HEADER LIPID BINDING PROTEIN 03-APR-21 7O3W TITLE STRUCTURAL BASIS FOR VIPP1 OLIGOMERIZATION AND MAINTENANCE OF TITLE 2 THYLAKOID MEMBRANE INTEGRITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SLL0617; COMPND 3 CHAIN: D, C, E, F, A, B; COMPND 4 SYNONYM: VIPP1 / IM30 COMPLEX; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. (STRAIN PCC 6803 / KAZUSA); SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 STRAIN: PCC 6803 / KAZUSA; SOURCE 5 GENE: SLL0617; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ER2566 KEYWDS ESCRT-III, MEMBRANE REMODELLING, NUCLEOTIDE HYDROLYSIS, KEYWDS 2 PHOTOSYNTHESIS, THYLAKOID BIOGENESIS, STRESS RESPONSE, LIPID BINDING KEYWDS 3 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR T.K.GUPTA,S.KLUMPE,K.GRIES,M.STRAUSS,T.RUDACK,J.M.SCHULLER,M.SCHRODA, AUTHOR 2 B.D.ENGEL REVDAT 3 21-JUL-21 7O3W 1 JRNL REVDAT 2 07-JUL-21 7O3W 1 JRNL REVDAT 1 30-JUN-21 7O3W 0 JRNL AUTH T.K.GUPTA,S.KLUMPE,K.GRIES,S.HEINZ,W.WIETRZYNSKI,N.OHNISHI, JRNL AUTH 2 J.NIEMEYER,B.SPANIOL,M.SCHAFFER,A.RAST,M.OSTERMEIER, JRNL AUTH 3 M.STRAUSS,J.M.PLITZKO,W.BAUMEISTER,T.RUDACK,W.SAKAMOTO, JRNL AUTH 4 J.NICKELSEN,J.M.SCHULLER,M.SCHRODA,B.D.ENGEL JRNL TITL STRUCTURAL BASIS FOR VIPP1 OLIGOMERIZATION AND MAINTENANCE JRNL TITL 2 OF THYLAKOID MEMBRANE INTEGRITY. JRNL REF CELL V. 184 3643 2021 JRNL REFN ISSN 1097-4172 JRNL PMID 34166613 JRNL DOI 10.1016/J.CELL.2021.05.011 REMARK 2 REMARK 2 RESOLUTION. 4.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM, GCTF, NAMD, PHENIX, RELION, REMARK 3 RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 4WHE REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : INITIAL MODEL 4WHE USED FOR COMPARATIVE REMARK 3 MODELLING AND ROSETTA TO PREDICT THE MISSING SEGMENTS REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.900 REMARK 3 NUMBER OF PARTICLES : 13000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7O3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292114797. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : VIPP1 / IM30 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 84-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C, E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.900969 -0.433884 0.000000 0.00000 REMARK 350 BIOMT2 2 0.433884 0.900969 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.623490 -0.781831 0.000000 0.00000 REMARK 350 BIOMT2 3 0.781831 0.623490 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.222521 -0.974928 0.000000 0.00000 REMARK 350 BIOMT2 4 0.974928 0.222521 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -0.222521 -0.974928 0.000000 0.00000 REMARK 350 BIOMT2 5 0.974928 -0.222521 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 -0.623490 -0.781831 0.000000 0.00000 REMARK 350 BIOMT2 6 0.781831 -0.623490 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.900969 -0.433884 0.000000 0.00000 REMARK 350 BIOMT2 7 0.433884 -0.900969 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 9 -0.900969 0.433884 0.000000 0.00000 REMARK 350 BIOMT2 9 -0.433884 -0.900969 0.000000 0.00000 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 10 -0.623490 0.781831 0.000000 0.00000 REMARK 350 BIOMT2 10 -0.781831 -0.623490 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 11 -0.222521 0.974928 0.000000 0.00000 REMARK 350 BIOMT2 11 -0.974928 -0.222521 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 12 0.222521 0.974928 0.000000 0.00000 REMARK 350 BIOMT2 12 -0.974928 0.222521 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 13 0.623490 0.781831 0.000000 0.00000 REMARK 350 BIOMT2 13 -0.781831 0.623490 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 14 0.900969 0.433884 0.000000 0.00000 REMARK 350 BIOMT2 14 -0.433884 0.900969 0.000000 0.00000 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER D 216 REMARK 465 MET D 217 REMARK 465 ALA D 218 REMARK 465 GLY D 219 REMARK 465 GLY D 220 REMARK 465 ALA D 221 REMARK 465 LEU D 222 REMARK 465 PRO D 223 REMARK 465 GLY D 224 REMARK 465 THR D 225 REMARK 465 SER D 226 REMARK 465 ALA D 227 REMARK 465 ALA D 228 REMARK 465 THR D 229 REMARK 465 PRO D 230 REMARK 465 GLN D 231 REMARK 465 LEU D 232 REMARK 465 GLU D 233 REMARK 465 ALA D 234 REMARK 465 ALA D 235 REMARK 465 PRO D 236 REMARK 465 VAL D 237 REMARK 465 ASP D 238 REMARK 465 SER D 239 REMARK 465 SER D 240 REMARK 465 VAL D 241 REMARK 465 PRO D 242 REMARK 465 ALA D 243 REMARK 465 ASN D 244 REMARK 465 ASN D 245 REMARK 465 ALA D 246 REMARK 465 SER D 247 REMARK 465 GLN D 248 REMARK 465 ASP D 249 REMARK 465 ASP D 250 REMARK 465 ALA D 251 REMARK 465 VAL D 252 REMARK 465 ILE D 253 REMARK 465 ASP D 254 REMARK 465 GLN D 255 REMARK 465 GLU D 256 REMARK 465 LEU D 257 REMARK 465 ASP D 258 REMARK 465 ASP D 259 REMARK 465 LEU D 260 REMARK 465 ARG D 261 REMARK 465 ARG D 262 REMARK 465 ARG D 263 REMARK 465 LEU D 264 REMARK 465 ASN D 265 REMARK 465 ASN D 266 REMARK 465 LEU D 267 REMARK 465 SER C 216 REMARK 465 MET C 217 REMARK 465 ALA C 218 REMARK 465 GLY C 219 REMARK 465 GLY C 220 REMARK 465 ALA C 221 REMARK 465 LEU C 222 REMARK 465 PRO C 223 REMARK 465 GLY C 224 REMARK 465 THR C 225 REMARK 465 SER C 226 REMARK 465 ALA C 227 REMARK 465 ALA C 228 REMARK 465 THR C 229 REMARK 465 PRO C 230 REMARK 465 GLN C 231 REMARK 465 LEU C 232 REMARK 465 GLU C 233 REMARK 465 ALA C 234 REMARK 465 ALA C 235 REMARK 465 PRO C 236 REMARK 465 VAL C 237 REMARK 465 ASP C 238 REMARK 465 SER C 239 REMARK 465 SER C 240 REMARK 465 VAL C 241 REMARK 465 PRO C 242 REMARK 465 ALA C 243 REMARK 465 ASN C 244 REMARK 465 ASN C 245 REMARK 465 ALA C 246 REMARK 465 SER C 247 REMARK 465 GLN C 248 REMARK 465 ASP C 249 REMARK 465 ASP C 250 REMARK 465 ALA C 251 REMARK 465 