HEADER HYDROLASE 08-APR-21 7O5M TITLE CRYSTAL STRUCTURE OF S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE FROM TITLE 2 SYNECHOCYSTIS SP. PCC 6803 COCRYSTALLIZED WITH ADENOSINE IN THE TITLE 3 PRESENCE OF NA+ CATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSYLHOMOCYSTEINASE; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE,ADOHCYASE; COMPND 5 EC: 3.3.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. (STRAIN PCC 6803 / KAZUSA); SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 STRAIN: PCC 6803 / KAZUSA; SOURCE 5 GENE: AHCY, SLL1234; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS(DE3)-RIPL KEYWDS HYDROLASE, REGULATION OF SAM-DEPENDENT METHYLATION REACTIONS EXPDTA X-RAY DIFFRACTION AUTHOR P.H.MALECKI,B.IMIOLCZYK,J.BARCISZEWSKI,J.CZYRKO-HORCZAK,K.BRZEZINSKI REVDAT 3 31-JAN-24 7O5M 1 REMARK REVDAT 2 13-JUL-22 7O5M 1 JRNL REVDAT 1 20-APR-22 7O5M 0 JRNL AUTH P.H.MALECKI,B.IMIOLCZYK,J.BARCISZEWSKI,J.CZYRKO-HORCZAK, JRNL AUTH 2 J.SLIWIAK,M.GAWEL,K.WOZNIAK,M.JASKOLSKI,K.BRZEZINSKI JRNL TITL BIOCHEMICAL AND STRUCTURAL INSIGHTS INTO AN UNUSUAL, JRNL TITL 2 ALKALI-METAL-INDEPENDENT S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE JRNL TITL 3 FROM SYNECHOCYSTIS SP. PCC 6803. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 78 865 2022 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 35775986 JRNL DOI 10.1107/S2059798322005605 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 46897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2700 - 4.2000 0.94 6860 154 0.1763 0.2206 REMARK 3 2 4.2000 - 3.3400 0.96 6783 153 0.1585 0.1966 REMARK 3 3 3.3400 - 2.9200 0.97 6789 152 0.1951 0.3067 REMARK 3 4 2.9200 - 2.6500 0.97 6798 153 0.2104 0.2359 REMARK 3 5 2.6500 - 2.4600 0.98 6803 153 0.2154 0.2985 REMARK 3 6 2.4600 - 2.3100 0.93 6476 146 0.2358 0.2912 REMARK 3 7 2.3100 - 2.2000 0.77 5356 121 0.2487 0.3068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0414 71.9826 42.4912 REMARK 3 T TENSOR REMARK 3 T11: 0.1059 T22: 0.2028 REMARK 3 T33: 0.1878 T12: -0.0138 REMARK 3 T13: -0.0397 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.5371 L22: 1.6630 REMARK 3 L33: 1.9964 L12: -0.3427 REMARK 3 L13: -0.5778 L23: -0.2097 REMARK 3 S TENSOR REMARK 3 S11: -0.0793 S12: -0.0676 S13: 0.1503 REMARK 3 S21: 0.0732 S22: 0.0526 S23: -0.1371 REMARK 3 S31: -0.0079 S32: 0.2452 S33: 0.0233 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5413 82.9318 49.7967 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.1792 REMARK 3 T33: 0.1684 T12: 0.0445 REMARK 3 T13: -0.0188 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 5.8157 L22: 6.5942 REMARK 3 L33: 2.0237 L12: 1.1309 REMARK 3 L13: -1.1153 L23: -0.5366 REMARK 3 S TENSOR REMARK 3 S11: -0.1103 S12: -0.4848 S13: -0.0836 REMARK 3 S21: 0.2525 S22: 0.0532 S23: 0.2034 REMARK 3 S31: -0.2500 S32: -0.0900 S33: 0.0766 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3774 70.1165 33.5679 REMARK 3 T TENSOR REMARK 3 T11: 0.1341 T22: 0.1505 REMARK 3 T33: 0.1499 T12: 0.0063 REMARK 3 T13: 0.0101 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.6688 L22: 0.5440 REMARK 3 L33: 0.6189 L12: 0.4818 REMARK 3 L13: 0.1334 L23: -0.1749 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: -0.0036 S13: 0.1221 REMARK 3 S21: 0.0176 S22: -0.0705 S23: 0.0395 REMARK 3 S31: -0.0311 S32: -0.0085 S33: 0.0807 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9744 61.2417 46.3473 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.2010 REMARK 3 T33: 0.1155 T12: -0.0138 REMARK 3 T13: 0.0194 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 2.1289 L22: 4.0218 REMARK 3 L33: 2.3427 L12: 0.2485 REMARK 3 L13: -0.2142 L23: -0.8394 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: -0.1871 S13: 0.0657 REMARK 3 S21: 0.3243 S22: -0.0441 S23: 0.0783 REMARK 3 S31: -0.0707 S32: -0.1093 S33: -0.0061 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 324 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4318 57.9911 48.2173 REMARK 3 T TENSOR REMARK 3 T11: 0.2234 T22: 0.1810 REMARK 3 T33: 0.1371 T12: -0.0370 REMARK 3 T13: -0.0087 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 6.2163 L22: 1.2188 REMARK 3 L33: 1.9267 L12: 2.3365 REMARK 3 L13: -3.1435 L23: -1.4937 REMARK 3 S TENSOR REMARK 3 S11: 0.2237 S12: -0.3101 S13: -0.0084 REMARK 3 S21: 0.1515 S22: -0.1483 S23: 0.0868 REMARK 3 S31: -0.0620 S32: 0.1305 S33: -0.0920 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 356 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2406 80.8608 27.2866 REMARK 3 T TENSOR REMARK 3 T11: 0.1277 T22: 0.1702 REMARK 3 T33: 0.1723 T12: -0.0345 REMARK 3 T13: -0.0257 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 1.0760 L22: 6.0658 REMARK 3 L33: 2.3123 L12: -0.7670 REMARK 3 L13: -0.4200 L23: 2.1609 REMARK 3 S TENSOR REMARK 3 S11: 0.0851 S12: 0.1269 S13: 0.1747 REMARK 3 S21: -0.1614 S22: -0.1863 S23: -0.1306 REMARK 3 S31: -0.3028 S32: 0.1061 S33: 0.0720 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 403 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0827 75.9670 2.5183 REMARK 3 T TENSOR REMARK 3 T11: 0.2425 T22: 0.1716 REMARK 3 T33: 0.2818 T12: -0.0135 REMARK 3 T13: 0.0459 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 6.1584 L22: 3.5551 REMARK 3 L33: 0.3462 L12: -4.4068 REMARK 3 L13: 1.3187 L23: -0.7746 REMARK 3 S TENSOR REMARK 3 S11: 0.1986 S12: 0.5841 S13: 0.6535 REMARK 3 S21: -0.1444 S22: -0.3348 S23: -0.4567 REMARK 3 S31: -0.2654 S32: 0.3362 