HEADER TRANSFERASE 30-MAR-21 7O2N TITLE CRYSTAL STRUCTURE OF B. SUBTILIS UGPASE YNGB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE YNGB; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALPHA-D-GLUCOSYL-1-PHOSPHATE URIDYLYLTRANSFERASE,UDP-GLUCOSE COMPND 5 PYROPHOSPHORYLASE,UDPGP,URIDINE DIPHOSPHOGLUCOSE PYROPHOSPHORYLASE; COMPND 6 EC: 2.7.7.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YNGB, BSU18180; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS UTP, GLUCOSE-1-PHOSPHATE, UDP-GLUCOSE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.WU REVDAT 3 31-JAN-24 7O2N 1 JRNL REMARK REVDAT 2 27-OCT-21 7O2N 1 JRNL REMARK REVDAT 1 14-APR-21 7O2N 0 JRNL AUTH C.WU JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERISATION OF THE BACILLUS JRNL TITL 2 SUBTILIS URIDYLYLTRANSFERASE YNGB JRNL REF PH.D.THESIS 2021 JRNL REFN JRNL DOI 10.25560/91986 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 985 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1341 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.4160 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4335 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.93000 REMARK 3 B22 (A**2) : -6.62000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.365 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.349 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.244 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4400 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5972 ; 1.672 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 576 ; 7.653 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;35.613 ;22.767 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 738 ;23.114 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;19.508 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 612 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3314 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 296 B 4 296 8033 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7O2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19691 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 56.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7B1R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM CITRATE TRIBASIC REMARK 280 MONOHYDRATE, 0.05M LITHIUM CITRATE TRIBASIC TETRAHYDRATE, 0.1M REMARK 280 SODIUM PHOSPHATE MONOBASIC MONOHYDRATE, 21% PEG6000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.07800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.15850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.48950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.15850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.07800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.48950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.07800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 79.48950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 