VAL C 252 REMARK 465 ILE C 253 REMARK 465 ASP C 254 REMARK 465 GLN C 255 REMARK 465 GLU C 256 REMARK 465 LEU C 257 REMARK 465 ASP C 258 REMARK 465 ASP C 259 REMARK 465 LEU C 260 REMARK 465 ARG C 261 REMARK 465 ARG C 262 REMARK 465 ARG C 263 REMARK 465 LEU C 264 REMARK 465 ASN C 265 REMARK 465 ASN C 266 REMARK 465 LEU C 267 REMARK 465 SER E 216 REMARK 465 MET E 217 REMARK 465 ALA E 218 REMARK 465 GLY E 219 REMARK 465 GLY E 220 REMARK 465 ALA E 221 REMARK 465 LEU E 222 REMARK 465 PRO E 223 REMARK 465 GLY E 224 REMARK 465 THR E 225 REMARK 465 SER E 226 REMARK 465 ALA E 227 REMARK 465 ALA E 228 REMARK 465 THR E 229 REMARK 465 PRO E 230 REMARK 465 GLN E 231 REMARK 465 LEU E 232 REMARK 465 GLU E 233 REMARK 465 ALA E 234 REMARK 465 ALA E 235 REMARK 465 PRO E 236 REMARK 465 VAL E 237 REMARK 465 ASP E 238 REMARK 465 SER E 239 REMARK 465 SER E 240 REMARK 465 VAL E 241 REMARK 465 PRO E 242 REMARK 465 ALA E 243 REMARK 465 ASN E 244 REMARK 465 ASN E 245 REMARK 465 ALA E 246 REMARK 465 SER E 247 REMARK 465 GLN E 248 REMARK 465 ASP E 249 REMARK 465 ASP E 250 REMARK 465 ALA E 251 REMARK 465 VAL E 252 REMARK 465 ILE E 253 REMARK 465 ASP E 254 REMARK 465 GLN E 255 REMARK 465 GLU E 256 REMARK 465 LEU E 257 REMARK 465 ASP E 258 REMARK 465 ASP E 259 REMARK 465 LEU E 260 REMARK 465 ARG E 261 REMARK 465 ARG E 262 REMARK 465 ARG E 263 REMARK 465 LEU E 264 REMARK 465 ASN E 265 REMARK 465 ASN E 266 REMARK 465 LEU E 267 REMARK 465 SER F 216 REMARK 465 MET F 217 REMARK 465 ALA F 218 REMARK 465 GLY F 219 REMARK 465 GLY F 220 REMARK 465 ALA F 221 REMARK 465 LEU F 222 REMARK 465 PRO F 223 REMARK 465 GLY F 224 REMARK 465 THR F 225 REMARK 465 SER F 226 REMARK 465 ALA F 227 REMARK 465 ALA F 228 REMARK 465 THR F 229 REMARK 465 PRO F 230 REMARK 465 GLN F 231 REMARK 465 LEU F 232 REMARK 465 GLU F 233 REMARK 465 ALA F 234 REMARK 465 ALA F 235 REMARK 465 PRO F 236 REMARK 465 VAL F 237 REMARK 465 ASP F 238 REMARK 465 SER F 239 REMARK 465 SER F 240 REMARK 465 VAL F 241 REMARK 465 PRO F 242 REMARK 465 ALA F 243 REMARK 465 ASN F 244 REMARK 465 ASN F 245 REMARK 465 ALA F 246 REMARK 465 SER F 247 REMARK 465 GLN F 248 REMARK 465 ASP F 249 REMARK 465 ASP F 250 REMARK 465 ALA F 251 REMARK 465 VAL F 252 REMARK 465 ILE F 253 REMARK 465 ASP F 254 REMARK 465 GLN F 255 REMARK 465 GLU F 256 REMARK 465 LEU F 257 REMARK 465 ASP F 258 REMARK 465 ASP F 259 REMARK 465 LEU F 260 REMARK 465 ARG F 261 REMARK 465 ARG F 262 REMARK 465 ARG F 263 REMARK 465 LEU F 264 REMARK 465 ASN F 265 REMARK 465 ASN F 266 REMARK 465 LEU F 267 REMARK 465 SER A 216 REMARK 465 MET A 217 REMARK 465 ALA A 218 REMARK 465 GLY A 219 REMARK 465 GLY A 220 REMARK 465 ALA A 221 REMARK 465 LEU A 222 REMARK 465 PRO A 223 REMARK 465 GLY A 224 REMARK 465 THR A 225 REMARK 465 SER A 226 REMARK 465 ALA A 227 REMARK 465 ALA A 228 REMARK 465 THR A 229 REMARK 465 PRO