S33: 0.0748 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 9 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3291 27.7197 45.4876 REMARK 3 T TENSOR REMARK 3 T11: 0.3425 T22: 0.3914 REMARK 3 T33: 0.4360 T12: -0.0149 REMARK 3 T13: -0.0165 T23: 0.0890 REMARK 3 L TENSOR REMARK 3 L11: 0.5585 L22: 2.2980 REMARK 3 L33: 2.5520 L12: -0.4841 REMARK 3 L13: 0.3434 L23: 0.9765 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: -0.1561 S13: -0.0902 REMARK 3 S21: 0.3131 S22: 0.0810 S23: -0.3010 REMARK 3 S31: 0.3613 S32: 0.2716 S33: -0.0633 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 194 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5865 39.4446 28.4131 REMARK 3 T TENSOR REMARK 3 T11: 0.1793 T22: 0.1350 REMARK 3 T33: 0.1511 T12: 0.0142 REMARK 3 T13: 0.0154 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.2114 L22: 0.5396 REMARK 3 L33: 0.7188 L12: 0.1013 REMARK 3 L13: 0.2733 L23: 0.1576 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: -0.0649 S13: -0.2394 REMARK 3 S21: 0.0415 S22: -0.0278 S23: -0.0586 REMARK 3 S31: 0.1876 S32: -0.0045 S33: 0.0240 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292113844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.89429 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46913 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 42.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 4.388 REMARK 200 R MERGE (I) : 0.21600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.91 REMARK 200 R MERGE FOR SHELL (I) : 0.79700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ONF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2MSODIUM FLUORIDE, 0.1MBIS-TRIS REMARK 280 PROPANE PH 7.5, 20% W/VPEG 3350, VAPOR DIFFUSION, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.11500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.11500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.38500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 98.56500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.38500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 98.56500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.11500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.38500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 98.56500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.11500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.38500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 98.56500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -163.