HEADER RNA BINDING PROTEIN 06-APR-21 7O4N TITLE STRUCTURE OF STAPHYLOCOCCUS AUREUS M1A22-TRNA METHYLTRANSFERASE IN TITLE 2 COMPLEX WITH S-ADENOSYLMETHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (ADENINE(22)-N(1))-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRNA (ADENINE-N(1))-METHYLTRANSFERASE,TRNA COMPND 5 METHYLTRANSFERASE,TRNA-M1A22 METHYLASE; COMPND 6 EC: 2.1.1.217; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: TRMK, BTN44_04370, DD547_01646, DQV53_08725, EP54_01080, SOURCE 5 EQ90_01915, FA040_08445, G0X12_13870, G6Y10_03490, GO746_11460, SOURCE 6 GO803_02410, GO821_00660, GO894_13820, GO942_05350, SOURCE 7 HMPREF2819_12705, HMPREF3211_01711, NCTC10654_01624, SOURCE 8 NCTC10988_01882, SAMEA1029528_01600, SAMEA1029547_00798, SOURCE 9 SAMEA1029553_00619, SAMEA103891215_02131, SAMEA103891286_01600, SOURCE 10 SAMEA103891321_01985, SAMEA103891529_00207, SAMEA1964876_01370, SOURCE 11 SAMEA1965205_01483, SAMEA1966505_01613, SAMEA1969349_01355, SOURCE 12 SAMEA1969845_01762, SAMEA1971706_00969, SAMEA1972827_01752, SOURCE 13 SAMEA2076212_01686, SAMEA2076218_01752, SAMEA2076220_01838, SOURCE 14 SAMEA2076226_01470, SAMEA2076463_01221, SAMEA2076464_01220, SOURCE 15 SAMEA2076470_01440, SAMEA2076472_01358, SAMEA2076478_01562, SOURCE 16 SAMEA2076480_01089, SAMEA2076481_01742, SAMEA2076743_01499, SOURCE 17 SAMEA2076745_01827, SAMEA2076746_01427, SAMEA2076747_01232, SOURCE 18 SAMEA2076749_01543, SAMEA2076751_01354, SAMEA2076752_01303, SOURCE 19 SAMEA2076755_00992, SAMEA2076756_01055, SAMEA2076758_00894, SOURCE 20 SAMEA2076759_01126, SAMEA2076761_01348, SAMEA2076762_01436, SOURCE 21 SAMEA2076763_00759, SAMEA2076764_01515, SAMEA2076765_01533, SOURCE 22 SAMEA2077023_01670, SAMEA2077025_00820, SAMEA2077027_01445, SOURCE 23 SAMEA2077029_01261, SAMEA2077031_01378, SAMEA2077034_01301, SOURCE 24 SAMEA2077035_01224, SAMEA2077039_01360, SAMEA2077040_01028, SOURCE 25 SAMEA2077041_01644, SAMEA2077044_01316, SAMEA2077045_01391, SOURCE 26 SAMEA2077046_01185, SAMEA2077293_01519, SAMEA2077294_01624, SOURCE 27 SAMEA2077295_01192, SAMEA2077297_01318, SAMEA2077300_01622, SOURCE 28 SAMEA2077301_01189, SAMEA2077302_01534, SAMEA2077303_01399, SOURCE 29 SAMEA2077307_01350, SAMEA2077832_01495, SAMEA2078252_01643, SOURCE 30 SAMEA2078256_01246, SAMEA2078307_01427, SAMEA2078308_01217, SOURCE 31 SAMEA2078553_01120, SAMEA2078558_01423, SAMEA2078560_01322, SOURCE 32 SAMEA2078569_01685, SAMEA2078570_01555, SAMEA2078572_01773, SOURCE 33 SAMEA2078824_01091, SAMEA2078837_01341, SAMEA2079048_01436, SOURCE 34 SAMEA2079051_01539, SAMEA2079277_01894, SAMEA2079291_01924, SOURCE 35 SAMEA2079503_01584, SAMEA2079507_01091, SAMEA2079512_01790, SOURCE 36 SAMEA2079517_01641, SAMEA2079724_01423, SAMEA2079727_01698, SOURCE 37 SAMEA2079728_01857, SAMEA2079732_01742, SAMEA2079946_01710, SOURCE 38 SAMEA2079949_01677, SAMEA2079951_01469, SAMEA2079952_01505, SOURCE 39 SAMEA2079957_01826, SAMEA2079958_01736, SAMEA2079960_01921, SOURCE 40 SAMEA2079961_01695, SAMEA2079968_01426, SAMEA2080329_01554, SOURCE 41 SAMEA2080330_01826, SAMEA2080334_01846, SAMEA2080433_01826, SOURCE 42 SAMEA2080812_01157, SAMEA2080898_01924, SAMEA2080900_01348, SOURCE 43 SAMEA2080904_01206, SAMEA2080913_01366, SAMEA2081043_01422, SOURCE 44 SAMEA2081053_01329, SAMEA2081054_00977, SAMEA2081055_01316, SOURCE 45 SAMEA2081060_01737, SAMEA2081211_00771, SAMEA2081213_01692, SOURCE 46 SAMEA2081218_01563, SAMEA2081341_01427, SAMEA2081342_01698, SOURCE 47 SAMEA2081349_01778, SAMEA2081359_01533, SAMEA2081362_01709, SOURCE 48 SAMEA2081468_01114, SAMEA2081474_01419, SAMEA2081475_01365, SOURCE 49 SAMEA2081476_00675, SAMEA2081479_01187, SAMEA2081480_01597, SOURCE 50 SAMEA2081560_01071, SAMEA2081561_01293, SAMEA2081564_01484, SOURCE 51 SAMEA2081567_01473, SAMEA2081568_01481, SAMEA2081569_01030, SOURCE 52 