A 230 REMARK 465 GLN A 231 REMARK 465 LEU A 232 REMARK 465 GLU A 233 REMARK 465 ALA A 234 REMARK 465 ALA A 235 REMARK 465 PRO A 236 REMARK 465 VAL A 237 REMARK 465 ASP A 238 REMARK 465 SER A 239 REMARK 465 SER A 240 REMARK 465 VAL A 241 REMARK 465 PRO A 242 REMARK 465 ALA A 243 REMARK 465 ASN A 244 REMARK 465 ASN A 245 REMARK 465 ALA A 246 REMARK 465 SER A 247 REMARK 465 GLN A 248 REMARK 465 ASP A 249 REMARK 465 ASP A 250 REMARK 465 ALA A 251 REMARK 465 VAL A 252 REMARK 465 ILE A 253 REMARK 465 ASP A 254 REMARK 465 GLN A 255 REMARK 465 GLU A 256 REMARK 465 LEU A 257 REMARK 465 ASP A 258 REMARK 465 ASP A 259 REMARK 465 LEU A 260 REMARK 465 ARG A 261 REMARK 465 ARG A 262 REMARK 465 ARG A 263 REMARK 465 LEU A 264 REMARK 465 ASN A 265 REMARK 465 ASN A 266 REMARK 465 LEU A 267 REMARK 465 SER B 216 REMARK 465 MET B 217 REMARK 465 ALA B 218 REMARK 465 GLY B 219 REMARK 465 GLY B 220 REMARK 465 ALA B 221 REMARK 465 LEU B 222 REMARK 465 PRO B 223 REMARK 465 GLY B 224 REMARK 465 THR B 225 REMARK 465 SER B 226 REMARK 465 ALA B 227 REMARK 465 ALA B 228 REMARK 465 THR B 229 REMARK 465 PRO B 230 REMARK 465 GLN B 231 REMARK 465 LEU B 232 REMARK 465 GLU B 233 REMARK 465 ALA B 234 REMARK 465 ALA B 235 REMARK 465 PRO B 236 REMARK 465 VAL B 237 REMARK 465 ASP B 238 REMARK 465 SER B 239 REMARK 465 SER B 240 REMARK 465 VAL B 241 REMARK 465 PRO B 242 REMARK 465 ALA B 243 REMARK 465 ASN B 244 REMARK 465 ASN B 245 REMARK 465 ALA B 246 REMARK 465 SER B 247 REMARK 465 GLN B 248 REMARK 465 ASP B 249 REMARK 465 ASP B 250 REMARK 465 ALA B 251 REMARK 465 VAL B 252 REMARK 465 ILE B 253 REMARK 465 ASP B 254 REMARK 465 GLN B 255 REMARK 465 GLU B 256 REMARK 465 LEU B 257 REMARK 465 ASP B 258 REMARK 465 ASP B 259 REMARK 465 LEU B 260 REMARK 465 ARG B 261 REMARK 465 ARG B 262 REMARK 465 ARG B 263 REMARK 465 LEU B 264 REMARK 465 ASN B 265 REMARK 465 ASN B 266 REMARK 465 LEU B 267 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA ALA A 13 CG GLN B 31 1.42 REMARK 500 CB ALA A 13 CB GLN B 31 1.63 REMARK 500 O GLU F 38 OE1 GLN F 42 1.82 REMARK 500 CA ALA A 13 CB GLN B 31 1.85 REMARK 500 CB ASN A 16 NE2 GLN B 31 1.86 REMARK 500 O GLY D 160 OG SER D 166 1.86 REMARK 500 C ALA A 13 CG GLN B 31 1.90 REMARK 500 O ALA A 13 CG GLN B 31 1.95 REMARK 500 O GLY D 160 CB SER D 166 1.96 REMARK 500 O GLY B 192 N GLU B 194 2.00 REMARK 500 OD2 ASP D 17 CE LYS E 27 2.00 REMARK 500 O LEU F 77 OG1 THR F 80 2.05 REMARK 500 O LYS B 27 OE1 GLN B 31 2.07 REMARK 500 O LEU A 77 OG1 THR A 80 2.09 REMARK 500 O GLY B 186 O GLY B 190 2.14 REMARK 500 O ALA B 103 OG1 THR B 106 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 44 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 44 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 24 168.30 -49.04 REMARK 500 SER D 162 -65.00 -95.85 REMARK 500 GLU C 26 -21.19 95.04 REMARK 