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.11500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 862 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 903 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 PRO A 5 REMARK 465 VAL A 6 REMARK 465 LYS A 7 REMARK 465 GLN A 8 REMARK 465 SER A 423 REMARK 465 GLY A 424 REMARK 465 THR A 425 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 ALA C 3 REMARK 465 THR C 4 REMARK 465 PRO C 5 REMARK 465 VAL C 6 REMARK 465 LYS C 7 REMARK 465 GLN C 8 REMARK 465 ALA C 422 REMARK 465 SER C 423 REMARK 465 GLY C 424 REMARK 465 THR C 425 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 14 113.54 -163.20 REMARK 500 ALA A 105 120.38 -173.06 REMARK 500 LYS A 187 -77.77 -103.90 REMARK 500 ARG A 193 -68.57 -97.90 REMARK 500 VAL A 276 54.90 -142.92 REMARK 500 LEU A 345 105.21 -39.19 REMARK 500 ALA A 351 -137.59 -129.71 REMARK 500 TYR C 10 167.29 174.52 REMARK 500 ARG C 125 70.66 43.04 REMARK 500 THR C 175 31.75 -92.41 REMARK 500 LYS C 187 -77.43 -84.24 REMARK 500 TYR C 190 -67.36 -123.91 REMARK 500 ARG C 193 -70.45 -85.40 REMARK 500 VAL C 276 53.29 -142.84 REMARK 500 LEU C 345 104.09 -40.44 REMARK 500 ALA C 351 -132.03 -137.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 901 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 902 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 903 DISTANCE = 6.99 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 502 DBREF 7O5M A 1 425 UNP P74008 SAHH_SYNY3 1 425 DBREF 7O5M C 1 425 UNP P74008 SAHH_SYNY3 1 425 SEQRES 1 A 425 MET VAL ALA THR PRO VAL LYS GLN LYS TYR ASP ILE LYS SEQRES 2 A 425 ASP ILE SER LEU ALA PRO GLN GLY ARG GLN ARG ILE GLU SEQRES 3 A 425 TRP ALA ALA ARG GLU MET PRO VAL LEU LYS GLN ILE ARG SEQRES 4 A 425 GLU ARG PHE ALA GLN GLU LYS PRO PHE ALA GLY ILE ARG SEQRES 5 A 425 LEU VAL ALA CYS CYS HIS VAL THR THR GLU THR ALA ASN SEQRES 6 A 425 LEU ALA ILE ALA LEU HIS ALA GLY GLY ALA ASP SER LEU SEQRES 7 A 425 LEU ILE ALA SER ASN PRO LEU SER THR GLN ASP ASP VAL SEQRES 8 A 425 ALA ALA CYS LEU VAL ALA ASP TYR GLY ILE PRO VAL TYR SEQRES 9 A 425 ALA ILE LYS GLY GLU ASP ASN GLU THR TYR HIS ARG HIS SEQRES 10 A 425 VAL GLN ILE ALA LEU ASP HIS ARG PRO ASN ILE ILE ILE SEQRES 11 A 425 ASP ASP GLY SER ASP VAL VAL ALA THR LEU VAL GLN GLU SEQRES 12 A 425 ARG GLN HIS GLN LEU SER ASP ILE ILE GLY THR THR GLU SEQRES 13 A 425 GLU THR THR THR GLY ILE VAL ARG LEU ARG ALA MET PHE SEQRES 14 A 425 ASN ASP GLY VAL LEU THR PHE PRO ALA MET ASN VAL ASN SEQRES 15 A 425 ASP ALA ASP THR LYS HIS PHE TYR ASP ASN ARG TYR GLY SEQRES 16 A 425 THR GLY GLN SER THR LEU ASP GLY ILE ILE ARG ALA THR SEQRES 17 A 425 ASN ILE LEU LEU ALA GLY LYS THR ILE VAL VAL ALA GLY SEQRES 18 A 425 TYR GLY TRP CYS GLY LYS GLY VAL ALA MET ARG ALA LYS SEQRES 19 A 425 GLY MET GLY ALA ASP VAL ILE VAL THR GLU ILE SER PRO SEQRES 20 A 425 VAL PRO ALA ILE GLU ALA ALA MET ASP GLY PHE ARG VAL SEQRES 21 A 425 MET PRO