HEADER LYASE 08-APR-21 7O5I TITLE CRYSTAL STRUCTURE OF APO-SWHKA (HYDROXY KETONE ALDOLASE) FROM TITLE 2 SPHINGOMONAS WITTICHII RW1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HPCH/HPAI ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS WITTICHII (STRAIN RW1 / DSM 6014 / SOURCE 3 JCM 10273); SOURCE 4 ORGANISM_TAXID: 392499; SOURCE 5 STRAIN: RW1 / DSM 6014 / JCM 10273; SOURCE 6 GENE: SWIT_5035; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CLASS II PYRUVATE ALDOLASE, METAL DEPENDENT ALDOLASE, ALDOL REACTION, KEYWDS 2 CARBON BOND FORMATION, APO, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LAUSTSEN,I.JUSTO,S.R.MARSDEN,U.HANEFELD,I.BENTO REVDAT 4 19-JUN-24 7O5I 1 REMARK REVDAT 3 07-DEC-22 7O5I 1 JRNL REVDAT 2 23-NOV-22 7O5I 1 JRNL REVDAT 1 16-NOV-22 7O5I 0 JRNL AUTH S.R.MARSDEN,H.J.WIJMA,M.K.F.MOHR,I.JUSTO,P.L.HAGEDOORN, JRNL AUTH 2 J.LAUSTSEN,C.M.JEFFRIES,D.SVERGUN,L.MESTROM,D.G.G.MCMILLAN, JRNL AUTH 3 I.BENTO,U.HANEFELD JRNL TITL SUBSTRATE INDUCED MOVEMENT OF THE METAL COFACTOR BETWEEN JRNL TITL 2 ACTIVE AND RESTING STATE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 61 13338 2022 JRNL REFN ESSN 1521-3773 JRNL PMID 36214476 JRNL DOI 10.1002/ANIE.202213338 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 59220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2870 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2773 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2519 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.2767 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 331 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O5I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292114048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : OXFORD-FNB REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59487 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 116.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 7.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 116.3 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.06300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 33.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, SODIUM CITRATE, PH 7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 14555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 16555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 17555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 18555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 19555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 20555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 21555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 22555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 23555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 24555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 58.18800 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 58.18800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 58.18800 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 58.18800 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 58.18800 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 58.18800 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 58.18800 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 58.18800 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 58.18800 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 58.18800 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 58.18800 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 58.18800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 58.18800 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 58.18800 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 58.18800 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 58.18800 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 58.18800 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 58.18800 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 58.18800 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 58.18800 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 58.18800 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 58.18800 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 58.18800 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 58.18800 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 58.18800 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 58.18800 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 58.18800 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 58.18800 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 58.18800 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 58.18800 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 58.18800 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 58.18800 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 58.18800 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 58.18800 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 58.18800 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 58.18800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -140.