500 GLU C 83 76.43 -111.32 REMARK 500 ASP E 24 -175.28 -69.41 REMARK 500 GLU E 26 -57.36 -135.92 REMARK 500 LYS E 27 -50.05 -29.70 REMARK 500 SER E 162 49.21 -161.78 REMARK 500 GLU F 83 76.42 -107.28 REMARK 500 THR F 161 -10.07 -144.92 REMARK 500 ALA A 22 36.94 -87.27 REMARK 500 GLU A 84 26.78 -142.83 REMARK 500 GLU A 179 109.65 62.48 REMARK 500 THR B 161 -138.35 45.04 REMARK 500 SER B 162 48.13 36.35 REMARK 500 ILE B 193 -58.75 45.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 44 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-12710 RELATED DB: EMDB REMARK 900 STRUCTURAL BASIS FOR VIPP1 OLIGOMERIZATION AND MAINTENANCE OF REMARK 900 THYLAKOID MEMBRANE INTEGRITY REMARK 900 RELATED ID: EMD-12711 RELATED DB: EMDB REMARK 900 RELATED ID: 7O3X RELATED DB: PDB REMARK 900 RELATED ID: EMD-12712 RELATED DB: EMDB REMARK 900 RELATED ID: 7O3Y RELATED DB: PDB REMARK 900 RELATED ID: EMD-12713 RELATED DB: EMDB REMARK 900 RELATED ID: 7O40 RELATED DB: PDB REMARK 900 RELATED ID: EMD-12714 RELATED DB: EMDB REMARK 900 RELATED ID: 7O3Z RELATED DB: PDB DBREF 7O3W D 3 267 UNP Q55707 Y617_SYNY3 3 267 DBREF 7O3W C 3 267 UNP Q55707 Y617_SYNY3 3 267 DBREF 7O3W E 3 267 UNP Q55707 Y617_SYNY3 3 267 DBREF 7O3W F 3 267 UNP Q55707 Y617_SYNY3 3 267 DBREF 7O3W A 3 267 UNP Q55707 Y617_SYNY3 3 267 DBREF 7O3W B 3 267 UNP Q55707 Y617_SYNY3 3 267 SEQADV 7O3W ALA D 2 UNP Q55707 EXPRESSION TAG SEQADV 7O3W ALA C 2 UNP Q55707 EXPRESSION TAG SEQADV 7O3W ALA E 2 UNP Q55707 EXPRESSION TAG SEQADV 7O3W ALA F 2 UNP Q55707 EXPRESSION TAG SEQADV 7O3W ALA A 2 UNP Q55707 EXPRESSION TAG SEQADV 7O3W ALA B 2 UNP Q55707 EXPRESSION TAG SEQRES 1 D 266 ALA LEU PHE ASP ARG LEU GLY ARG VAL VAL ARG ALA ASN SEQRES 2 D 266 LEU ASN ASP LEU VAL SER LYS ALA GLU ASP PRO GLU LYS SEQRES 3 D 266 VAL LEU GLU GLN ALA VAL ILE ASP MET GLN GLU ASP LEU SEQRES 4 D 266 VAL GLN LEU ARG GLN ALA VAL ALA ARG THR ILE ALA GLU SEQRES 5 D 266 GLU LYS ARG THR GLU GLN ARG LEU ASN GLN ASP THR GLN SEQRES 6 D 266 GLU ALA LYS LYS TRP GLU ASP ARG ALA LYS LEU ALA LEU SEQRES 7 D 266 THR ASN GLY GLU GLU ASN LEU ALA ARG GLU ALA LEU ALA SEQRES 8 D 266 ARG LYS LYS SER LEU THR ASP THR ALA ALA ALA TYR GLN SEQRES 9 D 266 THR GLN LEU ALA GLN GLN ARG THR MET SER GLU ASN LEU SEQRES 10 D 266 ARG ARG ASN LEU ALA ALA LEU GLU ALA LYS ILE SER GLU SEQRES 11 D 266 ALA LYS THR LYS LYS ASN MET LEU GLN ALA ARG ALA LYS SEQRES 12 D 266 ALA ALA LYS ALA ASN ALA GLU LEU GLN GLN THR LEU GLY SEQRES 13 D 266 GLY LEU GLY THR SER SER ALA THR SER ALA PHE GLU ARG SEQRES 14 D 266 MET GLU ASN LYS VAL LEU ASP MET GLU ALA THR SER GLN SEQRES 15 D 266 ALA ALA GLY GLU LEU ALA GLY PHE GLY ILE GLU ASN GLN SEQRES 16 D 266 PHE ALA GLN LEU GLU ALA SER SER GLY VAL GLU ASP GLU SEQRES 17 D 266 LEU ALA ALA LEU LYS ALA SER MET ALA GLY GLY ALA LEU SEQRES 18 D 266 PRO GLY THR SER ALA ALA THR PRO GLN