HEADER TOXIN 07-APR-21 7O4W TITLE CRYSTAL STRUCTURE OF DIPHTHERIA TOXIN MUTANT CRM197 WITH A DISULPHIDE TITLE 2 BOND REPLACED BY A CYS-ACETONE-CYS BRIDGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPHTHERIA TOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE; SOURCE 3 ORGANISM_TAXID: 1717; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIPHTHERIA TOXIN, MUTANT, DISULPHIDE BRIDGE, MODIFIED DISULPHIDE KEYWDS 2 BRIDGE, ACETONE., TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR D.VEGGI,L.DELLO IACONO REVDAT 2 31-JAN-24 7O4W 1 REMARK REVDAT 1 06-APR-22 7O4W 0 JRNL AUTH F.CARBONI,A.KITOWSKI,C.SORIEUL,D.VEGGI,M.C.MARQUES, JRNL AUTH 2 D.OLDRINI,E.BALDUCCI,B.BROGIONI,L.DEL BINO,A.CORRADO, JRNL AUTH 3 F.ANGIOLINI,L.DELLO IACONO,I.MARGARIT,M.R.ROMANO, JRNL AUTH 4 G.J.L.BERNARDES,R.ADAMO JRNL TITL RETAINING THE STRUCTURAL INTEGRITY OF DISULFIDE BONDS IN JRNL TITL 2 DIPHTHERIA TOXOID CARRIER PROTEIN IS CRUCIAL FOR THE JRNL TITL 3 EFFECTIVENESS OF GLYCOCONJUGATE VACCINE CANDIDATES. JRNL REF CHEM SCI V. 13 2440 2022 JRNL REFN ISSN 2041-6520 JRNL PMID 35310500 JRNL DOI 10.1039/D1SC01928G REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.355 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.898 REMARK 3 FREE R VALUE TEST SET COUNT : 1716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9980 - 4.6464 1.00 2852 158 0.1754 0.2080 REMARK 3 2 4.6464 - 3.6884 1.00 2819 142 0.1595 0.1754 REMARK 3 3 3.6884 - 3.2222 1.00 2771 140 0.2047 0.2271 REMARK 3 4 3.2222 - 2.9277 1.00 2754 172 0.2342 0.2740 REMARK 3 5 2.9277 - 2.7178 1.00 2775 127 0.2511 0.3076 REMARK 3 6 2.7178 - 2.5576 1.00 2781 146 0.2439 0.3012 REMARK 3 7 2.5576 - 2.4295 1.00 2750 151 0.2469 0.2998 REMARK 3 8 2.4295 - 2.3238 1.00 2755 141 0.2496 0.2858 REMARK 3 9 2.3238 - 2.2343 1.00 2717 152 0.2535 0.3133 REMARK 3 10 2.2343 - 2.1572 1.00 2807 112 0.2686 0.3242 REMARK 3 11 2.1572 - 2.0898 1.00 2756 139 0.2913 0.3383 REMARK 3 12 2.0898 - 2.0300 1.00 2784 136 0.3132 0.3488 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.311 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.392 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 4054 REMARK 3 ANGLE : 1.211 5481 REMARK 3 CHIRALITY : 0.075 623 REMARK 3 PLANARITY : 0.008 707 REMARK 3 DIHEDRAL : 19.584 1460 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O4W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35072 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.22500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4AE0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE, 0.2 M REMARK 280 MAGNESIUM ACETATE, 20% W/V PEG 8000, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.75567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.51133 