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 116.37600 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 116.37600 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 116.37600 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 116.37600 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 58.18800 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 -58.18800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 58.18800 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 174.56400 REMARK 350 BIOMT2 5 0.000000 0.000000 -1.000000 58.18800 REMARK 350 BIOMT3 5 0.000000 -1.000000 0.000000 58.18800 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 58.18800 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 58.18800 REMARK 350 BIOMT3 6 1.000000 0.000000 0.000000 -58.18800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 650 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 675 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 676 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 679 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 687 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 688 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 691 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 703 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 706 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 719 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 725 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 529 O HOH A 651 1.89 REMARK 500 O HOH A 466 O HOH A 476 1.98 REMARK 500 O HOH A 605 O HOH A 660 2.04 REMARK 500 O HOH A 527 O HOH A 619 2.08 REMARK 500 O HOH A 476 O HOH A 555 2.10 REMARK 500 O HOH A 610 O HOH A 638 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 624 O HOH A 630 13545 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 43 -60.68 -99.84 REMARK 500 HIS A 44 61.14 -105.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 728 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 729 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 730 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 731 DISTANCE = 6.35 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 302 REMARK 610 PEG A 303 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 306 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 31 O REMARK 620 2 LEU A 33 O 78.4 REMARK 620 3 TYR A 35 O 105.3 87.1 REMARK 620 4 GLY A 63 O 88.3 166.6 98.5 REMARK 620 5 HOH A 548 O 78.1 102.9 170.0 72.0 REMARK 620 6 HOH A 612 O 175.8 104.7 77.9 88.4 98.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6R62 RELATED DB: PDB REMARK 900 RELATED ID: 7NUJ RELATED DB: PDB REMARK 900 RELATED ID: 7NR1 RELATED DB: PDB REMARK 900 RELATED ID: 7NNK RELATED DB: PDB DBREF 7O5I A 2 251 UNP A5VH82 A5VH82_SPHWW 2 251 SEQADV 7O5I HIS A -1 UNP A5VH82 EXPRESSION TAG SEQADV 7O5I HIS A 0 UNP A5VH82 EXPRESSION TAG SEQADV 7O5I HIS A 1 UNP A5VH82 EXPRESSION TAG SEQRES 1 A 253 HIS HIS HIS ASN LYS VAL ARG THR CYS TRP ASN GLU GLY SEQRES 2 A 253 ARG PRO ALA LEU ALA GLY TRP LEU GLN LEU PRO GLY THR SEQRES 3 A 253 LEU HIS ALA GLU ALA LEU ALA ARG LEU ASP TYR ASP ALA SEQRES 4 A 253 VAL VAL ILE ASP MET GLN HIS SER PRO ILE ASP PHE GLY SEQRES 5 A 253 GLN VAL ALA PRO MET LEU ILE ALA ILE GLU LEU GLY GLY SEQRES 6 A 253 ALA GLU PRO PHE VAL ARG THR GLN VAL ASN ASP PRO SER SEQRES 7 A 253 ASP ILE MET LYS LEU LEU ASP ALA GLY ALA TYR GLY ILE SEQRES 8 A 253 ILE ALA PRO MET VAL ASN THR ARG ALA GLU ALA GLN THR SEQRES 9 A 253 LEU ALA SER ALA LEU HIS TYR SER PRO ARG GLY LEU ARG SEQRES 10 A 253 SER PHE GLY PRO ARG ARG PRO SER LEU ARG TYR GLY SER SEQRES 11 A 253 GLY TYR LEU ALA GLN ALA SER GLU THR VAL VAL GLY LEU SEQRES 12 A 253 ALA MET ILE GLU THR ARG GLU ALA LEU ALA ASN ILE ASP SEQRES 13 A 253 GLU ILE LEU SER VAL ASP GLY ILE ASP GLY VAL PHE ILE SEQRES 14 A 253 GLY PRO THR ASP LEU ALA LEU ASP LEU GLY HIS ALA PRO SEQRES 15 A 253 LEU VAL ASP THR GLU GLU ALA GLU VAL VAL SER ALA ILE SEQRES 16 A 253 ALA HIS VAL ARG GLU ARG ALA HIS ALA ALA GLY LYS ARG SEQRES 17 A 253 VAL GLY ILE PHE CYS GLY SER GLY GLY PHE ALA ARG VAL SEQRES 18 A 253 LYS LEU ALA GLU GLY PHE ASP PHE VAL THR ALA ALA PRO SEQRES 19 A 253 ASP LEU ALA MET LEU SER ALA ALA ALA ARG GLN VAL ILE SEQRES 20 A 253 ALA ASP ALA ARG ALA LEU HET PEG A 301 34 HET PEG A 302 9 HET PEG A 303 9 HET BR A 304 1 HET BR A 305 1 HET K A 306 1 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM BR BROMIDE ION HETNAM K POTASSIUM ION FORMUL 2 PEG 3(C4 H10 O3) FORMUL 5 BR 2(BR 1-) FORMUL 7 K K 1+ FORMUL 8 HOH *331(H2 O) HELIX 1 AA1 ASN A 2 GLU A 10 1 9 HELIX 2 AA2 THR A 24 ARG A 32 1 9 HELIX 3 AA3 ASP A 48 GLY A 63 1 16 HELIX 4 AA4 ASP A 74 ALA A 84 1 11 HELIX 5 AA5 THR A 96 LEU A 107 1 12 HELIX 6 AA6 PRO A 119 GLY A 127 1 9 HELIX 7 AA7 GLY A 129 ALA A 134 1 6 HELIX 8 AA8 SER A 135 VAL A 138 5 4 HELIX 9 AA9 THR A 146 ASN A 152 1 7 HELIX 10 AB1 ASN A 152 SER A 158 1 7 HELIX 11 AB2 GLY A 168 LEU A 176 1 9 HELIX 12 AB3 GLU A 186 ALA A 203 1 18 HELIX 13 AB4 SER A 213 GLY A 224 1 12 HELIX 14 AB5 ASP A 233 ALA A 250 1 18 SHEET 1 AA1 9 ALA A 14 LEU A 19 0 SHEET 2 AA1 9 ALA A 37 ASP A 41 1 O ASP A 41 N LEU A 19 SHEET 3 AA1 9 GLU A 65 ARG A 69 1 O PHE A 67 N ILE A 40 SHEET 4 AA1 9 GLY A 88 ALA A 91 1 O ILE A 90 N VAL A 68 SHEET 5 AA1 9 VAL A 139 ILE A 144 1 O LEU A 141 N ILE A 89 SHEET 6 AA1 9 GLY A 164 ILE A 167 1 O PHE A 166 N ALA A 142 SHEET 7 AA1 9 ARG A 206 PHE A 210 1 O GLY A 208 N ILE A 167 SHEET 8 AA1 9 PHE A 227 PRO A 232 1 O THR A 229 N ILE A 209 SHEET 9 AA1 9 ALA A 14 LEU A 19 1 N ALA A 16 O VAL A 228 LINK O ALA A 31 K K A 306 1555 1555 2.64 LINK O LEU A 33 K K A 306 1555 1555 2.68 LINK O TYR A 35 K K A 306 1555 1555 2.80 LINK O GLY A 63 K K A 306 1555 1555 2.86 LINK K K A 306 O HOH A 548 1555 1555 2.87 LINK K K A 306 O HOH A 612 1555 1555 2.71 CISPEP 1 SER A 110 PRO A 111 0 7.98 CISPEP 2 ALA A 230 ALA A 231 0 -16.00 CRYST1 116.376 116.376 116.376 90.00 90.00 90.00 P 42 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008593 0.00000