LEU GLU ALA ALA SEQRES 19 D 266 PRO VAL ASP SER SER VAL PRO ALA ASN ASN ALA SER GLN SEQRES 20 D 266 ASP ASP ALA VAL ILE ASP GLN GLU LEU ASP ASP LEU ARG SEQRES 21 D 266 ARG ARG LEU ASN ASN LEU SEQRES 1 C 266 ALA LEU PHE ASP ARG LEU GLY ARG VAL VAL ARG ALA ASN SEQRES 2 C 266 LEU ASN ASP LEU VAL SER LYS ALA GLU ASP PRO GLU LYS SEQRES 3 C 266 VAL LEU GLU GLN ALA VAL ILE ASP MET GLN GLU ASP LEU SEQRES 4 C 266 VAL GLN LEU ARG GLN ALA VAL ALA ARG THR ILE ALA GLU SEQRES 5 C 266 GLU LYS ARG THR GLU GLN ARG LEU ASN GLN ASP THR GLN SEQRES 6 C 266 GLU ALA LYS LYS TRP GLU ASP ARG ALA LYS LEU ALA LEU SEQRES 7 C 266 THR ASN GLY GLU GLU ASN LEU ALA ARG GLU ALA LEU ALA SEQRES 8 C 266 ARG LYS LYS SER LEU THR ASP THR ALA ALA ALA TYR GLN SEQRES 9 C 266 THR GLN LEU ALA GLN GLN ARG THR MET SER GLU ASN LEU SEQRES 10 C 266 ARG ARG ASN LEU ALA ALA LEU GLU ALA LYS ILE SER GLU SEQRES 11 C 266 ALA LYS THR LYS LYS ASN MET LEU GLN ALA ARG ALA LYS SEQRES 12 C 266 ALA ALA LYS ALA ASN ALA GLU LEU GLN GLN THR LEU GLY SEQRES 13 C 266 GLY LEU GLY THR SER SER ALA THR SER ALA PHE GLU ARG SEQRES 14 C 266 MET GLU ASN LYS VAL LEU ASP MET GLU ALA THR SER GLN SEQRES 15 C 266 ALA ALA GLY GLU LEU ALA GLY PHE GLY ILE GLU ASN GLN SEQRES 16 C 266 PHE ALA GLN LEU GLU ALA SER SER GLY VAL GLU ASP GLU SEQRES 17 C 266 LEU ALA ALA LEU LYS ALA SER MET ALA GLY GLY ALA LEU SEQRES 18 C 266 PRO GLY THR SER ALA ALA THR PRO GLN LEU GLU ALA ALA SEQRES 19 C 266 PRO VAL ASP SER SER VAL PRO ALA ASN ASN ALA SER GLN SEQRES 20 C 266 ASP ASP ALA VAL ILE ASP GLN GLU LEU ASP ASP LEU ARG SEQRES 21 C 266 ARG ARG LEU ASN ASN LEU SEQRES 1 E 266 ALA LEU PHE ASP ARG LEU GLY ARG VAL VAL ARG ALA ASN SEQRES 2 E 266 LEU ASN ASP LEU VAL SER LYS ALA GLU ASP PRO GLU LYS SEQRES 3 E 266 VAL LEU GLU GLN ALA VAL ILE ASP MET GLN GLU ASP LEU SEQRES 4 E 266 VAL GLN LEU ARG GLN ALA VAL ALA ARG THR ILE ALA GLU SEQRES 5 E 266 GLU LYS ARG THR GLU GLN ARG LEU ASN GLN ASP THR GLN SEQRES 6 E 266 GLU ALA LYS LYS TRP GLU ASP ARG ALA LYS LEU ALA LEU SEQRES 7 E 266 THR ASN GLY GLU GLU ASN LEU ALA ARG GLU ALA LEU ALA SEQRES 8 E 266 ARG LYS LYS SER LEU THR ASP THR ALA ALA ALA TYR GLN SEQRES 9 E 266 THR GLN LEU ALA GLN GLN ARG THR MET SER GLU ASN LEU SEQRES 10 E 266 ARG ARG ASN LEU ALA ALA LEU GLU ALA LYS ILE SER GLU SEQRES 11 E 266 ALA LYS THR LYS LYS ASN MET LEU GLN ALA ARG ALA LYS SEQRES 12 E 266 ALA ALA LYS ALA ASN ALA GLU LEU GLN GLN THR LEU GLY SEQRES 13 E 266 GLY LEU GLY THR SER SER ALA THR SER ALA PHE GLU ARG SEQRES 14 E 266 MET GLU ASN LYS VAL LEU ASP MET GLU ALA THR SER GLN SEQRES 15 E 266 ALA ALA GLY GLU LEU ALA GLY PHE GLY ILE GLU ASN GLN SEQRES 16 E 266 PHE ALA GLN LEU GLU ALA SER SER GLY VAL GLU ASP GLU SEQRES 17 E 266 LEU ALA ALA LEU LYS ALA SER MET ALA GLY GLY ALA LEU SEQRES 18 E 266 PRO GLY THR SER ALA ALA THR PRO GLN LEU GLU ALA ALA SEQRES 19 E 266 PRO