MET ALA GLU ALA ALA HIS GLN GLY ASP ILE PHE SEQRES 22 A 425 ILE THR VAL THR GLY ASN LYS HIS VAL ILE ARG PRO GLU SEQRES 23 A 425 HIS PHE ALA VAL MET LYS ASP GLY ALA ILE VAL CYS ASN SEQRES 24 A 425 SER GLY HIS PHE ASP ILE GLU ILE ASP LEU LYS SER LEU SEQRES 25 A 425 LYS GLU GLN ALA LYS GLU VAL LYS GLU VAL ARG ASN PHE SEQRES 26 A 425 THR GLU GLN TYR ILE LEU PRO ASN GLY LYS SER ILE ILE SEQRES 27 A 425 VAL ILE GLY GLU GLY ARG LEU VAL ASN LEU ALA ALA ALA SEQRES 28 A 425 GLU GLY HIS PRO SER ALA VAL MET ASP MET SER PHE ALA SEQRES 29 A 425 ASN GLN ALA LEU ALA CYS GLU HIS LEU VAL LYS ASN LYS SEQRES 30 A 425 GLY GLN LEU GLU PRO GLY MET HIS SER ILE PRO VAL GLU SEQRES 31 A 425 VAL ASP GLN GLU ILE ALA ARG LEU LYS LEU GLN ALA MET SEQRES 32 A 425 GLY ILE ALA ILE ASP SER LEU THR PRO GLU GLN VAL GLU SEQRES 33 A 425 TYR ILE ASN SER TRP ALA SER GLY THR SEQRES 1 C 425 MET VAL ALA THR PRO VAL LYS GLN LYS TYR ASP ILE LYS SEQRES 2 C 425 ASP ILE SER LEU ALA PRO GLN GLY ARG GLN ARG ILE GLU SEQRES 3 C 425 TRP ALA ALA ARG GLU MET PRO VAL LEU LYS GLN ILE ARG SEQRES 4 C 425 GLU ARG PHE ALA GLN GLU LYS PRO PHE ALA GLY ILE ARG SEQRES 5 C 425 LEU VAL ALA CYS CYS HIS VAL THR THR GLU THR ALA ASN SEQRES 6 C 425 LEU ALA ILE ALA LEU HIS ALA GLY GLY ALA ASP SER LEU SEQRES 7 C 425 LEU ILE ALA SER ASN PRO LEU SER THR GLN ASP ASP VAL SEQRES 8 C 425 ALA ALA CYS LEU VAL ALA ASP TYR GLY ILE PRO VAL TYR SEQRES 9 C 425 ALA ILE LYS GLY GLU ASP ASN GLU THR TYR HIS ARG HIS SEQRES 10 C 425 VAL GLN ILE ALA LEU ASP HIS ARG PRO ASN ILE ILE ILE SEQRES 11 C 425 ASP ASP GLY SER ASP VAL VAL ALA THR LEU VAL GLN GLU SEQRES 12 C 425 ARG GLN HIS GLN LEU SER ASP ILE ILE GLY THR THR GLU SEQRES 13 C 425 GLU THR THR THR GLY ILE VAL ARG LEU ARG ALA MET PHE SEQRES 14 C 425 ASN ASP GLY VAL LEU THR PHE PRO ALA MET ASN VAL ASN SEQRES 15 C 425 ASP ALA ASP THR LYS HIS PHE TYR ASP ASN ARG TYR GLY SEQRES 16 C 425 THR GLY GLN SER THR LEU ASP GLY ILE ILE ARG ALA THR SEQRES 17 C 425 ASN ILE LEU LEU ALA GLY LYS THR ILE VAL VAL ALA GLY SEQRES 18 C 425 TYR GLY TRP CYS GLY LYS GLY VAL ALA MET ARG ALA LYS SEQRES 19 C 425 GLY MET GLY ALA ASP VAL ILE VAL THR GLU ILE SER PRO SEQRES 20 C 425 VAL PRO ALA ILE GLU ALA ALA MET ASP GLY PHE ARG VAL SEQRES 21 C 425 MET PRO MET ALA GLU ALA ALA HIS GLN GLY ASP ILE PHE SEQRES 22 C 425 ILE THR VAL THR GLY ASN LYS HIS VAL ILE ARG PRO GLU SEQRES 23 C 425 HIS PHE ALA VAL MET LYS ASP GLY ALA ILE VAL CYS ASN SEQRES 24 C 425 SER GLY HIS PHE ASP ILE GLU ILE ASP LEU LYS SER LEU SEQRES 25 C 425 LYS GLU GLN ALA LYS GLU VAL LYS GLU VAL ARG ASN PHE SEQRES 26 C 425 THR GLU GLN TYR ILE LEU PRO ASN GLY LYS SER ILE ILE SEQRES 27 C 425 VAL ILE GLY GLU GLY ARG LEU VAL ASN LEU ALA ALA ALA SEQRES 28 C 425 GLU GLY HIS PRO SER