SAMEA2081570_01484, SAMEA2081571_01409, SAMEA2081572_01350, SOURCE 53 SAMEA2081573_01059, SAMEA2081575_01377, SAMEA2081577_01516, SOURCE 54 SAMEA2081578_01199, SAMEA2081579_01278, SAMEA2081581_01183, SOURCE 55 SAMEA2081582_01489, SAMEA2081673_01542, SAMEA2081674_01779, SOURCE 56 SAMEA4008573_01508, SAMEA4008676_01532, SAMEA70146418_01109, SOURCE 57 SAMEA958766_01227, SAMEA958770_01628, SAMEA958772_01453, SOURCE 58 SAMEA958778_01291, SAMEA958779_00936, SAMEA958785_01276, SOURCE 59 SAMEA958793_01651, SAMEA958798_01340, SAMEA958804_01515, SOURCE 60 SAMEA958810_01295, SAMEA958836_01528, SAMEA958838_01131, SOURCE 61 SAMEA958845_01585, SAMEA958846_01830, SAMEA958848_01518, SOURCE 62 SAMEA958855_01764, SAMEA958858_01220, SAMEA958898_00989, SOURCE 63 SAMEA958906_01622, SAMEA958924_01364, SAMEA958925_01385, SOURCE 64 SAMEA958951_01382, SAMEA958953_00983, SAMEA958961_00408, SOURCE 65 SAMEA958979_01232, SAMEA958987_01625, SAMEA958995_01069; SOURCE 66 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 67 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRNA, METHYLTRANSFERASE, STAPHYLOCOCCUS AUREUS, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.M.GLOSTER,C.M.CZEKSTER,R.G.DA SILVA REVDAT 4 01-MAY-24 7O4N 1 REMARK REVDAT 3 06-JUL-22 7O4N 1 JRNL REVDAT 2 01-JUN-22 7O4N 1 JRNL REVDAT 1 20-APR-22 7O4N 0 JRNL AUTH P.SWEENEY,A.GALLIFORD,A.KUMAR,D.RAJU,N.B.KRISHNA, JRNL AUTH 2 E.SUTHERLAND,C.J.LEO,G.FISHER,R.LALITHA,L.MUTHURAJ, JRNL AUTH 3 G.SIGAMANI,V.OEHLER,S.SYNOWSKY,S.L.SHIRRAN,T.M.GLOSTER, JRNL AUTH 4 C.M.CZEKSTER,P.KUMAR,R.G.DA SILVA JRNL TITL STRUCTURE, DYNAMICS, AND MOLECULAR INHIBITION OF THE JRNL TITL 2 STAPHYLOCOCCUS AUREUS M 1 A22-TRNA METHYLTRANSFERASE TRMK. JRNL REF J.BIOL.CHEM. V. 298 02040 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35595101 JRNL DOI 10.1016/J.JBC.2022.102040 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 43997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2166 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3176 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1769 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : 2.70000 REMARK 3 B33 (A**2) : -2.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.372 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1961 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1903 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2689 ; 1.611 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4400 ; 1.477 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 6.113 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;36.054 ;24.393 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;12.186 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.283 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 273 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2296 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 431 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3864 ;19.043 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7O4N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115105. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46295 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: D_1292115104 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM ACETATE, 0.1 M BIS-TRIS REMARK 280 PH 5.5, 17% PEG 10,000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.81750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.63750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.65450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.63750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.81750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.65450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 58 CD CE NZ REMARK 470 LYS A 147 CB CG CD CE NZ REMARK 470 HIS A 149 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 178 CB CG OD1 ND2 REMARK 470 ASN A 179 CB CG OD1 ND2 REMARK 470 LYS A 186 CD CE NZ REMARK 470 LYS A 201 CE NZ REMARK 470 GLN A 209 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 128 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 147 51.48 36.99 REMARK 500 ASN A 179 54.35 -149.85 REMARK 500 LYS A 180 80.79 -66.