90.15850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.48950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.07800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.15850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -90.15850 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 312 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 223 REMARK 465 GLY A 224 REMARK 465 ALA A 225 REMARK 465 GLY A 226 REMARK 465 ASN A 227 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 ARG B 223 REMARK 465 GLY B 224 REMARK 465 ALA B 225 REMARK 465 GLY B 226 REMARK 465 ASN B 227 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 88 CG CD1 CD2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLN A 92 CG CD OE1 NE2 REMARK 470 LEU A 111 CG CD1 CD2 REMARK 470 SER A 177 OG REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 GLU A 294 CG CD OE1 OE2 REMARK 470 ARG A 297 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 ARG B 63 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 LEU B 109 CG CD1 CD2 REMARK 470 LEU B 111 CG CD1 CD2 REMARK 470 HIS B 113 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 133 CG OD1 OD2 REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 TYR B 153 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 166 CG CD OE1 OE2 REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 TYR B 184 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 470 LEU B 218 CG CD1 CD2 REMARK 470 GLU B 228 CG CD OE1 OE2 REMARK 470 GLN B 230 CG CD OE1 NE2 REMARK 470 LEU B 235 CG CD1 CD2 REMARK 470 GLU B 237 CG CD OE1 OE2 REMARK 470 LYS B 241 CG CD CE NZ REMARK 470 LYS B 289 CG CD CE NZ REMARK 470 LYS B 293 CG CD CE NZ REMARK 470 GLU B 294 CG CD OE1 OE2 REMARK 470 ARG B 297 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 104 OD1 ASP B 67 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 17 CA - CB - OG1 ANGL. DEV. = -15.5 DEGREES REMARK 500 ASP B 258 CB - CA - C ANGL. DEV. = -20.7 DEGREES REMARK 500 ASP B 286 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 51.74 -148.50 REMARK 500 ILE A 33 -62.58 -99.51 REMARK 500 ASP A 35 10.99 -160.26 REMARK 500 GLU A 81 42.72 -86.96 REMARK 500 LYS A 82 -11.04 -164.84 REMARK 500 LYS A 84 84.26 -55.69 REMARK 500 ASP A 151 -35.87 -37.37 REMARK 500 VAL A 152 -66.90 -94.62 REMARK 500 LYS A 192 73.70 31.88 REMARK 500 MET A 205 62.18 -110.87 REMARK 500 GLU A 242 147.18 -170.71 REMARK 500 ALA B 12 50.13 -146.69 REMARK 500 ILE B 33 -60.34 -98.63 REMARK 500 ASP B 35 11.54 -160.70 REMARK 500 GLU B 81 35.49 -79.67 REMARK 500 LYS B 82 -7.01 -168.06 REMARK 500 LYS B 84 86.05 -60.01 REMARK 500 LEU B 111 0.16 -67.60 REMARK 500 ASP B 151 -32.19 -39.23 REMARK 500 VAL B 152 -72.60 -90.46 REMARK 500 PRO B 165 158.77 -49.82 REMARK 500 ASP B 167 -8.75 -144.63 REMARK 500 LYS B 192 74.28 32.77 REMARK 500 SER B 200 -179.05 -179.09 REMARK 500 MET B 205 67.63 -112.