 409 1555 1555 2.27 LINK NH2 ARG A 279 FE2 BFES A 406 1555 1555 2.66 LINK SG ACYS A 311 FE1 AFES A 406 1555 1555 2.26 LINK SG BCYS A 311 FE1 BFES A 406 1555 1555 2.27 LINK SG ACYS A 319 FE1 AFES A 406 1555 1555 2.34 LINK SG BCYS A 319 FE1 BFES A 406 1555 1555 2.34 LINK SG ACYS A 322 FE2 AFES A 406 1555 1555 2.31 LINK N CYS A 401 FE FE2 A 402 1555 1555 2.10 LINK O CYS A 401 FE FE2 A 402 1555 1555 2.18 LINK SG CYS A 401 FE FE2 A 402 1555 1555 2.28 LINK FE1 BFES A 406 S BH2S A 407 1555 1555 2.25 LINK FE2 BFES A 406 S BH2S A 408 1555 1555 2.32 LINK FE2 AFES A 406 O HOH A 769 1555 1555 2.13 LINK FE4 SF4 A 409 N SAH A 415 1555 1555 2.45 LINK FE4 SF4 A 409 OXT SAH A 415 1555 1555 2.29 CISPEP 1 MET A 115 PRO A 116 0 -4.14 CISPEP 2 SER A 297 PRO A 298 0 3.54 CRYST1 51.270 79.700 86.110 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019505 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011613 0.00000