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 65.51133 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.75567 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -48.99800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 84.86703 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 196.53400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 827 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 42 REMARK 465 GLN A 43 REMARK 465 GLY A 44 REMARK 465 ALA A 187 REMARK 465 GLY A 188 REMARK 465 ASN A 189 REMARK 465 ARG A 190 REMARK 465 VAL A 191 REMARK 465 ARG A 192 REMARK 465 ARG A 193 REMARK 465 SER A 194 REMARK 465 VAL A 195 REMARK 465 GLY A 196 REMARK 465 SER A 197 REMARK 465 SER A 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 GLN A 36 CG CD OE1 NE2 REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 TYR A 54 CE1 CE2 CZ OH REMARK 470 GLU A 70 CD OE1 OE2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 ARG A 126 NE CZ NH1 NH2 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 ASN A 203 CG OD1 ND2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 LYS A 229 CE NZ REMARK 470 GLU A 232 CD OE1 OE2 REMARK 470 GLU A 292 CD OE1 OE2 REMARK 470 LYS A 385 NZ REMARK 470 LYS A 498 CD CE NZ REMARK 470 HIS A 520 CG ND1 CD2 CE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 45 C REMARK 480 LEU A 138 CG REMARK 480 GLU A 248 CD REMARK 480 ARG A 472 CZ REMARK 480 GLU A 497 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 711 O HOH A 786 0.53 REMARK 500 O TRP A 50 OE1 GLU A 52 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 112 NZ LYS A 227 3554 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 503 CD GLU A 503 OE1 -0.084 REMARK 500 GLU A 503 CD GLU A 503 OE2 -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 50 50.14 -111.15 REMARK 500 ASP A 68 112.84 -26.29 REMARK 500 SER A 200 -156.62 -51.78 REMARK 500 TYR A 358 -103.10 -105.19 REMARK 500 LYS A 385 -125.49 50.78 REMARK 500 HIS A 391 132.28 -170.51 REMARK 500 ASN A 424 -95.23 -147.66 REMARK 500 LEU A 441 87.75 -170.19 REMARK 500 ASP A 465 -133.68 55.22 REMARK 500 SER A 501 13.45 -68.35 REMARK 500 REMARK 500 REMARK: NULL DBREF 7O4W A 1 535 UNP Q5PY51 Q5PY51_CORDP 2 536 SEQADV 7O4W GLU A 52 UNP Q5PY51 GLY 53 ENGINEERED MUTATION SEQRES 1 A 535 GLY ALA ASP ASP VAL VAL ASP SER SER LYS SER PHE VAL SEQRES 2 A 535 MET GLU ASN PHE SER SER TYR HIS GLY THR LYS PRO GLY SEQRES 3 A 535 TYR VAL ASP SER ILE GLN LYS GLY ILE GLN LYS PRO LYS SEQRES 4 A 535 SER GLY THR GLN GLY ASN TYR ASP ASP ASP TRP LYS GLU SEQRES 5 A 535 PHE TYR SER THR ASP ASN LYS TYR ASP ALA ALA GLY TYR SEQRES 6 A 535 SER VAL ASP ASN GLU ASN PRO LEU SER GLY LYS ALA GLY SEQRES 7 A 535 GLY VAL VAL LYS VAL THR TYR PRO GLY LEU THR LYS VAL SEQRES 8 A 535 LEU