VAL ASP SER SER VAL PRO ALA ASN ASN ALA SER GLN SEQRES 20 E 266 ASP ASP ALA VAL ILE ASP GLN GLU LEU ASP ASP LEU ARG SEQRES 21 E 266 ARG ARG LEU ASN ASN LEU SEQRES 1 F 266 ALA LEU PHE ASP ARG LEU GLY ARG VAL VAL ARG ALA ASN SEQRES 2 F 266 LEU ASN ASP LEU VAL SER LYS ALA GLU ASP PRO GLU LYS SEQRES 3 F 266 VAL LEU GLU GLN ALA VAL ILE ASP MET GLN GLU ASP LEU SEQRES 4 F 266 VAL GLN LEU ARG GLN ALA VAL ALA ARG THR ILE ALA GLU SEQRES 5 F 266 GLU LYS ARG THR GLU GLN ARG LEU ASN GLN ASP THR GLN SEQRES 6 F 266 GLU ALA LYS LYS TRP GLU ASP ARG ALA LYS LEU ALA LEU SEQRES 7 F 266 THR ASN GLY GLU GLU ASN LEU ALA ARG GLU ALA LEU ALA SEQRES 8 F 266 ARG LYS LYS SER LEU THR ASP THR ALA ALA ALA TYR GLN SEQRES 9 F 266 THR GLN LEU ALA GLN GLN ARG THR MET SER GLU ASN LEU SEQRES 10 F 266 ARG ARG ASN LEU ALA ALA LEU GLU ALA LYS ILE SER GLU SEQRES 11 F 266 ALA LYS THR LYS LYS ASN MET LEU GLN ALA ARG ALA LYS SEQRES 12 F 266 ALA ALA LYS ALA ASN ALA GLU LEU GLN GLN THR LEU GLY SEQRES 13 F 266 GLY LEU GLY THR SER SER ALA THR SER ALA PHE GLU ARG SEQRES 14 F 266 MET GLU ASN LYS VAL LEU ASP MET GLU ALA THR SER GLN SEQRES 15 F 266 ALA ALA GLY GLU LEU ALA GLY PHE GLY ILE GLU ASN GLN SEQRES 16 F 266 PHE ALA GLN LEU GLU ALA SER SER GLY VAL GLU ASP GLU SEQRES 17 F 266 LEU ALA ALA LEU LYS ALA SER MET ALA GLY GLY ALA LEU SEQRES 18 F 266 PRO GLY THR SER ALA ALA THR PRO GLN LEU GLU ALA ALA SEQRES 19 F 266 PRO VAL ASP SER SER VAL PRO ALA ASN ASN ALA SER GLN SEQRES 20 F 266 ASP ASP ALA VAL ILE ASP GLN GLU LEU ASP ASP LEU ARG SEQRES 21 F 266 ARG ARG LEU ASN ASN LEU SEQRES 1 A 266 ALA LEU PHE ASP ARG LEU GLY ARG VAL VAL ARG ALA ASN SEQRES 2 A 266 LEU ASN ASP LEU VAL SER LYS ALA GLU ASP PRO GLU LYS SEQRES 3 A 266 VAL LEU GLU GLN ALA VAL ILE ASP MET GLN GLU ASP LEU SEQRES 4 A 266 VAL GLN LEU ARG GLN ALA VAL ALA ARG THR ILE ALA GLU SEQRES 5 A 266 GLU LYS ARG THR GLU GLN ARG LEU ASN GLN ASP THR GLN SEQRES 6 A 266 GLU ALA LYS LYS TRP GLU ASP ARG ALA LYS LEU ALA LEU SEQRES 7 A 266 THR ASN GLY GLU GLU ASN LEU ALA ARG GLU ALA LEU ALA SEQRES 8 A 266 ARG LYS LYS SER LEU THR ASP THR ALA ALA ALA TYR GLN SEQRES 9 A 266 THR GLN LEU ALA GLN GLN ARG THR MET SER GLU ASN LEU SEQRES 10 A 266 ARG ARG ASN LEU ALA ALA LEU GLU ALA LYS ILE SER GLU SEQRES 11 A 266 ALA LYS THR LYS LYS ASN MET LEU GLN ALA ARG ALA LYS SEQRES 12 A 266 ALA ALA LYS ALA ASN ALA GLU LEU GLN GLN THR LEU GLY SEQRES 13 A 266 GLY LEU GLY THR SER SER ALA THR SER ALA PHE GLU ARG SEQRES 14 A 266 MET GLU ASN LYS VAL LEU ASP MET GLU ALA THR SER GLN SEQRES 15 A 266 ALA ALA GLY GLU LEU ALA GLY PHE GLY ILE GLU ASN GLN SEQRES 16 A 266 PHE ALA GLN LEU GLU ALA SER SER GLY VAL GLU ASP GLU SEQRES 17 A 266 LEU ALA ALA LEU LYS ALA SER MET ALA GLY GLY ALA LEU SEQRES 18 A 266 PRO GLY THR SER ALA ALA THR PRO GLN LEU GLU ALA ALA SEQRES 19 A 266 PRO VAL ASP SER SER VAL PRO ALA ASN