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 657 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 658 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 659 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 660 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 661 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A 662 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A 663 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH A 664 DISTANCE = 8.01 ANGSTROMS REMARK 525 HOH A 665 DISTANCE = 9.42 ANGSTROMS REMARK 525 HOH A 666 DISTANCE = 9.62 ANGSTROMS REMARK 525 HOH A 667 DISTANCE = 11.01 ANGSTROMS REMARK 525 HOH A 668 DISTANCE = 12.17 ANGSTROMS REMARK 525 HOH A 669 DISTANCE = 14.77 ANGSTROMS REMARK 525 HOH A 670 DISTANCE = 19.44 ANGSTROMS REMARK 525 HOH A 671 DISTANCE = 21.17 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 DBREF1 7O4N A 1 225 UNP A0A0D6HIR7_STAAU DBREF2 7O4N A A0A0D6HIR7 1 225 SEQADV 7O4N GLY A 0 UNP A0A0D6HIR EXPRESSION TAG SEQRES 1 A 226 GLY MET ILE SER LEU ASN ASN ARG LEU THR THR VAL SER SEQRES 2 A 226 ARG PHE LEU LYS GLN GLY THR ILE ALA ASP ILE GLY SER SEQRES 3 A 226 ASP HIS ALA TYR LEU PRO ILE TYR ALA ILE GLN ASN HIS SEQRES 4 A 226 LEU CYS GLU CYS GLY ILE ALA GLY GLU VAL ILE GLN GLY SEQRES 5 A 226 PRO PHE GLN ALA ALA VAL LYS ASN VAL ALA ALA ASN GLN SEQRES 6 A 226 LEU VAL ASP ARG ILE ASP VAL ARG LEU GLY ASP GLY LEU SEQRES 7 A 226 SER VAL ILE GLN PRO GLU ASP VAL ILE ASP ASN ILE THR SEQRES 8 A 226 ILE CYS GLY MET GLY GLY PRO LEU ILE ALA LYS ILE LEU SEQRES 9 A 226 LYS ASP GLY GLN ASP LYS LEU SER GLN HIS PRO ARG LEU SEQRES 10 A 226 ILE LEU GLN SER ASN ILE GLN THR GLU ASN LEU ARG GLN SEQRES 11 A 226 THR LEU GLN GLN LEU ASN TYR GLU ILE ILE ASP GLU ILE SEQRES 12 A 226 ILE MET GLU GLU LYS GLY HIS ILE TYR GLU ILE VAL VAL SEQRES 13 A 226 ALA GLU TYR SER THR GLU LEU ILE GLU LEU SER SER ASP SEQRES 14 A 226 GLU LEU LYS PHE GLY PRO LYS LEU LEU ASN ASN LYS ASN SEQRES 15 A 226 GLU TYR PHE ILE LYS LYS TRP GLN ARG GLU LEU GLU ALA SEQRES 16 A 226 LEU TYR HIS ILE LYS SER LYS LEU ASN THR GLU GLN HIS SEQRES 17 A 226 HIS GLN ARG LEU ALA GLN ILE ASN ASP GLU ILE ALA VAL SEQRES 18 A 226 ILE GLU ARG VAL LEU HET SAM A 301 27 HET GOL A 302 6 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *271(H2 O) HELIX 1 AA1 ASN A 5 ARG A 13 1 9 HELIX 2 AA2 ALA A 28 ASN A 37 1 10 HELIX 3 AA3 ILE A 49 ASN A 63 1 15 HELIX 4 AA4 ASP A 75 ILE A 80 5 6 HELIX 5 AA5 GLY A 95 GLY A 106 1 12 HELIX 6 AA6 GLN A 107 SER A 111 5 5 HELIX 7 AA7 GLN A 123 LEU A 134 1 12 HELIX 8 AA8 SER A 166 GLY A 173 1 8 HELIX 9 AA9 LYS A 175 ASN A 179 5 5 HELIX 10 AB1 ASN A 181 SER A 200 1 20 HELIX 11 AB2 HIS A 207 LEU A 225 1 19 SHEET 1 AA1 7 ILE A 69 LEU A 73 0 SHEET 2 AA1 7 CYS A 42 GLU A 47 1 N ALA A 45 O ARG A 72 SHEET 3 AA1 7 THR A 19 ILE A 23 1 N ASP A 22 O ILE A 44 SHEET 4 AA1 7 ASN A 88 MET A 94 1 O THR A 90 N ILE A 23 SHEET 5 AA1 7 ARG A 115 SER A 120 1 O GLN A 119 N ILE A 91 SHEET 6 AA1 7 HIS A 149 TYR A 158 -1 O VAL A 154 N LEU A 118 SHEET 7 AA1 7 TYR A 136 GLU A 146 -1 N ASP A 140 O VAL A 155 SITE 1 AC1 15 ARG A 7 LEU A 8 GLY A 24 ASP A 26 SITE 2 AC1 15 VAL A 48 ASP A 75 GLY A 76 CYS A 92 SITE 3 AC1 15 GLY A 93 HOH A 478 HOH A 480 HOH A 519 SITE 4 AC1 15 HOH A 522 HOH A 554 HOH A 646 SITE 1 AC2 8 LYS A 104 GLN A 107 GLN A 133 LYS A 199 SITE 2 AC2 8 ASN A 215 ILE A 218 HOH A 455 HOH A 544 CRYST1 59.635 61.309 63.275 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016769 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015804 0.00000