ALA LEU LYS VAL ASP ASN ALA GLU THR ILE LYS LYS SEQRES 9 A 535 GLU LEU GLY LEU SER LEU THR GLU PRO LEU MET GLU GLN SEQRES 10 A 535 VAL GLY THR GLU GLU PHE ILE LYS ARG PHE GLY ASP GLY SEQRES 11 A 535 ALA SER ARG VAL VAL LEU SER LEU PRO PHE ALA GLU GLY SEQRES 12 A 535 SER SER SER VAL GLU TYR ILE ASN ASN TRP GLU GLN ALA SEQRES 13 A 535 LYS ALA LEU SER VAL GLU LEU GLU ILE ASN PHE GLU THR SEQRES 14 A 535 ARG GLY LYS ARG GLY GLN ASP ALA MET TYR GLU TYR MET SEQRES 15 A 535 ALA GLN ALA CYS ALA GLY ASN ARG VAL ARG ARG SER VAL SEQRES 16 A 535 GLY SER SER LEU SER CYS ILE ASN LEU ASP TRP ASP VAL SEQRES 17 A 535 ILE ARG ASP LYS THR LYS THR LYS ILE GLU SER LEU LYS SEQRES 18 A 535 GLU HIS GLY PRO ILE LYS ASN LYS MET SER GLU SER PRO SEQRES 19 A 535 ASN LYS THR VAL SER GLU GLU LYS ALA LYS GLN TYR LEU SEQRES 20 A 535 GLU GLU PHE HIS GLN THR ALA LEU GLU HIS PRO GLU LEU SEQRES 21 A 535 SER GLU LEU LYS THR VAL THR GLY THR ASN PRO VAL PHE SEQRES 22 A 535 ALA GLY ALA ASN TYR ALA ALA TRP ALA VAL ASN VAL ALA SEQRES 23 A 535 GLN VAL ILE ASP SER GLU THR ALA ASP ASN LEU GLU LYS SEQRES 24 A 535 THR THR ALA ALA LEU SER ILE LEU PRO GLY ILE GLY SER SEQRES 25 A 535 VAL MET GLY ILE ALA ASP GLY ALA VAL HIS HIS ASN THR SEQRES 26 A 535 GLU GLU ILE VAL ALA GLN SER ILE ALA LEU SER SER LEU SEQRES 27 A 535 MET VAL ALA GLN ALA ILE PRO LEU VAL GLY GLU LEU VAL SEQRES 28 A 535 ASP ILE GLY PHE ALA ALA TYR ASN PHE VAL GLU SER ILE SEQRES 29 A 535 ILE ASN LEU PHE GLN VAL VAL HIS ASN SER TYR ASN ARG SEQRES 30 A 535 PRO ALA TYR SER PRO GLY HIS LYS THR GLN PRO PHE LEU SEQRES 31 A 535 HIS ASP GLY TYR ALA VAL SER TRP ASN THR VAL GLU ASP SEQRES 32 A 535 SER ILE ILE ARG THR GLY PHE GLN GLY GLU SER GLY HIS SEQRES 33 A 535 ASP ILE LYS ILE THR ALA GLU ASN THR PRO LEU PRO ILE SEQRES 34 A 535 ALA GLY VAL LEU LEU PRO THR ILE PRO GLY LYS LEU ASP SEQRES 35 A 535 VAL ASN LYS SER LYS THR HIS ILE SER VAL ASN GLY ARG SEQRES 36 A 535 LYS ILE ARG MET ARG CYS ARG ALA ILE ASP GLY ASP VAL SEQRES 37 A 535 THR PHE CYS ARG PRO LYS SER PRO VAL TYR VAL GLY ASN SEQRES 38 A 535 GLY VAL HIS ALA ASN LEU HIS VAL ALA PHE HIS ARG SER SEQRES 39 A 535 SER SER GLU LYS ILE HIS SER ASN GLU ILE SER SER ASP SEQRES 40 A 535 SER ILE GLY VAL LEU GLY TYR GLN LYS THR VAL ASP HIS SEQRES 41 A 535 THR LYS VAL ASN SER LYS LEU SER LEU PHE PHE GLU ILE SEQRES 42 A 535 LYS SER HET 4Y8 A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET PGE A 605 10 HET PGE A 606 10 HET ACT A 607 4 HETNAM 4Y8 1-HYDROXYPROPAN-2-ONE HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 4Y8 C3 H6 O2 FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 PGE 2(C6 H14 O4) FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 HOH *133(H2 O) HELIX 1 AA1 GLY A 1 VAL A 6 1 6 HELIX 2 AA2 TYR A 27 GLN A 32 1 6 HELIX 3 