ASN ALA SER GLN SEQRES 20 A 266 ASP ASP ALA VAL ILE ASP GLN GLU LEU ASP ASP LEU ARG SEQRES 21 A 266 ARG ARG LEU ASN ASN LEU SEQRES 1 B 266 ALA LEU PHE ASP ARG LEU GLY ARG VAL VAL ARG ALA ASN SEQRES 2 B 266 LEU ASN ASP LEU VAL SER LYS ALA GLU ASP PRO GLU LYS SEQRES 3 B 266 VAL LEU GLU GLN ALA VAL ILE ASP MET GLN GLU ASP LEU SEQRES 4 B 266 VAL GLN LEU ARG GLN ALA VAL ALA ARG THR ILE ALA GLU SEQRES 5 B 266 GLU LYS ARG THR GLU GLN ARG LEU ASN GLN ASP THR GLN SEQRES 6 B 266 GLU ALA LYS LYS TRP GLU ASP ARG ALA LYS LEU ALA LEU SEQRES 7 B 266 THR ASN GLY GLU GLU ASN LEU ALA ARG GLU ALA LEU ALA SEQRES 8 B 266 ARG LYS LYS SER LEU THR ASP THR ALA ALA ALA TYR GLN SEQRES 9 B 266 THR GLN LEU ALA GLN GLN ARG THR MET SER GLU ASN LEU SEQRES 10 B 266 ARG ARG ASN LEU ALA ALA LEU GLU ALA LYS ILE SER GLU SEQRES 11 B 266 ALA LYS THR LYS LYS ASN MET LEU GLN ALA ARG ALA LYS SEQRES 12 B 266 ALA ALA LYS ALA ASN ALA GLU LEU GLN GLN THR LEU GLY SEQRES 13 B 266 GLY LEU GLY THR SER SER ALA THR SER ALA PHE GLU ARG SEQRES 14 B 266 MET GLU ASN LYS VAL LEU ASP MET GLU ALA THR SER GLN SEQRES 15 B 266 ALA ALA GLY GLU LEU ALA GLY PHE GLY ILE GLU ASN GLN SEQRES 16 B 266 PHE ALA GLN LEU GLU ALA SER SER GLY VAL GLU ASP GLU SEQRES 17 B 266 LEU ALA ALA LEU LYS ALA SER MET ALA GLY GLY ALA LEU SEQRES 18 B 266 PRO GLY THR SER ALA ALA THR PRO GLN LEU GLU ALA ALA SEQRES 19 B 266 PRO VAL ASP SER SER VAL PRO ALA ASN ASN ALA SER GLN SEQRES 20 B 266 ASP ASP ALA VAL ILE ASP GLN GLU LEU ASP ASP LEU ARG SEQRES 21 B 266 ARG ARG LEU ASN ASN LEU HET ADP A 301 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 7 ADP C10 H15 N5 O10 P2 HELIX 1 AA1 ALA D 2 GLU D 23 1 22 HELIX 2 AA2 LEU D 29 GLY D 82 1 54 HELIX 3 AA3 GLU D 83 GLY D 157 1 75 HELIX 4 AA4 SER D 163 GLY D 190 1 28 HELIX 5 AA5 GLY D 192 ALA D 215 1 24 HELIX 6 AA6 LEU C 3 GLU C 23 1 21 HELIX 7 AA7 LYS C 27 GLY C 82 1 56 HELIX 8 AA8 GLU C 83 LEU C 156 1 74 HELIX 9 AA9 THR C 165 GLY C 190 1 26 HELIX 10 AB1 ILE C 193 ALA C 215 1 23 HELIX 11 AB2 LEU E 3 GLU E 23 1 21 HELIX 12 AB3 GLU E 26 GLY E 82 1 57 HELIX 13 AB4 GLU E 83 GLY E 157 1 75 HELIX 14 AB5 SER E 163 GLY E 190 1 28 HELIX 15 AB6 ILE E 193 ALA E 215 1 23 HELIX 16 AB7 LEU F 3 ALA F 22 1 20 HELIX 17 AB8 GLU F 26 GLY F 82 1 57 HELIX 18 AB9 GLU F 83 GLY F 157 1 75 HELIX 19 AC1 THR F 161 GLY F 190 1 30 HELIX 20 AC2 GLY F 192 ALA F 215 1 24 HELIX 21 AC3 LEU A 3 ALA A 22 1 20 HELIX 22 AC4 ASP A 24 LEU A 79 1 56 HELIX 23 AC5 ARG A 88 LEU A 156 1 69 HELIX 24 AC6 SER A 163 VAL A 175 1 13 HELIX 25 AC7 LEU A 176 GLU A 179 5 4 HELIX 26 AC8 ALA A 184 LEU A 213 1 30 HELIX 27 AC9 LEU B 3 GLU B 23 1 21 HELIX 28 AD1 ASP B 24 GLY B 82 1 59 HELIX 29 AD2 GLU B 83 GLY B 157 1 75 HELIX 30 AD3 SER B 163 GLY B 190 1 28 HELIX 31 AD4 ILE B 193 ALA B 215 1 23 SITE 1 AC1 1 ASP A 177 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000