ALA VAL MET ASP MET SER PHE ALA SEQRES 29 C 425 ASN GLN ALA LEU ALA CYS GLU HIS LEU VAL LYS ASN LYS SEQRES 30 C 425 GLY GLN LEU GLU PRO GLY MET HIS SER ILE PRO VAL GLU SEQRES 31 C 425 VAL ASP GLN GLU ILE ALA ARG LEU LYS LEU GLN ALA MET SEQRES 32 C 425 GLY ILE ALA ILE ASP SER LEU THR PRO GLU GLN VAL GLU SEQRES 33 C 425 TYR ILE ASN SER TRP ALA SER GLY THR HET 1PE A 501 16 HET NAD A 502 44 HET ADN A 503 19 HET CL A 504 2 HET NAD C 501 44 HET CL C 502 1 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM ADN ADENOSINE HETNAM CL CHLORIDE ION HETSYN 1PE PEG400 FORMUL 3 1PE C10 H22 O6 FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 ADN C10 H13 N5 O4 FORMUL 6 CL 2(CL 1-) FORMUL 9 HOH *489(H2 O) HELIX 1 AA1 ASP A 14 SER A 16 5 3 HELIX 2 AA2 LEU A 17 ARG A 30 1 14 HELIX 3 AA3 MET A 32 LYS A 46 1 15 HELIX 4 AA4 THR A 60 GLY A 73 1 14 HELIX 5 AA5 GLN A 88 GLY A 100 1 13 HELIX 6 AA6 ASP A 110 HIS A 124 1 15 HELIX 7 AA7 SER A 134 ARG A 144 1 11 HELIX 8 AA8 GLN A 145 ILE A 151 5 7 HELIX 9 AA9 THR A 158 ASP A 171 1 14 HELIX 10 AB1 ALA A 184 PHE A 189 1 6 HELIX 11 AB2 ARG A 193 ASN A 209 1 17 HELIX 12 AB3 GLY A 223 MET A 236 1 14 HELIX 13 AB4 SER A 246 ASP A 256 1 11 HELIX 14 AB5 PRO A 262 ALA A 267 1 6 HELIX 15 AB6 ARG A 284 ALA A 289 1 6 HELIX 16 AB7 PHE A 303 ILE A 307 5 5 HELIX 17 AB8 ASP A 308 ALA A 316 1 9 HELIX 18 AB9 GLU A 342 ARG A 344 5 3 HELIX 19 AC1 LEU A 345 ALA A 351 1 7 HELIX 20 AC2 PRO A 355 ASN A 376 1 22 HELIX 21 AC3 PRO A 388 MET A 403 1 16 HELIX 22 AC4 THR A 411 ASN A 419 1 9 HELIX 23 AC5 ASP C 14 SER C 16 5 3 HELIX 24 AC6 LEU C 17 ARG C 30 1 14 HELIX 25 AC7 MET C 32 LYS C 46 1 15 HELIX 26 AC8 THR C 60 GLY C 73 1 14 HELIX 27 AC9 GLN C 88 GLY C 100 1 13 HELIX 28 AD1 ASP C 110 ASP C 123 1 14 HELIX 29 AD2 SER C 134 ARG C 144 1 11 HELIX 30 AD3 GLN C 145 ILE C 151 5 7 HELIX 31 AD4 THR C 158 ASP C 171 1 14 HELIX 32 AD5 ALA C 184 PHE C 189 1 6 HELIX 33 AD6 ARG C 193 ASN C 209 1 17 HELIX 34 AD7 GLY C 223 MET C 236 1 14 HELIX 35 AD8 SER C 246 ASP C 256 1 11 HELIX 36 AD9 PRO C 262 ALA C 267 1 6 HELIX 37 AE1 ARG C 284 ALA C 289 1 6 HELIX 38 AE2 PHE C 303 ILE C 307 5 5 HELIX 39 AE3 ASP C 308 ALA C 316 1 9 HELIX 40 AE4 GLU C 342 ARG C 344 5 3 HELIX 41 AE5 LEU C 345 ALA C 351 1 7 HELIX 42 AE6 PRO C 355 ASN C 376 1 22 HELIX 43 AE7 PRO C 388 MET C 403 1 16 HELIX 44 AE8 THR C 411 SER C 420 1 10 SHEET 1 AA1 8 ASP A 11 ILE A 12 0 SHEET 2 AA1 8 VAL A 103 ALA A 105 1 O VAL A 103 N ASP A 11 SHEET 3 AA1 8 ASP A 76 ALA A 81 1 N LEU A 79 O TYR A 104 SHEET 4 AA1 8 ARG A 52 CYS A 57 1 N ALA A 55 O LEU A 78 SHEET 5 AA1 8 ILE A 128 ASP A 131 1 O ILE A 130 N CYS A 56 SHEET 6 AA1 8 GLY A 153 GLU A 156 1 O THR A 155 N ILE A 129 SHEET 7 AA1 8 PRO A 177 ASN A 180 1 O MET A 179 N