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 324 DISTANCE = 7.97 ANGSTROMS DBREF 7O2N A 2 297 UNP O31822 YNGB_BACSU 2 297 DBREF 7O2N B 2 297 UNP O31822 YNGB_BACSU 2 297 SEQRES 1 A 296 ARG LYS LYS VAL ARG LYS ALA VAL ILE PRO ALA ALA GLY SEQRES 2 A 296 LEU GLY THR ARG PHE LEU PRO ALA THR LYS ALA GLN PRO SEQRES 3 A 296 LYS GLU MET LEU PRO ILE VAL ASP LYS PRO ALA ILE GLN SEQRES 4 A 296 TYR ILE VAL GLU GLU ALA ALA GLU SER GLY ILE GLU ASP SEQRES 5 A 296 ILE LEU ILE ILE THR GLY ARG ASN LYS ARG SER ILE GLU SEQRES 6 A 296 ASP HIS PHE ASP ARG SER ALA GLU LEU GLU PHE ASN LEU SEQRES 7 A 296 ARG GLU LYS GLY LYS THR GLU THR LEU LYS GLU MET GLN SEQRES 8 A 296 GLN ILE ALA ASP LEU ALA ASN ILE HIS TYR ILE ARG GLN SEQRES 9 A 296 LYS GLU PRO LEU GLY LEU GLY HIS ALA VAL LEU CYS ALA SEQRES 10 A 296 GLU HIS PHE ILE GLY ASP GLU PRO PHE ALA VAL LEU LEU SEQRES 11 A 296 GLY ASP ASP ILE MET VAL SER GLU THR PRO ALA LEU ARG SEQRES 12 A 296 GLN LEU MET ASP VAL TYR ASP VAL TYR GLY THR GLU VAL SEQRES 13 A 296 VAL GLY VAL GLN SER VAL LEU PRO GLU ASP VAL SER LYS SEQRES 14 A 296 TYR GLY ILE ILE ASN THR SER GLY SER GLN GLY HIS VAL SEQRES 15 A 296 TYR GLU VAL ASN ASP LEU VAL GLU LYS PRO SER PRO GLU SEQRES 16 A 296 GLU ALA PRO SER GLU ILE ALA VAL MET GLY ARG TYR VAL SEQRES 17 A 296 LEU ASN SER SER ILE PHE SER VAL LEU LYS THR ILE GLY SEQRES 18 A 296 ARG GLY ALA GLY ASN GLU ILE GLN LEU THR ASP ALA LEU SEQRES 19 A 296 ARG GLU VAL CYS ARG LYS GLU PRO ILE HIS ALA ARG LEU SEQRES 20 A 296 LEU GLU GLY ASN ARG TYR ASP ILE GLY ASP LYS LEU GLY SEQRES 21 A 296 CYS PHE LYS ALA SER THR GLU ILE GLY LEU MET ARG PRO SEQRES 22 A 296 GLU MET ARG SER GLN LEU LEU ALA TYR LEU GLU ASP VAL SEQRES 23 A 296 ILE LYS ARG GLU THR LYS GLU MET LEU ARG SEQRES 1 B 296 ARG LYS LYS VAL ARG LYS ALA VAL ILE PRO ALA ALA GLY SEQRES 2 B 296 LEU GLY THR ARG PHE LEU PRO ALA THR LYS ALA GLN PRO SEQRES 3 B 296 LYS GLU MET LEU PRO ILE VAL ASP LYS PRO ALA ILE GLN SEQRES 4 B 296 TYR ILE VAL GLU GLU ALA ALA GLU SER GLY ILE GLU ASP SEQRES 5 B 296 ILE LEU ILE ILE THR GLY ARG ASN LYS ARG SER ILE GLU SEQRES 6 B 296 ASP HIS PHE ASP ARG SER ALA GLU LEU GLU PHE ASN LEU SEQRES 7 B 296 ARG GLU LYS GLY LYS THR GLU THR LEU LYS GLU MET GLN SEQRES 8 B 296 GLN ILE ALA ASP LEU ALA ASN ILE HIS TYR ILE ARG GLN SEQRES 9 B 296 LYS GLU PRO LEU GLY LEU GLY HIS ALA VAL LEU CYS ALA SEQRES 10 B 296 GLU HIS PHE ILE GLY ASP GLU PRO PHE ALA VAL LEU LEU SEQRES 11 B 296 GLY ASP ASP ILE MET VAL SER GLU THR PRO ALA LEU ARG SEQRES 12 B 296 GLN LEU MET ASP VAL TYR ASP VAL TYR GLY THR GLU VAL SEQRES 13 B 296 VAL GLY VAL GLN SER VAL LEU PRO GLU ASP VAL SER LYS SEQRES 14 B 296 TYR GLY ILE ILE ASN THR SER GLY SER GLN GLY HIS VAL SEQRES 15 B 296 TYR GLU VAL ASN ASP LEU VAL GLU LYS PRO SER PRO GLU SEQRES 16 B 296 GLU ALA PRO SER GLU ILE ALA VAL MET GLY ARG TYR VAL SEQRES 17 B 296 LEU ASN SER SER ILE PHE SER VAL LEU LYS THR ILE GLY SEQRES 18 B 296 ARG GLY ALA GLY ASN GLU ILE GLN LEU THR ASP ALA LEU SEQRES 19 B 296 ARG GLU VAL CYS ARG LYS GLU PRO ILE HIS ALA ARG LEU SEQRES 