AA3 ASP A 47 LYS A 51 5 5 HELIX 4 AA4 ASN A 58 ALA A 63 1 6 HELIX 5 AA5 GLY A 64 SER A 66 5 3 HELIX 6 AA6 ASN A 98 LEU A 106 1 9 HELIX 7 AA7 PRO A 113 GLY A 119 1 7 HELIX 8 AA8 THR A 120 GLY A 128 1 9 HELIX 9 AA9 ASN A 152 LYS A 157 1 6 HELIX 10 AB1 GLN A 175 ALA A 183 1 9 HELIX 11 AB2 ASP A 205 LYS A 221 1 17 HELIX 12 AB3 HIS A 223 SER A 233 1 11 HELIX 13 AB4 SER A 239 LEU A 255 1 17 HELIX 14 AB5 GLU A 256 GLU A 259 5 4 HELIX 15 AB6 LEU A 260 THR A 269 1 10 HELIX 16 AB7 ASN A 270 PHE A 273 5 4 HELIX 17 AB8 ALA A 274 ILE A 289 1 16 HELIX 18 AB9 ASP A 290 ASP A 295 1 6 HELIX 19 AC1 ASN A 296 SER A 305 1 10 HELIX 20 AC2 GLY A 309 GLY A 315 1 7 HELIX 21 AC3 THR A 325 GLY A 348 1 24 HELIX 22 AC4 ILE A 353 TYR A 358 1 6 HELIX 23 AC5 TYR A 358 ASN A 376 1 19 HELIX 24 AC6 VAL A 401 ASP A 403 5 3 SHEET 1 AA1 5 PHE A 12 GLU A 15 0 SHEET 2 AA1 5 LEU A 88 ALA A 93 -1 O THR A 89 N MET A 14 SHEET 3 AA1 5 ARG A 133 PRO A 139 1 O ARG A 133 N LYS A 90 SHEET 4 AA1 5 VAL A 147 ASN A 151 -1 O GLU A 148 N LEU A 138 SHEET 5 AA1 5 PHE A 53 THR A 56 -1 N SER A 55 O TYR A 149 SHEET 1 AA2 3 SER A 18 THR A 23 0 SHEET 2 AA2 3 GLY A 79 THR A 84 -1 O VAL A 83 N SER A 19 SHEET 3 AA2 3 SER A 160 ASN A 166 -1 O SER A 160 N THR A 84 SHEET 1 AA3 2 ILE A 316 ALA A 317 0 SHEET 2 AA3 2 ALA A 320 VAL A 321 -1 O ALA A 320 N ALA A 317 SHEET 1 AA4 5 PHE A 389 HIS A 391 0 SHEET 2 AA4 5 TYR A 394 TRP A 398 -1 O VAL A 396 N PHE A 389 SHEET 3 AA4 5 GLY A 412 ALA A 422 -1 O LYS A 419 N SER A 397 SHEET 4 AA4 5 ALA A 485 ARG A 493 -1 O VAL A 489 N HIS A 416 SHEET 5 AA4 5 ASP A 442 VAL A 443 -1 N ASP A 442 O HIS A 492 SHEET 1 AA510 PHE A 389 HIS A 391 0 SHEET 2 AA510 TYR A 394 TRP A 398 -1 O VAL A 396 N PHE A 389 SHEET 3 AA510 GLY A 412 ALA A 422 -1 O LYS A 419 N SER A 397 SHEET 4 AA510 ALA A 485 ARG A 493 -1 O VAL A 489 N HIS A 416 SHEET 5 AA510 HIS A 449 VAL A 452 -1 N HIS A 449 O HIS A 488 SHEET 6 AA510 ARG A 455 ILE A 464 -1 O ILE A 457 N ILE A 450 SHEET 7 AA510 VAL A 468 PRO A 473 -1 O VAL A 468 N ILE A 464 SHEET 8 AA510 GLY A 431 PRO A 435 -1 N VAL A 432 O CYS A 471 SHEET 9 AA510 SER A 508 THR A 517 -1 O LEU A 512 N GLY A 431 SHEET 10 AA510 LYS A 522 PHE A 530 -1 O SER A 525 N GLY A 513 SHEET 1 AA6 2 ILE A 405 ARG A 407 0 SHEET 2 AA6 2 GLU A 532 LYS A 534 1 O GLU A 532 N ILE A 406 SHEET 1 AA7 2 LEU A 427 ILE A 429 0 SHEET 2 AA7 2 VAL A 477 VAL A 479 -1 O VAL A 479 N LEU A 427 SSBOND 1 CYS A 461 CYS A 471 1555 1555 2.07 LINK SG CYS A 186 CM2 4Y8 A 601 1555 1555 1.85 LINK SG CYS A 201 CM1 4Y8 A 601 1555 1555 1.84 CRYST1 97.996 97.996 98.267 90.00 90.00 120.00 P 31 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010204 0.005892 0.000000 0.00000 SCALE2 0.000000 0.011783 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010176 0.00000