THR A 154 SHEET 8 AA1 8 GLY A 383 SER A 386 1 O HIS A 385 N ASN A 180 SHEET 1 AA2 8 ARG A 259 VAL A 260 0 SHEET 2 AA2 8 ASP A 239 THR A 243 1 N VAL A 242 O ARG A 259 SHEET 3 AA2 8 THR A 216 ALA A 220 1 N VAL A 219 O ILE A 241 SHEET 4 AA2 8 ILE A 272 THR A 275 1 O ILE A 272 N VAL A 218 SHEET 5 AA2 8 ALA A 295 ASN A 299 1 O ILE A 296 N PHE A 273 SHEET 6 AA2 8 SER A 336 ILE A 340 1 O ILE A 338 N VAL A 297 SHEET 7 AA2 8 THR A 326 ILE A 330 -1 N TYR A 329 O ILE A 337 SHEET 8 AA2 8 GLU A 318 ARG A 323 -1 N LYS A 320 O GLN A 328 SHEET 1 AA3 7 VAL C 103 TYR C 104 0 SHEET 2 AA3 7 ASP C 76 ALA C 81 1 N LEU C 79 O TYR C 104 SHEET 3 AA3 7 ARG C 52 CYS C 57 1 N LEU C 53 O ASP C 76 SHEET 4 AA3 7 ILE C 128 ASP C 131 1 O ILE C 130 N VAL C 54 SHEET 5 AA3 7 GLY C 153 GLU C 156 1 O THR C 155 N ILE C 129 SHEET 6 AA3 7 PRO C 177 ASN C 180 1 O MET C 179 N THR C 154 SHEET 7 AA3 7 GLY C 383 SER C 386 1 O HIS C 385 N ASN C 180 SHEET 1 AA4 8 ARG C 259 VAL C 260 0 SHEET 2 AA4 8 ASP C 239 THR C 243 1 N VAL C 242 O ARG C 259 SHEET 3 AA4 8 THR C 216 ALA C 220 1 N VAL C 219 O ILE C 241 SHEET 4 AA4 8 ILE C 272 THR C 275 1 O ILE C 272 N VAL C 218 SHEET 5 AA4 8 ALA C 295 ASN C 299 1 O ILE C 296 N PHE C 273 SHEET 6 AA4 8 SER C 336 ILE C 340 1 O ILE C 338 N ALA C 295 SHEET 7 AA4 8 THR C 326 ILE C 330 -1 N TYR C 329 O ILE C 337 SHEET 8 AA4 8 GLU C 318 ARG C 323 -1 N LYS C 320 O GLN C 328 SITE 1 AC1 6 ILE A 51 ASN A 127 SER A 149 ASP A 150 SITE 2 AC1 6 ILE A 152 LYS A 377 SITE 1 AC2 30 THR A 158 THR A 159 THR A 160 ASN A 192 SITE 2 AC2 30 THR A 196 GLY A 221 GLY A 223 TRP A 224 SITE 3 AC2 30 CYS A 225 GLU A 244 ILE A 245 PRO A 249 SITE 4 AC2 30 VAL A 276 THR A 277 GLY A 278 ASN A 279 SITE 5 AC2 30 SER A 300 GLY A 301 HIS A 302 LEU A 345 SITE 6 AC2 30 ASN A 347 HIS A 354 ADN A 503 HOH A 613 SITE 7 AC2 30 HOH A 654 HOH A 676 HOH A 703 HOH A 722 SITE 8 AC2 30 HOH A 743 HOH A 769 SITE 1 AC3 15 HIS A 58 THR A 60 GLU A 62 THR A 63 SITE 2 AC3 15 ASP A 132 GLU A 157 THR A 158 LYS A 187 SITE 3 AC3 15 ASP A 191 HIS A 302 HIS A 354 MET A 359 SITE 4 AC3 15 PHE A 363 NAD A 502 HOH A 621 SITE 1 AC4 3 ARG A 41 HOH A 650 HOH A 854 SITE 1 AC5 30 THR C 158 THR C 159 THR C 160 ASN C 192 SITE 2 AC5 30 THR C 196 GLY C 221 GLY C 223 TRP C 224 SITE 3 AC5 30 CYS C 225 GLU C 244 ILE C 245 VAL C 276 SITE 4 AC5 30 THR C 277 GLY C 278 ASN C 279 VAL C 282 SITE 5 AC5 30 SER C 300 GLY C 301 HIS C 302 LEU C 345 SITE 6 AC5 30 ASN C 347 HIS C 354 GLN C 414 HOH C 611 SITE 7 AC5 30 HOH C 623 HOH C 663 HOH C 671 HOH C 678 SITE 8 AC5 30 HOH C 690 HOH C 697 SITE 1 AC6 1 ARG C 41 CRYST1 120.770 197.130 82.230 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008280 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012161 0.00000