20 B 296 LEU GLU GLY ASN ARG TYR ASP ILE GLY ASP LYS LEU GLY SEQRES 21 B 296 CYS PHE LYS ALA SER THR GLU ILE GLY LEU MET ARG PRO SEQRES 22 B 296 GLU MET ARG SER GLN LEU LEU ALA TYR LEU GLU ASP VAL SEQRES 23 B 296 ILE LYS ARG GLU THR LYS GLU MET LEU ARG FORMUL 3 HOH *48(H2 O) HELIX 1 AA1 GLY A 16 LEU A 20 5 5 HELIX 2 AA2 PRO A 21 ALA A 25 5 5 HELIX 3 AA3 PRO A 27 LEU A 31 5 5 HELIX 4 AA4 PRO A 37 SER A 49 1 13 HELIX 5 AA5 LYS A 62 PHE A 69 1 8 HELIX 6 AA6 SER A 72 GLU A 81 1 10 HELIX 7 AA7 LYS A 84 ALA A 95 1 12 HELIX 8 AA8 LEU A 109 ALA A 118 1 10 HELIX 9 AA9 ALA A 118 GLY A 123 1 6 HELIX 10 AB1 PRO A 141 GLY A 154 1 14 HELIX 11 AB2 LEU A 164 LYS A 170 5 7 HELIX 12 AB3 SER A 213 ILE A 221 1 9 HELIX 13 AB4 GLN A 230 GLU A 242 1 13 HELIX 14 AB5 ASP A 258 LEU A 271 1 14 HELIX 15 AB6 ARG A 273 ARG A 297 1 25 HELIX 16 AB7 GLY B 16 LEU B 20 5 5 HELIX 17 AB8 PRO B 27 LEU B 31 5 5 HELIX 18 AB9 PRO B 37 SER B 49 1 13 HELIX 19 AC1 LYS B 62 PHE B 69 1 8 HELIX 20 AC2 SER B 72 GLU B 81 1 10 HELIX 21 AC3 LYS B 84 ALA B 95 1 12 HELIX 22 AC4 LEU B 109 ALA B 118 1 10 HELIX 23 AC5 ALA B 118 GLY B 123 1 6 HELIX 24 AC6 PRO B 141 GLY B 154 1 14 HELIX 25 AC7 ASP B 167 LYS B 170 5 4 HELIX 26 AC8 SER B 213 ILE B 221 1 9 HELIX 27 AC9 LEU B 231 GLU B 242 1 12 HELIX 28 AD1 ASP B 258 LEU B 271 1 14 HELIX 29 AD2 ARG B 273 LEU B 296 1 24 SHEET 1 AA120 ILE A 202 ASN A 211 0 SHEET 2 AA120 VAL A 157 SER A 162 -1 N GLY A 159 O MET A 205 SHEET 3 AA120 HIS A 245 LEU A 248 1 O ARG A 247 N VAL A 160 SHEET 4 AA120 VAL A 183 GLU A 191 -1 N TYR A 184 O ALA A 246 SHEET 5 AA120 GLY A 172 GLN A 180 -1 N GLN A 180 O VAL A 183 SHEET 6 AA120 ILE A 202 ASN A 211 -1 O VAL A 204 N GLY A 172 SHEET 7 AA120 PRO A 126 LEU A 130 -1 N PHE A 127 O LEU A 210 SHEET 8 AA120 LYS A 7 ALA A 12 1 N VAL A 9 O ALA A 128 SHEET 9 AA120 ASP A 53 THR A 58 1 O ILE A 57 N ALA A 12 SHEET 10 AA120 ASN A 99 ARG A 104 1 O HIS A 101 N ILE A 54 SHEET 11 AA120 ASN B 99 ARG B 104 -1 O TYR B 102 N TYR A 102 SHEET 12 AA120 ASP B 53 THR B 58 1 N ILE B 54 O HIS B 101 SHEET 13 AA120 LYS B 7 ALA B 12 1 N ALA B 12 O ILE B 57 SHEET 14 AA120 PHE B 127 LEU B 130 1 O ALA B 128 N VAL B 9 SHEET 15 AA120 ILE B 202 LEU B 210 -1 O LEU B 210 N PHE B 127 SHEET 16 AA120 GLY B 172 GLN B 180 -1 N ILE B 174 O ILE B 202 SHEET 17 AA120 VAL B 183 GLU B 191 -1 O VAL B 183 N GLN B 180 SHEET 18 AA120 ILE B 244 LEU B 248 -1 O ALA B 246 N TYR B 184 SHEET 19 AA120 VAL B 157 SER B 162 1 N VAL B 160 O ARG B 247 SHEET 20 AA120 ILE B 202 LEU B 210 -1 O MET B 205 N GLY B 159 SHEET 1 AA2 2 ASP A 134 VAL A 137 0 SHEET 2 AA2 2 ASN A 252 ASP A 255 -1 O TYR A 254 N ILE A 135 SHEET 1 AA3 2 ASP B 134 VAL B 137 0 SHEET 2 AA3 2 ASN B 252 ASP B 255 -1 O TYR B 254 N ILE B 135 CISPEP 1 LEU A 20 PRO A 21 0 -4.70 CISPEP 2 LEU B 20 PRO B 21 0 -9.76 CRYST1 54.156 158.979 180.317 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018465 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005546 0.00000